TOMM22 encodes hTom22, a single-pass mitochondrial outer membrane receptor and scaffold subunit of the TOM complex. TOMM22 recognizes mitochondrial precursor proteins, helps transfer them toward the TOMM40 pore, and supports TOM complex assembly and stability; its transporter annotation is best interpreted as contribution to TOM complex protein import rather than standalone pore activity.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0030150
protein import into mitochondrial matrix
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Correct as a TOM-complex entry step for matrix-destined mitochondrial preproteins. TOMM22 is a receptor/scaffold that recognizes precursors and transfers them toward the TOMM40 pore before downstream inner-membrane import.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
The **TOM complex** is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria.
file:human/TOMM22/TOMM22-deep-research-falcon.md
TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
|
|
GO:0005742
mitochondrial outer membrane translocase complex
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Correct. TOMM22 is a core receptor/scaffold subunit of the TOM complex / mitochondrial outer membrane translocase complex.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
Human **TOMM22 (Q9NS69)** encodes **hTom22**, a **single-pass outer mitochondrial membrane** subunit of the TOM complex that acts as the **central receptor** and an **assembly-organizing scaffold**.
file:human/TOMM22/TOMM22-deep-research-falcon.md
2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
|
|
GO:0008320
protein transmembrane transporter activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Accepted as contribution to TOM complex protein transmembrane transporter activity. TOMM22 is the receptor/scaffold that transfers precursors toward the TOMM40 pore, not the pore-forming subunit by itself.
Reason: Retain only as complex contribution; TOMM40 is the conducting pore, whereas TOMM22 provides receptor/scaffold function needed for import.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
file:human/TOMM22/TOMM22-deep-research-falcon.md
The 2024 PNAS Nexus study (Su et al.) reports a **human TOM holo complex cryo-EM structure** including intact Tom20 at **~6 Å** and explicitly frames Tom22 as one of the TOM receptors that recognize targeting signals and collaborate in translocation.
|
|
GO:0005741
mitochondrial outer membrane
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Correct. TOMM22 is a single-pass mitochondrial outer membrane component of the TOM complex.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
|
|
GO:0006886
intracellular protein transport
|
IEA
GO_REF:0000002 |
MARK AS OVER ANNOTATED |
Summary: Correct pathway family but too broad. TOMM22 specifically functions in TOM-complex mitochondrial protein import.
Reason: Use mitochondrial protein import/localization and TOM complex terms rather than generic intracellular protein transport.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
The **TOM complex** is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria.
file:human/TOMM22/TOMM22-deep-research-falcon.md
TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
|
|
GO:0005515
protein binding
|
IPI
PMID:12198123 Insertion and assembly of human tom7 into the preprotein tra... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for TOMM22. The informative functions are precursor/targeting-sequence recognition and TOM complex scaffold membership.
Reason: Documented interactions should be captured by TOM complex and targeting-sequence/preprotein receptor annotations rather than generic protein binding.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
Within this machinery, **TOMM22/hTom22** is described as the **central receptor** of the TOM complex, functioning both as:
file:human/TOMM22/TOMM22-deep-research-falcon.md
1) a **major preprotein-binding site** and transfer platform, and
|
|
GO:0005515
protein binding
|
IPI
PMID:25556234 New host factors important for respiratory syncytial virus (... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for TOMM22. The informative functions are precursor/targeting-sequence recognition and TOM complex scaffold membership.
Reason: Documented interactions should be captured by TOM complex and targeting-sequence/preprotein receptor annotations rather than generic protein binding.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
Within this machinery, **TOMM22/hTom22** is described as the **central receptor** of the TOM complex, functioning both as:
file:human/TOMM22/TOMM22-deep-research-falcon.md
1) a **major preprotein-binding site** and transfer platform, and
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for TOMM22. The informative functions are precursor/targeting-sequence recognition and TOM complex scaffold membership.
Reason: Documented interactions should be captured by TOM complex and targeting-sequence/preprotein receptor annotations rather than generic protein binding.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
Within this machinery, **TOMM22/hTom22** is described as the **central receptor** of the TOM complex, functioning both as:
file:human/TOMM22/TOMM22-deep-research-falcon.md
1) a **major preprotein-binding site** and transfer platform, and
|
|
GO:0005515
protein binding
|
IPI
PMID:32814053 Interactome Mapping Provides a Network of Neurodegenerative ... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for TOMM22. The informative functions are precursor/targeting-sequence recognition and TOM complex scaffold membership.
Reason: Documented interactions should be captured by TOM complex and targeting-sequence/preprotein receptor annotations rather than generic protein binding.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
Within this machinery, **TOMM22/hTom22** is described as the **central receptor** of the TOM complex, functioning both as:
file:human/TOMM22/TOMM22-deep-research-falcon.md
1) a **major preprotein-binding site** and transfer platform, and
|
|
GO:0030150
protein import into mitochondrial matrix
|
TAS
PMID:10982837 Identification and functional analysis of human Tom22 for pr... |
ACCEPT |
Summary: Correct as a TOM-complex entry step for matrix-destined mitochondrial preproteins. TOMM22 is a receptor/scaffold that recognizes precursors and transfers them toward the TOMM40 pore before downstream inner-membrane import.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
The **TOM complex** is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria.
file:human/TOMM22/TOMM22-deep-research-falcon.md
TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
|
|
GO:0005739
mitochondrion
|
IDA
GO_REF:0000052 |
MARK AS OVER ANNOTATED |
Summary: Correct but broad. TOMM22 is specifically localized to the mitochondrial outer membrane/TOM complex.
Reason: Prefer mitochondrial outer membrane and TOM complex annotations over generic mitochondrion.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
|
|
GO:0005741
mitochondrial outer membrane
|
EXP
PMID:10982837 Identification and functional analysis of human Tom22 for pr... |
ACCEPT |
Summary: Correct. TOMM22 is a single-pass mitochondrial outer membrane component of the TOM complex.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
|
|
GO:0030150
protein import into mitochondrial matrix
|
IDA
PMID:15644312 Dissection of the mitochondrial import and assembly pathway ... |
ACCEPT |
Summary: Correct as a TOM-complex entry step for matrix-destined mitochondrial preproteins. TOMM22 is a receptor/scaffold that recognizes precursors and transfers them toward the TOMM40 pore before downstream inner-membrane import.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
The **TOM complex** is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria.
file:human/TOMM22/TOMM22-deep-research-falcon.md
TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
|
|
GO:0005741
mitochondrial outer membrane
|
NAS
PMID:18331822 Identification of Tom5 and Tom6 in the preprotein translocas... |
ACCEPT |
Summary: Correct. TOMM22 is a single-pass mitochondrial outer membrane component of the TOM complex.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
|
|
GO:0045040
protein insertion into mitochondrial outer membrane
|
NAS
PMID:18331822 Identification of Tom5 and Tom6 in the preprotein translocas... |
KEEP AS NON CORE |
Summary: Supported as a TOM-complex assembly/import pathway role, but TOMM22 is primarily the TOM receptor/scaffold rather than a general outer-membrane protein insertase.
Reason: Keep as non-core because TOMM22 affects TOM assembly and insertion of TOM-related substrates, while the core function is preprotein receptor/scaffold activity.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
file:human/TOMM22/TOMM22-deep-research-falcon.md
Functional perturbation evidence supports a role for Tom22 as an assembly determinant and, in some contexts, a rate-limiting factor for full TOM complex formation.
|
|
GO:0140596
TOM complex
|
NAS
PMID:18331822 Identification of Tom5 and Tom6 in the preprotein translocas... |
ACCEPT |
Summary: Correct. TOMM22 is a core receptor/scaffold subunit of the TOM complex / mitochondrial outer membrane translocase complex.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
Human **TOMM22 (Q9NS69)** encodes **hTom22**, a **single-pass outer mitochondrial membrane** subunit of the TOM complex that acts as the **central receptor** and an **assembly-organizing scaffold**.
file:human/TOMM22/TOMM22-deep-research-falcon.md
2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
|
|
GO:0005739
mitochondrion
|
HTP
PMID:34800366 Quantitative high-confidence human mitochondrial proteome an... |
MARK AS OVER ANNOTATED |
Summary: Correct but broad. TOMM22 is specifically localized to the mitochondrial outer membrane/TOM complex.
Reason: Prefer mitochondrial outer membrane and TOM complex annotations over generic mitochondrion.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
|
|
GO:0030943
mitochondrion targeting sequence binding
|
IDA
PMID:35733257 Structural basis of Tom20 and Tom22 cytosolic domains as the... |
ACCEPT |
Summary: Correct and core. TOMM22 functions as a major mitochondrial preprotein/targeting-signal binding receptor in the TOM complex.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
1) a **major preprotein-binding site** and transfer platform, and
file:human/TOMM22/TOMM22-deep-research-falcon.md
TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
file:human/TOMM22/TOMM22-deep-research-falcon.md
The 2024 PNAS Nexus study (Su et al.) reports a **human TOM holo complex cryo-EM structure** including intact Tom20 at **~6 Å** and explicitly frames Tom22 as one of the TOM receptors that recognize targeting signals and collaborate in translocation.
|
|
GO:0016020
membrane
|
HDA
PMID:19946888 Defining the membrane proteome of NK cells. |
MARK AS OVER ANNOTATED |
Summary: Correct but very broad. TOMM22 is specifically a mitochondrial outer membrane TOM complex subunit.
Reason: Use mitochondrial outer membrane/TOM complex annotations instead of generic membrane.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
|
|
GO:0005741
mitochondrial outer membrane
|
TAS
Reactome:R-HSA-5205661 |
ACCEPT |
Summary: Correct. TOMM22 is a single-pass mitochondrial outer membrane component of the TOM complex.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
|
|
GO:0016020
membrane
|
IDA
PMID:15644312 Dissection of the mitochondrial import and assembly pathway ... |
MARK AS OVER ANNOTATED |
Summary: Correct but very broad. TOMM22 is specifically a mitochondrial outer membrane TOM complex subunit.
Reason: Use mitochondrial outer membrane/TOM complex annotations instead of generic membrane.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
|
|
GO:0008320
protein transmembrane transporter activity
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Accepted as contribution to TOM complex protein transmembrane transporter activity. TOMM22 is the receptor/scaffold that transfers precursors toward the TOMM40 pore, not the pore-forming subunit by itself.
Reason: Retain only as complex contribution; TOMM40 is the conducting pore, whereas TOMM22 provides receptor/scaffold function needed for import.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
file:human/TOMM22/TOMM22-deep-research-falcon.md
The 2024 PNAS Nexus study (Su et al.) reports a **human TOM holo complex cryo-EM structure** including intact Tom20 at **~6 Å** and explicitly frames Tom22 as one of the TOM receptors that recognize targeting signals and collaborate in translocation.
|
|
GO:0005742
mitochondrial outer membrane translocase complex
|
IDA
PMID:12198123 Insertion and assembly of human tom7 into the preprotein tra... |
ACCEPT |
Summary: Correct. TOMM22 is a core receptor/scaffold subunit of the TOM complex / mitochondrial outer membrane translocase complex.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
Human **TOMM22 (Q9NS69)** encodes **hTom22**, a **single-pass outer mitochondrial membrane** subunit of the TOM complex that acts as the **central receptor** and an **assembly-organizing scaffold**.
file:human/TOMM22/TOMM22-deep-research-falcon.md
2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
|
|
GO:0005742
mitochondrial outer membrane translocase complex
|
IDA
PMID:15644312 Dissection of the mitochondrial import and assembly pathway ... |
ACCEPT |
Summary: Correct. TOMM22 is a core receptor/scaffold subunit of the TOM complex / mitochondrial outer membrane translocase complex.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
Human **TOMM22 (Q9NS69)** encodes **hTom22**, a **single-pass outer mitochondrial membrane** subunit of the TOM complex that acts as the **central receptor** and an **assembly-organizing scaffold**.
file:human/TOMM22/TOMM22-deep-research-falcon.md
2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
|
|
GO:0008320
protein transmembrane transporter activity
|
TAS
PMID:15644312 Dissection of the mitochondrial import and assembly pathway ... |
ACCEPT |
Summary: Accepted as contribution to TOM complex protein transmembrane transporter activity. TOMM22 is the receptor/scaffold that transfers precursors toward the TOMM40 pore, not the pore-forming subunit by itself.
Reason: Retain only as complex contribution; TOMM40 is the conducting pore, whereas TOMM22 provides receptor/scaffold function needed for import.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
file:human/TOMM22/TOMM22-deep-research-falcon.md
The 2024 PNAS Nexus study (Su et al.) reports a **human TOM holo complex cryo-EM structure** including intact Tom20 at **~6 Å** and explicitly frames Tom22 as one of the TOM receptors that recognize targeting signals and collaborate in translocation.
|
|
GO:0005515
protein binding
|
IPI
PMID:14557246 AIP is a mitochondrial import mediator that binds to both im... |
MARK AS OVER ANNOTATED |
Summary: Protein binding is too generic for TOMM22. The informative functions are precursor/targeting-sequence recognition and TOM complex scaffold membership.
Reason: Documented interactions should be captured by TOM complex and targeting-sequence/preprotein receptor annotations rather than generic protein binding.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
Within this machinery, **TOMM22/hTom22** is described as the **central receptor** of the TOM complex, functioning both as:
file:human/TOMM22/TOMM22-deep-research-falcon.md
1) a **major preprotein-binding site** and transfer platform, and
|
|
GO:0070585
protein localization to mitochondrion
|
TAS
PMID:14557246 AIP is a mitochondrial import mediator that binds to both im... |
ACCEPT |
Summary: Correct. TOMM22 is a central TOM-complex receptor/scaffold enabling localization/import of nuclear-encoded mitochondrial precursor proteins.
Supporting Evidence:
file:human/TOMM22/TOMM22-deep-research-falcon.md
The **TOM complex** is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria.
file:human/TOMM22/TOMM22-deep-research-falcon.md
TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
|
Q: Which human mitochondrial precursor classes rely most directly on TOMM22 rather than TOMM20 or TOMM70 receptor engagement?
Q: How separable are TOMM22 precursor-receptor functions from its TOM complex assembly/stability role in human cells?
Experiment: Use TOMM22 cytosolic-domain and transmembrane/interface mutants in rescue cells, then compare precursor binding, TOM complex assembly by BN-PAGE, and import of presequence versus internal-signal substrates.
Hypothesis: TOMM22 targeting-sequence binding and TOM complex scaffold functions are separable.
Experiment: Titrate TOMM22 expression in human cells and measure TOM assembly intermediates, Tom40/Tom7 incorporation, and import flux for representative matrix, inner-membrane, and outer-membrane substrates.
Hypothesis: TOMM22 abundance can become rate-limiting for TOM complex assembly and mitochondrial protein import in high-biogenesis contexts.
The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.
You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.
We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.
We are interested in where in or outside the cell the gene product carries out its function.
We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.
Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.
The UniProt accession Q9NS69 corresponds to human TOMM22 (TOM22), annotated as the mitochondrial import receptor subunit TOM22 homolog (hTom22) and a member of the Tom22 family. Multiple independent human-mitochondria studies and reviews explicitly define Tom22/TOMM22 as a receptor/core subunit of the translocase of the outer mitochondrial membrane (TOM) complex, consistent with the UniProt description and expected domain/family context (Tom22 family single-pass α-helical subunit). (pitt2021abiochemicaland pages 6-9, su2024structureofthe pages 1-3, haastrup2024mitochondrialtranslocasetomm22 pages 1-3)
The TOM complex is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria. In the human system, precursor proteins (carrying N-terminal presequences or internal targeting signals) are recognized by TOM receptors Tom20, Tom22, and Tom70, and then translocated through the Tom40 pore. (su2024structureofthe pages 1-3)
Within this machinery, TOMM22/hTom22 is described as the central receptor of the TOM complex, functioning both as:
1) a major preprotein-binding site and transfer platform, and
2) an organizational scaffold required for correct TOM complex assembly and stability. (pitt2021abiochemicaland pages 6-9)
A quantitative estimate summarized in a structural/biochemical review is that ~1100 proteins out of ~1500 proteins imported by the TOM complex rely on hTom22 for import—emphasizing its broad client range and centrality among TOM receptors. (pitt2021abiochemicaland pages 13-15)
hTom22 is an outer mitochondrial membrane (OMM) component and is structurally a single-pass amphipathic α-helical protein. Cryo-EM-based descriptions place Tom22 between two Tom40 β-barrels, where it forms a key part of the dimeric interface and provides stabilizing support to Tom40. (pitt2021abiochemicaland pages 6-9)
The protein contains a conserved proline that introduces a kink in the transmembrane helix. In available human TOM structures, substantial portions of Tom22 are not resolved (notably residues 1–61 and 119–142 in the cited review’s summary of structural work), implying flexible/disordered regions that may contribute to receptor function and interactions. (pitt2021abiochemicaland pages 6-9)
A major conceptual update in the current understanding is that the human Tom22 IMS-facing region appears mechanistically distinct from fungal Tom22: the review notes that human Tom22 lacks the acidic patch in the IMS region implicated in the fungal “acid chain hypothesis,” and instead contains a glutamine-rich domain. This is interpreted as evidence that some mechanistic features of mitochondrial targeting and translocation characterized in fungi may not directly translate to humans. (pitt2021abiochemicaland pages 6-9)
A 2024 cryo-EM study focused on receptor positioning describes the TOM complex as comprising seven subunits (Tom40, Tom20, Tom22, Tom70, Tom5, Tom6, Tom7) and supports a model in which different receptors can function simultaneously to ensure efficient translocation of precursors. This work obtained a human TOM holo complex containing an intact Tom20 receptor at ~6 Å resolution, in which Tom20 is stabilized by extensive interactions with Tom22, Tom40, and Tom6. (Su et al., 2024; published online 26 Jul 2024; https://doi.org/10.1093/pnasnexus/pgae269) (su2024structureofthe pages 1-3)
The best-supported primary function of TOMM22 is as a central receptor/scaffold enabling mitochondrial protein import via the TOM complex. Functional evidence summarized in the Cells review includes perturbation experiments showing that hTom22 knockdown increases levels of stable hTOM assembly intermediates, consistent with a requirement for Tom22 in Tom40/TOM assembly; conversely, Tom22 overexpression supports the interpretation that Tom22 can be rate-limiting for assembly of complete TOM complexes and can promote integration of other subunits (e.g., Tom7) in a human cell context. (Pitt & Buchanan, 2021; 11 May 2021; https://doi.org/10.3390/cells10051164) (pitt2021abiochemicaland pages 6-9)
Within TOM, Tom22 is positioned to interact closely with Tom40 and other core subunits; receptor-level cooperation includes Tom22 interactions with Tom20 (supported by cross-linking mass spectrometry evidence reported in the review, although not fully resolved structurally). (pitt2021abiochemicaland pages 6-9)
Beyond canonical import, Tom22 is repeatedly described as having a broad interactome that includes proteins involved in apoptosis, mitochondrial dynamics, and metabolic functions. The review highlights functional interactions relevant to:
- Apoptosis via Bax (see below) (pitt2021abiochemicaland pages 13-15)
- Mitochondrial morphology/dynamics (review summary of Tom22 perturbation phenotypes) (pitt2021abiochemicaland pages 15-16)
- Steroidogenesis via a larger metabolic protein complex involving 3βHSD2 and other components (pitt2021abiochemicaland pages 13-15)
These broader interactions are consistent with an emerging view of import machinery components as integration points for stress and signaling, as emphasized by a 2023 review essay describing mitochondrial protein import as a signaling hub connecting mitochondrial and cellular homeostasis. (Lionaki et al., 2023; accepted 2 Jan 2023; https://doi.org/10.1002/bies.202200160) (lionaki2023mitochondrialproteinimport pages 1-2)
The 2024 PNAS Nexus study (Su et al.) reports a human TOM holo complex cryo-EM structure including intact Tom20 at ~6 Å and explicitly frames Tom22 as one of the TOM receptors that recognize targeting signals and collaborate in translocation. This work strengthens a receptor-cooperation model in which Tom22 is physically positioned to stabilize receptor arrangement and facilitate precursor delivery to Tom40. (26 Jul 2024; https://doi.org/10.1093/pnasnexus/pgae269) (su2024structureofthe pages 1-3)
A 2024 Molecular Cancer Research article reports that TOMM22 mRNA/protein is overexpressed in pancreatic ductal adenocarcinoma (PDAC) and is inversely correlated with disease outcomes. Functionally, in pancreatic cancer cell models, TOMM22 silencing decreased whereas forced overexpression increased growth and malignant potential. The authors further report that TOMM22 overexpression increased import of several mitochondrial proteins (including respiration-associated proteins) and was associated with increased complex I (RCI) activity, NAD+/NADH ratio, oxygen consumption rate, mitochondrial membrane potential, and ATP production; complex I inhibition reduced ATP and suppressed malignant phenotypes, linking TOMM22-driven import changes to bioenergetics and growth. (Haastrup et al., 1 Feb 2024 issue date; final article context indicates Feb 2024, with PMC availability noted Dec 2024; https://doi.org/10.1158/1541-7786.MCR-23-0138) (haastrup2024mitochondrialtranslocasetomm22 pages 1-3)
Interpretation: this study supports the hypothesis that, in at least some tumors, increased TOMM22 can act as a functional enabler of mitochondrial biogenesis/respiratory capacity via increased import capacity, rather than being a passive marker of mitochondrial abundance. (haastrup2024mitochondrialtranslocasetomm22 pages 1-3)
A 2023 review essay frames mitochondrial protein import as a regulatable signaling hub, where impairment of import induces adaptive responses inside and outside mitochondria (proteostasis and metabolic responses). While not Tom22-specific, it supports an expert consensus that TOM components (including receptor subunits like Tom22) should be considered in a systems context where changes in import efficiency can engage broader stress/quality-control pathways. (Lionaki et al., 2023; https://doi.org/10.1002/bies.202200160) (lionaki2023mitochondrialproteinimport pages 1-2)
The pancreatic cancer study explicitly proposes TOMM22 as having potential for early diagnostic/prognostic biomarker development and therapeutic targeting in PDAC, based on tumor overexpression, correlation with outcomes, and functional causality in cell models (gain- and loss-of-function) linked to mitochondrial import and OXPHOS-related readouts. (Haastrup et al., 2024; https://doi.org/10.1158/1541-7786.MCR-23-0138) (haastrup2024mitochondrialtranslocasetomm22 pages 1-3)
Separately, a structural/biochemical review highlights that Tom22 participates in apoptosis-related interactions (notably with Bax), and discusses the concept that targeting TOM-complex components and their interactions could be a viable strategy in disease contexts where mitochondrial dysfunction is causal. (Pitt & Buchanan, 2021; https://doi.org/10.3390/cells10051164) (pitt2021abiochemicaland pages 13-15)
A primary research study in yeast mitochondria provides direct evidence that Tom22 can act as a receptor for amyloid-β (Aβ): Aβ binding is reported to be mediated mainly by Tom22 rather than Tom20, and Aβ residues 25–42 were identified as critical for interaction. The authors propose that cytosolic Aβ is recognized by Tom22 and then transferred to Tom40 for translocation. While this is a yeast model, it is frequently used as a tractable platform to dissect TOM-mediated uptake mechanisms relevant to Alzheimer’s-disease-associated mitochondrial Aβ accumulation. (Hu et al., 2018; https://doi.org/10.1074/jbc.ra118.002713) (hu2018mitochondrialaccumulationof pages 1-2)
The Cells review argues that the “structural reliance” of the core TOM complex on Tom22 is consistent with impaired viability observed when Tom22 is deficient (as discussed across model systems and mammalian contexts). The same review synthesizes perturbation evidence supporting Tom22 as an assembly organizer and potential rate-limiting component for complete TOM biogenesis under some conditions. (Pitt & Buchanan, 2021; https://doi.org/10.3390/cells10051164) (pitt2021abiochemicaland pages 13-15, pitt2021abiochemicaland pages 6-9)
A key expert-level point emphasized in the review is that Tom22 is not merely an import receptor but also participates in Bax-mediated apoptosis: inhibition of Tom22–Bax interactions (e.g., via antibody blocking or Tom22 knockdown) is reported to inhibit Bax-mediated apoptosis, suggesting Tom22 can be an actionable node coupling mitochondrial surface machinery to apoptotic execution pathways. (Pitt & Buchanan, 2021; https://doi.org/10.3390/cells10051164) (pitt2021abiochemicaland pages 13-15)
The following extracted figures visually summarize Tom22’s placement within the TOM complex and highlight its structural features/interactome in a review context. (pitt2021abiochemicaland media a23c1074, pitt2021abiochemicaland media 096ec19a, pitt2021abiochemicaland media 626e7aa4)
Human TOMM22 (Q9NS69) encodes hTom22, a single-pass outer mitochondrial membrane subunit of the TOM complex that acts as the central receptor and an assembly-organizing scaffold. Its core role is to coordinate recognition/transfer of mitochondrial precursor proteins from receptor engagement toward passage through the Tom40 pore, and structural work positions Tom22 at the Tom40 dimer interface with a conserved kinked helix and flexible terminal regions. Functional perturbation evidence supports a role for Tom22 as an assembly determinant and, in some contexts, a rate-limiting factor for full TOM complex formation. Beyond canonical import, authoritative synthesis highlights Tom22 as an interaction hub relevant to apoptosis (e.g., Bax-related mechanisms) and metabolic processes (e.g., steroidogenic complexes), consistent with recent frameworks that mitochondrial protein import machinery participates in broader stress-signaling networks. Recent 2024 work advances receptor-level structural organization of the human TOM holo complex and provides disease-context evidence in which TOMM22 overexpression can enhance import-linked respiratory phenotypes and tumor aggressiveness in pancreatic cancer, supporting ongoing interest in TOMM22 as a biomarker and potential therapeutic target. (pitt2021abiochemicaland pages 6-9, pitt2021abiochemicaland pages 13-15, su2024structureofthe pages 1-3, haastrup2024mitochondrialtranslocasetomm22 pages 1-3, lionaki2023mitochondrialproteinimport pages 1-2)
| Category | Summary |
|---|---|
| Identity | TOMM22 encodes the human mitochondrial import receptor subunit TOM22 homolog (hTom22), the central receptor of the TOM complex; this matches UniProt Q9NS69 and the Tom22 family assignment. It is a conserved TOM core component distinct from TOM20/TOM70 receptor subunits. (pitt2021abiochemicaland pages 6-9, su2024structureofthe pages 1-3, haastrup2024mitochondrialtranslocasetomm22 pages 1-3) |
| Localization/topology | hTom22 localizes to the outer mitochondrial membrane as a single-pass amphipathic α-helical protein. Structural work places it between the two Tom40 β-barrels, forming the dimeric interface and stabilizing the complex. Human Tom22 contains a conserved proline-induced kink; the N-terminal cytosolic and C-terminal IMS regions are partly unresolved/flexible in structures, and the human IMS region is glutamine-rich rather than carrying the fungal acidic patch. (pitt2021abiochemicaland pages 6-9, pitt2021abiochemicaland pages 11-12) |
| Molecular function | TOMM22 functions as a major preprotein-binding site and organizational scaffold for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the Tom40 import pore. It participates in import of precursors with N-terminal presequences or contributes to handling broader precursor classes together with Tom20/Tom70. (pitt2021abiochemicaland pages 6-9, su2024structureofthe pages 1-3, haastrup2024mitochondrialtranslocasetomm22 pages 1-3) |
| Complex membership | Human TOM complex contains Tom40, Tom20, Tom22, Tom70, Tom5, Tom6, and Tom7. Tom22 is part of the core TOM complex with Tom40/Tom5/Tom6/Tom7; cryo-EM studies resolved human TOM core structures at ~3.4 Å and a TOM holo complex containing intact Tom20 at ~6 Å. Tom22 is important for assembly state organization, while Tom6 stabilizes and Tom7 destabilizes TOM partly through effects linked to Tom22. (pitt2021abiochemicaland pages 11-12, su2024structureofthe pages 1-3, pitt2021abiochemicaland pages 6-9) |
| Interaction partners | Key partners include Tom40, Tom20, Tom6, Tom7, and likely Tom70 within the import machinery. Outside canonical import, reported interactors include Bax (apoptosis), PINK1/Parkin pathway components, Mfn1, mito BKCa channel, 3βHSD2, P450C11AS, and StAR in steroidogenic contexts. Cross-linked MS supports a Tom20–Tom22 interaction even where density is unresolved. (pitt2021abiochemicaland pages 23-24, pitt2021abiochemicaland pages 15-16, pitt2021abiochemicaland pages 13-15, pitt2021abiochemicaland pages 6-9) |
| Regulation/quality control | Tom22 is a rate-limiting factor for complete TOM assembly in some cell systems; knockdown increases stable TOM assembly intermediates, whereas overexpression promotes assembly and Tom7 integration. Reviews also note regulation through phosphorylation and quality-control pathways including Yme1-mediated degradation and import-stress signaling/mitophagy links. (pitt2021abiochemicaland pages 6-9, pitt2021abiochemicaland pages 23-24) |
| Disease/phenotypes | Reduced or defective Tom22 impairs viability and mitochondrial homeostasis; zebrafish tom22 mutants show hepatocyte apoptosis and abnormal liver organization. In human disease biology, Tom22 contributes to Bax-mediated apoptosis, has been implicated in Parkinson’s disease-related import dysfunction, and is discussed in mitochondrial stress, steroidogenesis, and metabolic disease contexts. HIV-1 protease has been reported to cleave Tom22 in apoptosis-related models. (pitt2021abiochemicaland pages 13-15, pitt2021abiochemicaland pages 23-24, pitt2021abiochemicaland pages 15-16, su2024structureofthe pages 1-3) |
| Recent 2023-2024 developments/applications | 2024 cryo-EM work further defined receptor organization in the human TOM holo complex, supporting simultaneous action of Tom20/Tom22/Tom70 during import. 2024 pancreatic cancer data showed TOMM22 overexpression promotes aggressive growth by enhancing mitochondrial protein import, respiration-associated functions, membrane potential, and ATP production, highlighting biomarker/therapeutic potential. Reviews from 2023 emphasize TOM components, including Tom22, as signaling hubs in mitochondrial import stress responses. (su2024structureofthe pages 1-3, haastrup2024mitochondrialtranslocasetomm22 pages 1-3, lionaki2023mitochondrialproteinimport pages 1-2) |
| Quantitative data | Mammalian mitochondria contain up to ~1500 proteins, with only ~1% mtDNA-encoded; a review estimates ~1100 of ~1500 TOM-imported proteins rely on hTom22 for import. Structural resolutions cited for human TOM include ~3.4 Å for the core complex and ~6 Å for the Tom20-containing holo complex; lower-resolution tetrameric TOM has been observed at ~8.5 Å. In the Aβ study, residues 25–42 were critical for Tom22-mediated recognition in yeast. (pitt2021abiochemicaland pages 13-15, pitt2021abiochemicaland pages 11-12, lionaki2023mitochondrialproteinimport pages 1-2, su2024structureofthe pages 1-3, hu2018mitochondrialaccumulationof pages 1-2) |
Table: This table summarizes the key functional annotation for human TOMM22/ hTom22, including its identity, topology, role in the mitochondrial TOM complex, major interaction partners, disease links, and recent 2023-2024 developments. It is useful as a compact evidence-backed reference for narrative gene annotation.
References
(pitt2021abiochemicaland pages 6-9): Ashley S. Pitt and Susan K. Buchanan. A biochemical and structural understanding of tom complex interactions and implications for human health and disease. Cells, 10:1164, May 2021. URL: https://doi.org/10.3390/cells10051164, doi:10.3390/cells10051164. This article has 46 citations.
(su2024structureofthe pages 1-3): Jiayue Su, Xuyang Tian, Ziyi Wang, Jiawen Yang, Shan Sun, and Sen-Fang Sui. Structure of the intact tom20 receptor in the human translocase of the outer membrane complex. PNAS Nexus, Jun 2024. URL: https://doi.org/10.1093/pnasnexus/pgae269, doi:10.1093/pnasnexus/pgae269. This article has 12 citations and is from a peer-reviewed journal.
(haastrup2024mitochondrialtranslocasetomm22 pages 1-3): Mary Oluwadamilola Haastrup, Kunwar Somesh Vikramdeo, Shashi Anand, Mohammad Aslam Khan, James Elliot Carter, Seema Singh, Ajay Pratap Singh, and Santanu Dasgupta. Mitochondrial translocase tomm22 is overexpressed in pancreatic cancer and promotes aggressive growth by modulating mitochondrial protein import and function. Molecular cancer research : MCR, 22:197-208, Oct 2024. URL: https://doi.org/10.1158/1541-7786.mcr-23-0138, doi:10.1158/1541-7786.mcr-23-0138. This article has 10 citations.
(pitt2021abiochemicaland pages 13-15): Ashley S. Pitt and Susan K. Buchanan. A biochemical and structural understanding of tom complex interactions and implications for human health and disease. Cells, 10:1164, May 2021. URL: https://doi.org/10.3390/cells10051164, doi:10.3390/cells10051164. This article has 46 citations.
(pitt2021abiochemicaland pages 15-16): Ashley S. Pitt and Susan K. Buchanan. A biochemical and structural understanding of tom complex interactions and implications for human health and disease. Cells, 10:1164, May 2021. URL: https://doi.org/10.3390/cells10051164, doi:10.3390/cells10051164. This article has 46 citations.
(lionaki2023mitochondrialproteinimport pages 1-2): Eirini Lionaki, Ilias Gkikas, and Nektarios Tavernarakis. Mitochondrial protein import machinery conveys stress signals to the cytosol and beyond. BioEssays, Jan 2023. URL: https://doi.org/10.1002/bies.202200160, doi:10.1002/bies.202200160. This article has 14 citations and is from a peer-reviewed journal.
(hu2018mitochondrialaccumulationof pages 1-2): Wenxin Hu, Zhiming Wang, and Hongjin Zheng. Mitochondrial accumulation of amyloid β (aβ) peptides requires tomm22 as a main aβ receptor in yeast. Journal of Biological Chemistry, 293:12681-12689, Aug 2018. URL: https://doi.org/10.1074/jbc.ra118.002713, doi:10.1074/jbc.ra118.002713. This article has 51 citations and is from a domain leading peer-reviewed journal.
(pitt2021abiochemicaland pages 11-12): Ashley S. Pitt and Susan K. Buchanan. A biochemical and structural understanding of tom complex interactions and implications for human health and disease. Cells, 10:1164, May 2021. URL: https://doi.org/10.3390/cells10051164, doi:10.3390/cells10051164. This article has 46 citations.
(pitt2021abiochemicaland media a23c1074): Ashley S. Pitt and Susan K. Buchanan. A biochemical and structural understanding of tom complex interactions and implications for human health and disease. Cells, 10:1164, May 2021. URL: https://doi.org/10.3390/cells10051164, doi:10.3390/cells10051164. This article has 46 citations.
(pitt2021abiochemicaland media 096ec19a): Ashley S. Pitt and Susan K. Buchanan. A biochemical and structural understanding of tom complex interactions and implications for human health and disease. Cells, 10:1164, May 2021. URL: https://doi.org/10.3390/cells10051164, doi:10.3390/cells10051164. This article has 46 citations.
(pitt2021abiochemicaland media 626e7aa4): Ashley S. Pitt and Susan K. Buchanan. A biochemical and structural understanding of tom complex interactions and implications for human health and disease. Cells, 10:1164, May 2021. URL: https://doi.org/10.3390/cells10051164, doi:10.3390/cells10051164. This article has 46 citations.
(pitt2021abiochemicaland pages 23-24): Ashley S. Pitt and Susan K. Buchanan. A biochemical and structural understanding of tom complex interactions and implications for human health and disease. Cells, 10:1164, May 2021. URL: https://doi.org/10.3390/cells10051164, doi:10.3390/cells10051164. This article has 46 citations.
id: Q9NS69
gene_symbol: TOMM22
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: TOMM22 encodes hTom22, a single-pass mitochondrial outer membrane receptor and scaffold subunit of the TOM complex. TOMM22 recognizes mitochondrial precursor proteins, helps transfer them toward the TOMM40 pore, and supports TOM complex assembly and stability; its transporter annotation is best interpreted as contribution to TOM complex protein import rather than standalone pore activity.
existing_annotations:
- term:
id: GO:0030150
label: protein import into mitochondrial matrix
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Correct as a TOM-complex entry step for matrix-destined mitochondrial preproteins. TOMM22 is a receptor/scaffold that recognizes precursors and transfers them toward the TOMM40 pore before downstream inner-membrane import.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: The **TOM complex** is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
- term:
id: GO:0005742
label: mitochondrial outer membrane translocase complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Correct. TOMM22 is a core receptor/scaffold subunit of the TOM complex / mitochondrial outer membrane translocase complex.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: Human **TOMM22 (Q9NS69)** encodes **hTom22**, a **single-pass outer mitochondrial membrane** subunit of the TOM complex that acts as the **central receptor** and an **assembly-organizing scaffold**.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
- term:
id: GO:0008320
label: protein transmembrane transporter activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: contributes_to
review:
summary: Accepted as contribution to TOM complex protein transmembrane transporter activity. TOMM22 is the receptor/scaffold that transfers precursors toward the TOMM40 pore, not the pore-forming subunit by itself.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Retain only as complex contribution; TOMM40 is the conducting pore, whereas TOMM22 provides receptor/scaffold function needed for import.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: The 2024 PNAS Nexus study (Su et al.) reports a **human TOM holo complex cryo-EM structure** including intact Tom20 at **~6 Å** and explicitly frames Tom22 as one of the TOM receptors that recognize targeting signals and collaborate in translocation.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Correct. TOMM22 is a single-pass mitochondrial outer membrane component of the TOM complex.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
- term:
id: GO:0006886
label: intracellular protein transport
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: Correct pathway family but too broad. TOMM22 specifically functions in TOM-complex mitochondrial protein import.
action: MARK_AS_OVER_ANNOTATED
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Use mitochondrial protein import/localization and TOM complex terms rather than generic intracellular protein transport.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: The **TOM complex** is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:12198123
review:
summary: Protein binding is too generic for TOMM22. The informative functions are precursor/targeting-sequence recognition and TOM complex scaffold membership.
action: MARK_AS_OVER_ANNOTATED
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Documented interactions should be captured by TOM complex and targeting-sequence/preprotein receptor annotations rather than generic protein binding.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 'Within this machinery, **TOMM22/hTom22** is described as the **central receptor** of the TOM complex, functioning both as:'
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 1) a **major preprotein-binding site** and transfer platform, and
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25556234
review:
summary: Protein binding is too generic for TOMM22. The informative functions are precursor/targeting-sequence recognition and TOM complex scaffold membership.
action: MARK_AS_OVER_ANNOTATED
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Documented interactions should be captured by TOM complex and targeting-sequence/preprotein receptor annotations rather than generic protein binding.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 'Within this machinery, **TOMM22/hTom22** is described as the **central receptor** of the TOM complex, functioning both as:'
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 1) a **major preprotein-binding site** and transfer platform, and
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
review:
summary: Protein binding is too generic for TOMM22. The informative functions are precursor/targeting-sequence recognition and TOM complex scaffold membership.
action: MARK_AS_OVER_ANNOTATED
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Documented interactions should be captured by TOM complex and targeting-sequence/preprotein receptor annotations rather than generic protein binding.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 'Within this machinery, **TOMM22/hTom22** is described as the **central receptor** of the TOM complex, functioning both as:'
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 1) a **major preprotein-binding site** and transfer platform, and
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32814053
review:
summary: Protein binding is too generic for TOMM22. The informative functions are precursor/targeting-sequence recognition and TOM complex scaffold membership.
action: MARK_AS_OVER_ANNOTATED
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Documented interactions should be captured by TOM complex and targeting-sequence/preprotein receptor annotations rather than generic protein binding.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 'Within this machinery, **TOMM22/hTom22** is described as the **central receptor** of the TOM complex, functioning both as:'
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 1) a **major preprotein-binding site** and transfer platform, and
- term:
id: GO:0030150
label: protein import into mitochondrial matrix
evidence_type: TAS
original_reference_id: PMID:10982837
review:
summary: Correct as a TOM-complex entry step for matrix-destined mitochondrial preproteins. TOMM22 is a receptor/scaffold that recognizes precursors and transfers them toward the TOMM40 pore before downstream inner-membrane import.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: The **TOM complex** is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: GO_REF:0000052
review:
summary: Correct but broad. TOMM22 is specifically localized to the mitochondrial outer membrane/TOM complex.
action: MARK_AS_OVER_ANNOTATED
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Prefer mitochondrial outer membrane and TOM complex annotations over generic mitochondrion.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: EXP
original_reference_id: PMID:10982837
review:
summary: Correct. TOMM22 is a single-pass mitochondrial outer membrane component of the TOM complex.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
- term:
id: GO:0030150
label: protein import into mitochondrial matrix
evidence_type: IDA
original_reference_id: PMID:15644312
review:
summary: Correct as a TOM-complex entry step for matrix-destined mitochondrial preproteins. TOMM22 is a receptor/scaffold that recognizes precursors and transfers them toward the TOMM40 pore before downstream inner-membrane import.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: The **TOM complex** is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: NAS
original_reference_id: PMID:18331822
review:
summary: Correct. TOMM22 is a single-pass mitochondrial outer membrane component of the TOM complex.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
- term:
id: GO:0045040
label: protein insertion into mitochondrial outer membrane
evidence_type: NAS
original_reference_id: PMID:18331822
review:
summary: Supported as a TOM-complex assembly/import pathway role, but TOMM22 is primarily the TOM receptor/scaffold rather than a general outer-membrane protein insertase.
action: KEEP_AS_NON_CORE
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Keep as non-core because TOMM22 affects TOM assembly and insertion of TOM-related substrates, while the core function is preprotein receptor/scaffold activity.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: Functional perturbation evidence supports a role for Tom22 as an assembly determinant and, in some contexts, a rate-limiting factor for full TOM complex formation.
- term:
id: GO:0140596
label: TOM complex
evidence_type: NAS
original_reference_id: PMID:18331822
review:
summary: Correct. TOMM22 is a core receptor/scaffold subunit of the TOM complex / mitochondrial outer membrane translocase complex.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: Human **TOMM22 (Q9NS69)** encodes **hTom22**, a **single-pass outer mitochondrial membrane** subunit of the TOM complex that acts as the **central receptor** and an **assembly-organizing scaffold**.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: HTP
original_reference_id: PMID:34800366
review:
summary: Correct but broad. TOMM22 is specifically localized to the mitochondrial outer membrane/TOM complex.
action: MARK_AS_OVER_ANNOTATED
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Prefer mitochondrial outer membrane and TOM complex annotations over generic mitochondrion.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
- term:
id: GO:0030943
label: mitochondrion targeting sequence binding
evidence_type: IDA
original_reference_id: PMID:35733257
review:
summary: Correct and core. TOMM22 functions as a major mitochondrial preprotein/targeting-signal binding receptor in the TOM complex.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 1) a **major preprotein-binding site** and transfer platform, and
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: The 2024 PNAS Nexus study (Su et al.) reports a **human TOM holo complex cryo-EM structure** including intact Tom20 at **~6 Å** and explicitly frames Tom22 as one of the TOM receptors that recognize targeting signals and collaborate in translocation.
- term:
id: GO:0016020
label: membrane
evidence_type: HDA
original_reference_id: PMID:19946888
review:
summary: Correct but very broad. TOMM22 is specifically a mitochondrial outer membrane TOM complex subunit.
action: MARK_AS_OVER_ANNOTATED
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Use mitochondrial outer membrane/TOM complex annotations instead of generic membrane.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-5205661
review:
summary: Correct. TOMM22 is a single-pass mitochondrial outer membrane component of the TOM complex.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
- term:
id: GO:0016020
label: membrane
evidence_type: IDA
original_reference_id: PMID:15644312
review:
summary: Correct but very broad. TOMM22 is specifically a mitochondrial outer membrane TOM complex subunit.
action: MARK_AS_OVER_ANNOTATED
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Use mitochondrial outer membrane/TOM complex annotations instead of generic membrane.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
- term:
id: GO:0008320
label: protein transmembrane transporter activity
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: Accepted as contribution to TOM complex protein transmembrane transporter activity. TOMM22 is the receptor/scaffold that transfers precursors toward the TOMM40 pore, not the pore-forming subunit by itself.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Retain only as complex contribution; TOMM40 is the conducting pore, whereas TOMM22 provides receptor/scaffold function needed for import.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: The 2024 PNAS Nexus study (Su et al.) reports a **human TOM holo complex cryo-EM structure** including intact Tom20 at **~6 Å** and explicitly frames Tom22 as one of the TOM receptors that recognize targeting signals and collaborate in translocation.
- term:
id: GO:0005742
label: mitochondrial outer membrane translocase complex
evidence_type: IDA
original_reference_id: PMID:12198123
review:
summary: Correct. TOMM22 is a core receptor/scaffold subunit of the TOM complex / mitochondrial outer membrane translocase complex.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: Human **TOMM22 (Q9NS69)** encodes **hTom22**, a **single-pass outer mitochondrial membrane** subunit of the TOM complex that acts as the **central receptor** and an **assembly-organizing scaffold**.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
- term:
id: GO:0005742
label: mitochondrial outer membrane translocase complex
evidence_type: IDA
original_reference_id: PMID:15644312
review:
summary: Correct. TOMM22 is a core receptor/scaffold subunit of the TOM complex / mitochondrial outer membrane translocase complex.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: Human **TOMM22 (Q9NS69)** encodes **hTom22**, a **single-pass outer mitochondrial membrane** subunit of the TOM complex that acts as the **central receptor** and an **assembly-organizing scaffold**.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
- term:
id: GO:0008320
label: protein transmembrane transporter activity
evidence_type: TAS
original_reference_id: PMID:15644312
review:
summary: Accepted as contribution to TOM complex protein transmembrane transporter activity. TOMM22 is the receptor/scaffold that transfers precursors toward the TOMM40 pore, not the pore-forming subunit by itself.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Retain only as complex contribution; TOMM40 is the conducting pore, whereas TOMM22 provides receptor/scaffold function needed for import.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: The 2024 PNAS Nexus study (Su et al.) reports a **human TOM holo complex cryo-EM structure** including intact Tom20 at **~6 Å** and explicitly frames Tom22 as one of the TOM receptors that recognize targeting signals and collaborate in translocation.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14557246
review:
summary: Protein binding is too generic for TOMM22. The informative functions are precursor/targeting-sequence recognition and TOM complex scaffold membership.
action: MARK_AS_OVER_ANNOTATED
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
reason: Documented interactions should be captured by TOM complex and targeting-sequence/preprotein receptor annotations rather than generic protein binding.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 'Within this machinery, **TOMM22/hTom22** is described as the **central receptor** of the TOM complex, functioning both as:'
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 1) a **major preprotein-binding site** and transfer platform, and
- term:
id: GO:0070585
label: protein localization to mitochondrion
evidence_type: TAS
original_reference_id: PMID:14557246
review:
summary: Correct. TOMM22 is a central TOM-complex receptor/scaffold enabling localization/import of nuclear-encoded mitochondrial precursor proteins.
action: ACCEPT
additional_reference_ids:
- file:human/TOMM22/TOMM22-deep-research-falcon.md
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: The **TOM complex** is the primary entry gate for most nucleus-encoded mitochondrial proteins into mitochondria.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10982837
title: Identification and functional analysis of human Tom22 for protein import into mitochondria.
findings: []
- id: PMID:12198123
title: Insertion and assembly of human tom7 into the preprotein translocase complex of the outer mitochondrial membrane.
findings: []
- id: PMID:14557246
title: AIP is a mitochondrial import mediator that binds to both import receptor Tom20 and preproteins.
findings: []
- id: PMID:15644312
title: Dissection of the mitochondrial import and assembly pathway for human Tom40.
findings: []
- id: PMID:18331822
title: Identification of Tom5 and Tom6 in the preprotein translocase complex of human mitochondrial outer membrane.
findings: []
- id: PMID:19946888
title: Defining the membrane proteome of NK cells.
findings: []
- id: PMID:25556234
title: New host factors important for respiratory syncytial virus (RSV) replication revealed by a novel microfluidics screen for interactors of matrix (M) protein.
findings: []
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
- id: PMID:32814053
title: Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
findings: []
- id: PMID:34800366
title: Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context.
findings: []
- id: PMID:35733257
title: Structural basis of Tom20 and Tom22 cytosolic domains as the human TOM complex receptors.
findings: []
- id: Reactome:R-HSA-5205661
title: Pink1 is recruited from the cytoplasm to the mitochondria
findings: []
- id: file:human/TOMM22/TOMM22-deep-research-falcon.md
title: Falcon deep research report for human TOMM22
findings: []
core_functions:
- description: TOMM22 is the central receptor/scaffold subunit of the mitochondrial outer membrane TOM complex, binding mitochondrial precursor proteins and transferring them toward the TOMM40 pore while stabilizing TOM complex assembly.
supported_by:
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: Human **TOMM22 (Q9NS69)** encodes **hTom22**, a **single-pass outer mitochondrial membrane** subunit of the TOM complex that acts as the **central receptor** and an **assembly-organizing scaffold**.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: TOMM22 functions as a **major preprotein-binding site** and **organizational scaffold** for the TOM complex, helping recognize mitochondrial precursor proteins and transfer them toward the **Tom40 import pore**.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: 2) an **organizational scaffold** required for correct **TOM complex assembly** and stability.
- reference_id: file:human/TOMM22/TOMM22-deep-research-falcon.md
supporting_text: hTom22 is an **outer mitochondrial membrane (OMM)** component and is structurally a **single-pass amphipathic α-helical** protein.
molecular_function:
id: GO:0030943
label: mitochondrion targeting sequence binding
directly_involved_in:
- id: GO:0070585
label: protein localization to mitochondrion
- id: GO:0030150
label: protein import into mitochondrial matrix
locations:
- id: GO:0005741
label: mitochondrial outer membrane
in_complex:
id: GO:0140596
label: TOM complex
proposed_new_terms: []
suggested_questions:
- question: Which human mitochondrial precursor classes rely most directly on TOMM22 rather than TOMM20 or TOMM70 receptor engagement?
experts: []
- question: How separable are TOMM22 precursor-receptor functions from its TOM complex assembly/stability role in human cells?
experts: []
suggested_experiments:
- hypothesis: TOMM22 targeting-sequence binding and TOM complex scaffold functions are separable.
description: Use TOMM22 cytosolic-domain and transmembrane/interface mutants in rescue cells, then compare precursor binding, TOM complex assembly by BN-PAGE, and import of presequence versus internal-signal substrates.
- hypothesis: TOMM22 abundance can become rate-limiting for TOM complex assembly and mitochondrial protein import in high-biogenesis contexts.
description: Titrate TOMM22 expression in human cells and measure TOM assembly intermediates, Tom40/Tom7 incorporation, and import flux for representative matrix, inner-membrane, and outer-membrane substrates.