UQCRH (ubiquinol-cytochrome c reductase hinge protein; cytochrome b-c1 complex subunit 6, also called Complex III subunit 6/VIII or the "hinge" protein) is a small (91-residue precursor; 14-91 mature) nuclear-encoded structural subunit of the mitochondrial respiratory chain Complex III (cytochrome bc1 / ubiquinol-cytochrome c oxidoreductase). It is imported into mitochondria via an unusually acidic N-terminal transit peptide and resides as a peripheral membrane protein on the intermembrane-space side of the mitochondrial inner membrane. UQCRH is one of the low-molecular-weight, non-catalytic subunits of the obligate CIII dimer; the catalytic redox centres are carried by cytochrome b (MT-CYB), cytochrome c1 (CYC1) and the Rieske iron-sulfur protein (UQCRFS1). The acidic hinge protein forms the docking interface that "hinges" cytochrome c to cytochrome c1, and is required for correct interaction and electron transfer between cytochrome c1 and soluble cytochrome c. Loss of UQCRH destabilizes the assembled holoenzyme, reduces Complex III catalytic activity, and causes mitochondrial complex III deficiency (nuclear type 11), presenting with lactic acidosis, hyperammonaemia, hypoglycaemia and encephalopathy. Its overall role is therefore structural/assembly and electron-transfer facilitation within Complex III during aerobic respiration and oxidative phosphorylation.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0045275
respiratory chain complex III
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetically-inferred assignment of UQCRH as a component of respiratory chain Complex III (cytochrome bc1). This is the correct, specific complex for this subunit and is strongly supported by structural, biochemical and disease evidence.
Reason: UQCRH is a bona fide low-molecular-weight subunit of the 11-subunit cytochrome b-c1 complex (CIII); this is confirmed experimentally by cryo-EM structure and by the CIII deficiency caused by its loss. GO:0045275 is the current, correct term (the legacy GO:0005750 is obsolete).
Supporting Evidence:
PMID:34750991
encodes a structural complex III (CIII) subunit
file:human/UQCRH/UQCRH-uniprot.txt
6 low-molecular weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
|
|
GO:0006122
mitochondrial electron transport, ubiquinol to cytochrome c
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetically-inferred involvement in the Complex III reaction that transfers electrons from ubiquinol to cytochrome c. This is the core biological process of Complex III and the most specific correct BP term for this subunit.
Reason: As a subunit of CIII, UQCRH participates in the ubiquinol-to-cytochrome-c electron transport reaction; the hinge protein specifically mediates the cytochrome c1-cytochrome c docking/electron-transfer step. This is the representative core BP.
Supporting Evidence:
PMID:34750991
CIII transports electrons from ubiquinol to cytochrome c and translocates protons across the inner mitochondrial membrane
PMID:2826252
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase in
|
|
GO:0005743
mitochondrial inner membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Subcellular-location mapping to the mitochondrial inner membrane, consistent with UniProt annotation of UQCRH as a peripheral inner-membrane protein on the intermembrane side.
Reason: Correct and specific localization for a CIII subunit; independently supported by experimental IDA (PMID:28844695, ComplexPortal) and by UniProt subcellular location.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
|
|
GO:0006122
mitochondrial electron transport, ubiquinol to cytochrome c
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: InterPro2GO mapping (IPR003422, Cyt_b-c1_6 / hinge domain) to the CIII electron transport process. Duplicates the IBA core BP term via an orthogonal, domain-based line of evidence.
Reason: The hinge-domain signature correctly implies participation in ubiquinol-to-cytochrome-c electron transport; consistent with the IBA annotation. Duplicate of the core BP is acceptable.
Supporting Evidence:
PMID:2826252
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase in
|
|
GO:0016020
membrane
|
IEA
GO_REF:0000117 |
MARK AS OVER ANNOTATED |
Summary: Generic ARBA electronic annotation to "membrane". This is a high-level parent of the specific and experimentally supported mitochondrial inner membrane term.
Reason: Not wrong, but uninformatively general: the specific location (GO:0005743 mitochondrial inner membrane) is well established, so the bare "membrane" term adds no information and should not be treated as a core localization.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
|
|
GO:0098803
respiratory chain complex
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: ARBA electronic annotation placing UQCRH in a (generic) respiratory chain complex. Correct but is the parent of the specific term respiratory chain complex III (GO:0045275).
Reason: Accurate but less specific than GO:0045275, which captures the exact complex. Retain as a valid but non-core (redundant-parent) annotation.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
6 low-molecular weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
|
|
GO:1902600
proton transmembrane transport
|
IEA
GO_REF:0000108 |
KEEP AS NON CORE |
Summary: Logically-inferred BP from the quinol-cytochrome-c reductase activity term: Complex III couples electron transfer to translocation of protons across the inner membrane in the Q cycle.
Reason: The proton translocation is a genuine, complex-level consequence of the CIII reaction, but UQCRH is a non-catalytic hinge subunit that does not itself conduct protons; this is a context/complex-level role rather than the subunit's core function. Keep as non-core.
Supporting Evidence:
PMID:34750991
CIII transports electrons from ubiquinol to cytochrome c and translocates protons across the inner mitochondrial membrane
Reactome:R-HSA-164651
complex III transfers electrons from ubiquinol to cytochrome c, linking this process to translocation of protons across the membrane
|
|
GO:0005515
protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
MARK AS OVER ANNOTATED |
Summary: Bare "protein binding" from a proteome-scale binary interactome (Y2H) screen. The reported partners (e.g. ARL8A, RNF24, ENTREP3) are not Complex III subunits.
Reason: "Protein binding" is uninformative and does not describe a molecular function; the high-throughput binary interactors are cytosolic/endosomal proteins with no obvious physiological relationship to a mitochondrial inner-membrane CIII subunit, so this is likely a non-specific/spurious interaction. Retained (not removed, per policy for experimental IPIs) but flagged as over-annotation.
Supporting Evidence:
PMID:25416956
A proteome-scale map of the human interactome network.
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
MARK AS OVER ANNOTATED |
Summary: Bare "protein binding" from a reference binary-interactome (HuRI, Y2H) map. Partners (e.g. NDFIP1, NDFIP2, PRRG1) are not Complex III components.
Reason: Same rationale as the other protein-binding IPI: uninformative MF term and non-CIII high-throughput binary partners with no established physiological role for this inner-membrane subunit. Retained but flagged as over-annotation.
Supporting Evidence:
PMID:32296183
A reference map of the human binary protein interactome.
|
|
GO:0005743
mitochondrial inner membrane
|
IDA
PMID:28844695 Architecture of Human Mitochondrial Respiratory Megacomplex ... |
ACCEPT |
Summary: Direct assay (ComplexPortal, from cryo-EM of the human respiratory megacomplex) localizing UQCRH to the mitochondrial inner membrane as part of Complex III.
Reason: Experimental (IDA) localization to the correct, specific compartment; the cryo-EM structure resolves UQCRH within the membrane-embedded CIII dimer. Core localization.
Supporting Evidence:
PMID:28844695
are positioned to accept electrons on the surface of the c1 state CIII dimer
|
|
GO:0006122
mitochondrial electron transport, ubiquinol to cytochrome c
|
NAS
PMID:28844695 Architecture of Human Mitochondrial Respiratory Megacomplex ... |
ACCEPT |
Summary: ComplexPortal (NAS) involvement of UQCRH in the ubiquinol-to-cytochrome-c electron transport reaction of Complex III.
Reason: Correct core BP for a CIII subunit; the megacomplex structure shows cytochrome c docking on the c1-state CIII dimer, the reaction in which UQCRH's hinge role operates. Duplicate of the core BP term.
Supporting Evidence:
PMID:28844695
are positioned to accept electrons on the surface of the c1 state CIII dimer
|
|
GO:0045275
respiratory chain complex III
|
IPI
PMID:28844695 Architecture of Human Mitochondrial Respiratory Megacomplex ... |
ACCEPT |
Summary: ComplexPortal (IPI) assignment of UQCRH as a part of respiratory chain Complex III, based on the cryo-EM megacomplex structure.
Reason: Experimentally supported membership of the correct, specific complex; consistent with the IBA annotation and with UniProt's 11-subunit CIII composition. Core CC.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
6 low-molecular weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
|
|
GO:0045333
cellular respiration
|
NAS
PMID:28844695 Architecture of Human Mitochondrial Respiratory Megacomplex ... |
KEEP AS NON CORE |
Summary: ComplexPortal (NAS) involvement in cellular respiration, reflecting Complex III's role in the respiratory electron transport chain.
Reason: Correct high-level BP context, but broader than the specific core term GO:0006122; keep as valid non-core.
Supporting Evidence:
PMID:34750991
CIII transports electrons from ubiquinol to cytochrome c and translocates protons across the inner mitochondrial membrane
|
|
GO:0005739
mitochondrion
|
HTP
PMID:34800366 Quantitative high-confidence human mitochondrial proteome an... |
KEEP AS NON CORE |
Summary: High-throughput mitochondrial proteome localization to the mitochondrion. Correct but a generic parent of the specific inner-membrane localization.
Reason: Accurate compartment but less specific than GO:0005743 (mitochondrial inner membrane), which is experimentally established; keep as valid non-core.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
|
|
GO:0005743
mitochondrial inner membrane
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: Sequence-similarity transfer (from ortholog UniProtKB:P00127) of the mitochondrial inner membrane localization.
Reason: Correct, specific localization; consistent with experimental IDA and UniProt. Duplicate of the core CC term via orthology.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
|
|
GO:0008121
quinol-cytochrome-c reductase activity
|
IMP
PMID:34750991 Characterising a homozygous two-exon deletion in UQCRH: comp... |
MARK AS OVER ANNOTATED |
Summary: IMP based on the homozygous two-exon UQCRH deletion, which reduces Complex III (quinol-cytochrome-c reductase) activity to ~50-60% of control. This is the whole-complex catalytic activity; UQCRH is a non-catalytic structural/hinge subunit, so the loss of activity reflects a structural/assembly requirement, not catalysis by UQCRH itself.
Reason: The catalytic centres of CIII are carried by cytochrome b (MT-CYB), cytochrome c1 (CYC1) and the Rieske protein (UQCRFS1); UQCRH is explicitly a structural subunit whose precise function "remains to be fully elucidated" and which "hinges" cytochrome c to c1. The IMP phenotype (loss of UQCRH lowers CIII activity) is fully explained by a structural/assembly role, and does not demonstrate that UQCRH itself enables quinol-cytochrome-c reductase catalysis. Assigning the complex's catalytic MF to this non-catalytic subunit is an over-annotation; the subunit's MF is better captured as structural molecule activity (GO:0005198) contributing to the complex activity. Retained (experimental) but flagged.
Supporting Evidence:
PMID:34750991
confirmed a specific decrease of CIII activity to approximately 60% compared to control cell lines
PMID:34750991
remains to be fully elucidated
PMID:2826252
and 'hinges' cytochrome c with cytochrome c1
|
|
GO:0005739
mitochondrion
|
HDA
PMID:20833797 Phosphoproteome analysis of functional mitochondria isolated... |
KEEP AS NON CORE |
Summary: High-throughput direct assay (mitochondrial phosphoproteome of human muscle) localizing UQCRH to the mitochondrion.
Reason: Correct but generic parent of the specific inner-membrane localization; keep as valid non-core.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
|
|
GO:0005743
mitochondrial inner membrane
|
TAS
Reactome:R-HSA-164651 |
ACCEPT |
Summary: Reactome (TAS) localization to the mitochondrial inner membrane, from the pathway describing electron transfer from ubiquinol to cytochrome c by Complex III.
Reason: Correct, specific localization consistent with experimental and UniProt evidence. Duplicate of the core CC term.
Supporting Evidence:
Reactome:R-HSA-164651
complex III transfers electrons from ubiquinol to cytochrome c, linking this process to translocation of protons across the membrane
|
|
GO:0005743
mitochondrial inner membrane
|
TAS
Reactome:R-HSA-9906017 |
ACCEPT |
Summary: Reactome (TAS) inner-membrane localization from the CIII assembly pathway (UQCRFS1 processing). Correct localization for the assembled complex context.
Reason: Correct, specific localization; consistent with all other lines of evidence. Duplicate of the core CC term.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
|
|
GO:0005743
mitochondrial inner membrane
|
TAS
Reactome:R-HSA-9906042 |
ACCEPT |
Summary: Reactome (TAS) inner-membrane localization from the CIII assembly pathway (TTC19 clearance of UQCRFS1 fragments). Correct localization for the complex context.
Reason: Correct, specific localization; consistent with all other evidence. Duplicate of the core CC term.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
|
|
GO:0006119
oxidative phosphorylation
|
TAS
PMID:2826252 An extremely acidic amino-terminal presequence of the precur... |
KEEP AS NON CORE |
Summary: TAS involvement in oxidative phosphorylation, reflecting Complex III's place in the OXPHOS electron transport chain that drives ATP synthesis.
Reason: Correct high-level BP context but broader than the specific core term GO:0006122; keep as valid non-core.
Supporting Evidence:
PMID:34750991
CIII transports electrons from ubiquinol to cytochrome c and translocates protons across the inner mitochondrial membrane
|
|
GO:0008121
quinol-cytochrome-c reductase activity
|
TAS
PMID:2826252 An extremely acidic amino-terminal presequence of the precur... |
MARK AS OVER ANNOTATED |
Summary: TAS (PINC) assignment of quinol-cytochrome-c reductase activity, i.e. the whole Complex III catalytic activity, to UQCRH. UQCRH is the non-catalytic hinge subunit.
Reason: As with the IMP annotation to the same term, this attributes the complex's catalytic MF to a structural, non-catalytic subunit. The 1987 paper itself describes UQCRH only as a subunit that "hinges" cytochrome c to c1, not as the catalytic entity. Better represented as structural molecule activity contributing to the complex activity; flagged as over-annotation.
Supporting Evidence:
PMID:2826252
and 'hinges' cytochrome c with cytochrome c1
|
|
GO:0009060
aerobic respiration
|
TAS
PMID:2826252 An extremely acidic amino-terminal presequence of the precur... |
KEEP AS NON CORE |
Summary: TAS involvement in aerobic respiration, reflecting the role of the ubiquinol-cytochrome-c reductase in the aerobic respiratory chain.
Reason: Correct high-level BP context but broader than the specific core term GO:0006122; keep as valid non-core.
Supporting Evidence:
PMID:2826252
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase in
|
|
GO:0098803
respiratory chain complex
|
TAS
PMID:2826252 An extremely acidic amino-terminal presequence of the precur... |
KEEP AS NON CORE |
Summary: TAS assignment of UQCRH to a respiratory chain complex. Correct but generic parent of the specific respiratory chain complex III term.
Reason: Accurate but less specific than GO:0045275 (respiratory chain complex III); keep as valid non-core.
Supporting Evidence:
PMID:2826252
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase in
|
Q: Does UQCRH have any role beyond CIII assembly/structure and cytochrome c docking (e.g. a regulatory or supercomplex-organizing role), given the altered supercomplex distribution observed upon its loss?
Experiment: Structure-guided mutagenesis of the acidic N-terminal region and the cytochrome c docking surface of UQCRH to quantify effects on cytochrome c1-cytochrome c electron transfer versus overall CIII assembly and stability.
Hypothesis: The acidic hinge region of UQCRH is specifically required for cytochrome c docking and c1-to-c electron transfer, separable from its contribution to CIII holoenzyme assembly/stability.
enables GO:0008121 annotations (IMP PMID:34750991; TAS PMID:2826252) attribute the WHOLE-COMPLEX activity to the subunit. UQCRH is non-catalytic, so enables is an over-annotation of the subunit's function. IMP shows deletion reduces CIII activity (consistent with structural/assembly role) but does not show UQCRH itself is the catalytic entity → MODIFY toward structural molecule activity / MARK_AS_OVER_ANNOTATED. IMP not verifiable-as-catalytic; keep as over-annotated (do not REMOVE experimental).protein binding IPIs (PMID:25416956, PMID:32296183): high-throughput Y2H binary interactions with non-CIII proteins (ARL8A, ENTREP3, NDFIP1/2, PRRG1, RNF24). MARK_AS_OVER_ANNOTATED (uninformative + likely non-physiological for a mito inner-membrane subunit).id: P07919
gene_symbol: UQCRH
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
UQCRH (ubiquinol-cytochrome c reductase hinge protein; cytochrome b-c1 complex
subunit 6, also called Complex III subunit 6/VIII or the "hinge" protein) is a
small (91-residue precursor; 14-91 mature) nuclear-encoded structural subunit of
the mitochondrial respiratory chain Complex III (cytochrome bc1 / ubiquinol-cytochrome
c oxidoreductase). It is imported into mitochondria via an unusually acidic N-terminal
transit peptide and resides as a peripheral membrane protein on the intermembrane-space
side of the mitochondrial inner membrane. UQCRH is one of the low-molecular-weight,
non-catalytic subunits of the obligate CIII dimer; the catalytic redox centres are
carried by cytochrome b (MT-CYB), cytochrome c1 (CYC1) and the Rieske iron-sulfur
protein (UQCRFS1). The acidic hinge protein forms the docking interface that
"hinges" cytochrome c to cytochrome c1, and is required for correct interaction and
electron transfer between cytochrome c1 and soluble cytochrome c. Loss of UQCRH
destabilizes the assembled holoenzyme, reduces Complex III catalytic activity, and
causes mitochondrial complex III deficiency (nuclear type 11), presenting with lactic
acidosis, hyperammonaemia, hypoglycaemia and encephalopathy. Its overall role is
therefore structural/assembly and electron-transfer facilitation within Complex III
during aerobic respiration and oxidative phosphorylation.
existing_annotations:
- term:
id: GO:0045275
label: respiratory chain complex III
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: part_of
review:
summary: >-
Phylogenetically-inferred assignment of UQCRH as a component of respiratory
chain Complex III (cytochrome bc1). This is the correct, specific complex for
this subunit and is strongly supported by structural, biochemical and disease
evidence.
action: ACCEPT
reason: >-
UQCRH is a bona fide low-molecular-weight subunit of the 11-subunit cytochrome
b-c1 complex (CIII); this is confirmed experimentally by cryo-EM structure and
by the CIII deficiency caused by its loss. GO:0045275 is the current, correct
term (the legacy GO:0005750 is obsolete).
supported_by:
- reference_id: PMID:34750991
supporting_text: >-
encodes a structural complex III (CIII) subunit
- reference_id: file:human/UQCRH/UQCRH-uniprot.txt
supporting_text: >-
6 low-molecular
weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
- term:
id: GO:0006122
label: mitochondrial electron transport, ubiquinol to cytochrome c
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
Phylogenetically-inferred involvement in the Complex III reaction that transfers
electrons from ubiquinol to cytochrome c. This is the core biological process
of Complex III and the most specific correct BP term for this subunit.
action: ACCEPT
reason: >-
As a subunit of CIII, UQCRH participates in the ubiquinol-to-cytochrome-c
electron transport reaction; the hinge protein specifically mediates the
cytochrome c1-cytochrome c docking/electron-transfer step. This is the
representative core BP.
supported_by:
- reference_id: PMID:34750991
supporting_text: >-
CIII transports electrons from ubiquinol to cytochrome c and translocates
protons across the inner mitochondrial membrane
- reference_id: PMID:2826252
supporting_text: >-
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase
in
- term:
id: GO:0005743
label: mitochondrial inner membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
Subcellular-location mapping to the mitochondrial inner membrane, consistent
with UniProt annotation of UQCRH as a peripheral inner-membrane protein on the
intermembrane side.
action: ACCEPT
reason: >-
Correct and specific localization for a CIII subunit; independently supported
by experimental IDA (PMID:28844695, ComplexPortal) and by UniProt subcellular
location.
supported_by:
- reference_id: file:human/UQCRH/UQCRH-uniprot.txt
supporting_text: >-
Mitochondrion inner membrane
- term:
id: GO:0006122
label: mitochondrial electron transport, ubiquinol to cytochrome c
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: >-
InterPro2GO mapping (IPR003422, Cyt_b-c1_6 / hinge domain) to the CIII electron
transport process. Duplicates the IBA core BP term via an orthogonal, domain-based
line of evidence.
action: ACCEPT
reason: >-
The hinge-domain signature correctly implies participation in ubiquinol-to-cytochrome-c
electron transport; consistent with the IBA annotation. Duplicate of the core BP
is acceptable.
supported_by:
- reference_id: PMID:2826252
supporting_text: >-
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase
in
- term:
id: GO:0016020
label: membrane
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: >-
Generic ARBA electronic annotation to "membrane". This is a high-level parent
of the specific and experimentally supported mitochondrial inner membrane term.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Not wrong, but uninformatively general: the specific location (GO:0005743
mitochondrial inner membrane) is well established, so the bare "membrane" term
adds no information and should not be treated as a core localization.
supported_by:
- reference_id: file:human/UQCRH/UQCRH-uniprot.txt
supporting_text: >-
Mitochondrion inner membrane
- term:
id: GO:0098803
label: respiratory chain complex
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: part_of
review:
summary: >-
ARBA electronic annotation placing UQCRH in a (generic) respiratory chain
complex. Correct but is the parent of the specific term respiratory chain
complex III (GO:0045275).
action: KEEP_AS_NON_CORE
reason: >-
Accurate but less specific than GO:0045275, which captures the exact complex.
Retain as a valid but non-core (redundant-parent) annotation.
supported_by:
- reference_id: file:human/UQCRH/UQCRH-uniprot.txt
supporting_text: >-
6 low-molecular
weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
- term:
id: GO:1902600
label: proton transmembrane transport
evidence_type: IEA
original_reference_id: GO_REF:0000108
qualifier: involved_in
review:
summary: >-
Logically-inferred BP from the quinol-cytochrome-c reductase activity term:
Complex III couples electron transfer to translocation of protons across the
inner membrane in the Q cycle.
action: KEEP_AS_NON_CORE
reason: >-
The proton translocation is a genuine, complex-level consequence of the CIII
reaction, but UQCRH is a non-catalytic hinge subunit that does not itself
conduct protons; this is a context/complex-level role rather than the subunit's
core function. Keep as non-core.
supported_by:
- reference_id: PMID:34750991
supporting_text: >-
CIII transports electrons from ubiquinol to cytochrome c and translocates
protons across the inner mitochondrial membrane
- reference_id: Reactome:R-HSA-164651
supporting_text: >-
complex III transfers electrons from ubiquinol to cytochrome c, linking this
process to translocation of protons across the membrane
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
qualifier: enables
review:
summary: >-
Bare "protein binding" from a proteome-scale binary interactome (Y2H) screen.
The reported partners (e.g. ARL8A, RNF24, ENTREP3) are not Complex III subunits.
action: MARK_AS_OVER_ANNOTATED
reason: >-
"Protein binding" is uninformative and does not describe a molecular function;
the high-throughput binary interactors are cytosolic/endosomal proteins with no
obvious physiological relationship to a mitochondrial inner-membrane CIII subunit,
so this is likely a non-specific/spurious interaction. Retained (not removed, per
policy for experimental IPIs) but flagged as over-annotation.
supported_by:
- reference_id: PMID:25416956
supporting_text: A proteome-scale map of the human interactome network.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
qualifier: enables
review:
summary: >-
Bare "protein binding" from a reference binary-interactome (HuRI, Y2H) map.
Partners (e.g. NDFIP1, NDFIP2, PRRG1) are not Complex III components.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Same rationale as the other protein-binding IPI: uninformative MF term and
non-CIII high-throughput binary partners with no established physiological role
for this inner-membrane subunit. Retained but flagged as over-annotation.
supported_by:
- reference_id: PMID:32296183
supporting_text: A reference map of the human binary protein interactome.
- term:
id: GO:0005743
label: mitochondrial inner membrane
evidence_type: IDA
original_reference_id: PMID:28844695
qualifier: located_in
review:
summary: >-
Direct assay (ComplexPortal, from cryo-EM of the human respiratory megacomplex)
localizing UQCRH to the mitochondrial inner membrane as part of Complex III.
action: ACCEPT
reason: >-
Experimental (IDA) localization to the correct, specific compartment; the cryo-EM
structure resolves UQCRH within the membrane-embedded CIII dimer. Core localization.
supported_by:
- reference_id: PMID:28844695
supporting_text: >-
are positioned to accept electrons on the surface of the c1 state CIII dimer
- term:
id: GO:0006122
label: mitochondrial electron transport, ubiquinol to cytochrome c
evidence_type: NAS
original_reference_id: PMID:28844695
qualifier: involved_in
review:
summary: >-
ComplexPortal (NAS) involvement of UQCRH in the ubiquinol-to-cytochrome-c
electron transport reaction of Complex III.
action: ACCEPT
reason: >-
Correct core BP for a CIII subunit; the megacomplex structure shows cytochrome c
docking on the c1-state CIII dimer, the reaction in which UQCRH's hinge role
operates. Duplicate of the core BP term.
supported_by:
- reference_id: PMID:28844695
supporting_text: >-
are positioned to accept electrons on the surface of the c1 state CIII dimer
- term:
id: GO:0045275
label: respiratory chain complex III
evidence_type: IPI
original_reference_id: PMID:28844695
qualifier: part_of
review:
summary: >-
ComplexPortal (IPI) assignment of UQCRH as a part of respiratory chain Complex III,
based on the cryo-EM megacomplex structure.
action: ACCEPT
reason: >-
Experimentally supported membership of the correct, specific complex; consistent
with the IBA annotation and with UniProt's 11-subunit CIII composition. Core CC.
supported_by:
- reference_id: file:human/UQCRH/UQCRH-uniprot.txt
supporting_text: >-
6 low-molecular
weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
- term:
id: GO:0045333
label: cellular respiration
evidence_type: NAS
original_reference_id: PMID:28844695
qualifier: involved_in
review:
summary: >-
ComplexPortal (NAS) involvement in cellular respiration, reflecting Complex III's
role in the respiratory electron transport chain.
action: KEEP_AS_NON_CORE
reason: >-
Correct high-level BP context, but broader than the specific core term GO:0006122;
keep as valid non-core.
supported_by:
- reference_id: PMID:34750991
supporting_text: >-
CIII transports electrons from ubiquinol to cytochrome c and translocates
protons across the inner mitochondrial membrane
- term:
id: GO:0005739
label: mitochondrion
evidence_type: HTP
original_reference_id: PMID:34800366
qualifier: located_in
review:
summary: >-
High-throughput mitochondrial proteome localization to the mitochondrion.
Correct but a generic parent of the specific inner-membrane localization.
action: KEEP_AS_NON_CORE
reason: >-
Accurate compartment but less specific than GO:0005743 (mitochondrial inner
membrane), which is experimentally established; keep as valid non-core.
supported_by:
- reference_id: file:human/UQCRH/UQCRH-uniprot.txt
supporting_text: >-
Mitochondrion inner membrane
- term:
id: GO:0005743
label: mitochondrial inner membrane
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: >-
Sequence-similarity transfer (from ortholog UniProtKB:P00127) of the mitochondrial
inner membrane localization.
action: ACCEPT
reason: >-
Correct, specific localization; consistent with experimental IDA and UniProt.
Duplicate of the core CC term via orthology.
supported_by:
- reference_id: file:human/UQCRH/UQCRH-uniprot.txt
supporting_text: >-
Mitochondrion inner membrane
- term:
id: GO:0008121
label: quinol-cytochrome-c reductase activity
evidence_type: IMP
original_reference_id: PMID:34750991
qualifier: enables
review:
summary: >-
IMP based on the homozygous two-exon UQCRH deletion, which reduces Complex III
(quinol-cytochrome-c reductase) activity to ~50-60% of control. This is the
whole-complex catalytic activity; UQCRH is a non-catalytic structural/hinge
subunit, so the loss of activity reflects a structural/assembly requirement,
not catalysis by UQCRH itself.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The catalytic centres of CIII are carried by cytochrome b (MT-CYB), cytochrome c1
(CYC1) and the Rieske protein (UQCRFS1); UQCRH is explicitly a structural subunit
whose precise function "remains to be fully elucidated" and which "hinges"
cytochrome c to c1. The IMP phenotype (loss of UQCRH lowers CIII activity) is
fully explained by a structural/assembly role, and does not demonstrate that UQCRH
itself enables quinol-cytochrome-c reductase catalysis. Assigning the complex's
catalytic MF to this non-catalytic subunit is an over-annotation; the subunit's
MF is better captured as structural molecule activity (GO:0005198) contributing to
the complex activity. Retained (experimental) but flagged.
supported_by:
- reference_id: PMID:34750991
supporting_text: >-
confirmed a specific decrease of CIII activity to approximately 60% compared
to control cell lines
- reference_id: PMID:34750991
supporting_text: >-
remains to be fully elucidated
- reference_id: PMID:2826252
supporting_text: >-
and 'hinges' cytochrome c with cytochrome c1
- term:
id: GO:0005739
label: mitochondrion
evidence_type: HDA
original_reference_id: PMID:20833797
qualifier: located_in
review:
summary: >-
High-throughput direct assay (mitochondrial phosphoproteome of human muscle)
localizing UQCRH to the mitochondrion.
action: KEEP_AS_NON_CORE
reason: >-
Correct but generic parent of the specific inner-membrane localization; keep as
valid non-core.
supported_by:
- reference_id: file:human/UQCRH/UQCRH-uniprot.txt
supporting_text: >-
Mitochondrion inner membrane
- term:
id: GO:0005743
label: mitochondrial inner membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-164651
qualifier: located_in
review:
summary: >-
Reactome (TAS) localization to the mitochondrial inner membrane, from the pathway
describing electron transfer from ubiquinol to cytochrome c by Complex III.
action: ACCEPT
reason: >-
Correct, specific localization consistent with experimental and UniProt evidence.
Duplicate of the core CC term.
supported_by:
- reference_id: Reactome:R-HSA-164651
supporting_text: >-
complex III transfers electrons from ubiquinol to cytochrome c, linking this
process to translocation of protons across the membrane
- term:
id: GO:0005743
label: mitochondrial inner membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9906017
qualifier: located_in
review:
summary: >-
Reactome (TAS) inner-membrane localization from the CIII assembly pathway
(UQCRFS1 processing). Correct localization for the assembled complex context.
action: ACCEPT
reason: >-
Correct, specific localization; consistent with all other lines of evidence.
Duplicate of the core CC term.
supported_by:
- reference_id: file:human/UQCRH/UQCRH-uniprot.txt
supporting_text: >-
Mitochondrion inner membrane
- term:
id: GO:0005743
label: mitochondrial inner membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9906042
qualifier: located_in
review:
summary: >-
Reactome (TAS) inner-membrane localization from the CIII assembly pathway
(TTC19 clearance of UQCRFS1 fragments). Correct localization for the complex context.
action: ACCEPT
reason: >-
Correct, specific localization; consistent with all other evidence. Duplicate of
the core CC term.
supported_by:
- reference_id: file:human/UQCRH/UQCRH-uniprot.txt
supporting_text: >-
Mitochondrion inner membrane
- term:
id: GO:0006119
label: oxidative phosphorylation
evidence_type: TAS
original_reference_id: PMID:2826252
qualifier: involved_in
review:
summary: >-
TAS involvement in oxidative phosphorylation, reflecting Complex III's place in
the OXPHOS electron transport chain that drives ATP synthesis.
action: KEEP_AS_NON_CORE
reason: >-
Correct high-level BP context but broader than the specific core term GO:0006122;
keep as valid non-core.
supported_by:
- reference_id: PMID:34750991
supporting_text: >-
CIII transports electrons from ubiquinol to cytochrome c and translocates
protons across the inner mitochondrial membrane
- term:
id: GO:0008121
label: quinol-cytochrome-c reductase activity
evidence_type: TAS
original_reference_id: PMID:2826252
qualifier: enables
review:
summary: >-
TAS (PINC) assignment of quinol-cytochrome-c reductase activity, i.e. the whole
Complex III catalytic activity, to UQCRH. UQCRH is the non-catalytic hinge subunit.
action: MARK_AS_OVER_ANNOTATED
reason: >-
As with the IMP annotation to the same term, this attributes the complex's
catalytic MF to a structural, non-catalytic subunit. The 1987 paper itself
describes UQCRH only as a subunit that "hinges" cytochrome c to c1, not as the
catalytic entity. Better represented as structural molecule activity contributing
to the complex activity; flagged as over-annotation.
supported_by:
- reference_id: PMID:2826252
supporting_text: >-
and 'hinges' cytochrome c with cytochrome c1
- term:
id: GO:0009060
label: aerobic respiration
evidence_type: TAS
original_reference_id: PMID:2826252
qualifier: involved_in
review:
summary: >-
TAS involvement in aerobic respiration, reflecting the role of the ubiquinol-cytochrome-c
reductase in the aerobic respiratory chain.
action: KEEP_AS_NON_CORE
reason: >-
Correct high-level BP context but broader than the specific core term GO:0006122;
keep as valid non-core.
supported_by:
- reference_id: PMID:2826252
supporting_text: >-
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase
in
- term:
id: GO:0098803
label: respiratory chain complex
evidence_type: TAS
original_reference_id: PMID:2826252
qualifier: located_in
review:
summary: >-
TAS assignment of UQCRH to a respiratory chain complex. Correct but generic parent
of the specific respiratory chain complex III term.
action: KEEP_AS_NON_CORE
reason: >-
Accurate but less specific than GO:0045275 (respiratory chain complex III); keep
as valid non-core.
supported_by:
- reference_id: PMID:2826252
supporting_text: >-
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase
in
core_functions:
- description: >-
Non-catalytic structural (hinge) subunit of mitochondrial respiratory Complex III
(cytochrome bc1); provides the acidic docking interface that positions cytochrome c
against cytochrome c1, contributing to the quinol-cytochrome-c reductase activity of
the assembled complex and stabilizing the holoenzyme.
molecular_function:
id: GO:0005198
label: structural molecule activity
directly_involved_in:
- id: GO:0006122
label: mitochondrial electron transport, ubiquinol to cytochrome c
locations:
- id: GO:0005743
label: mitochondrial inner membrane
in_complex:
id: GO:0045275
label: respiratory chain complex III
contributes_to_molecular_function:
id: GO:0008121
label: quinol-cytochrome-c reductase activity
supported_by:
- reference_id: PMID:2826252
supporting_text: >-
and 'hinges' cytochrome c with cytochrome c1
- reference_id: PMID:34750991
supporting_text: >-
encodes a structural complex III (CIII) subunit
proposed_new_terms: []
suggested_questions:
- question: >-
Does UQCRH have any role beyond CIII assembly/structure and cytochrome c docking
(e.g. a regulatory or supercomplex-organizing role), given the altered supercomplex
distribution observed upon its loss?
suggested_experiments:
- description: >-
Structure-guided mutagenesis of the acidic N-terminal region and the cytochrome c
docking surface of UQCRH to quantify effects on cytochrome c1-cytochrome c electron
transfer versus overall CIII assembly and stability.
hypothesis: >-
The acidic hinge region of UQCRH is specifically required for cytochrome c docking
and c1-to-c electron transfer, separable from its contribution to CIII holoenzyme
assembly/stability.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000108
title: Automatic assignment of GO terms using logical inference, based on on inter-ontology
links
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: PMID:20833797
title: Phosphoproteome analysis of functional mitochondria isolated from resting
human muscle reveals extensive phosphorylation of inner membrane protein complexes
and enzymes.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: >-
High-throughput mitochondrial phosphoproteome; supports mitochondrion localization
only (HDA).
- id: PMID:25416956
title: A proteome-scale map of the human interactome network.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: >-
Proteome-scale binary interactome; source of a bare protein-binding IPI with
non-CIII partners; not informative for UQCRH's core function.
- id: PMID:2826252
title: An extremely acidic amino-terminal presequence of the precursor for the human
mitochondrial hinge protein.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Original cloning of the human hinge protein; establishes it as a CIII subunit that
"hinges" cytochrome c to cytochrome c1 and has an unusually acidic import presequence.
- id: PMID:28844695
title: Architecture of Human Mitochondrial Respiratory Megacomplex I(2)III(2)IV(2).
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Cryo-EM of the human respiratory megacomplex; resolves UQCRH within the CIII dimer
in the inner membrane; basis for ComplexPortal IDA/IPI/NAS annotations.
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: >-
HuRI reference binary interactome; source of a bare protein-binding IPI with
non-CIII partners; not informative for UQCRH's core function.
- id: PMID:34750991
title: 'Characterising a homozygous two-exon deletion in UQCRH: comparing human
and mouse phenotypes.'
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
First disease report and functional (IMP) study; homozygous UQCRH deletion causes
CIII deficiency (~50-60% residual activity) in patients and a matching mouse model;
explicitly describes UQCRH as a structural CIII subunit that links cytochromes c and c1.
- id: PMID:34800366
title: Quantitative high-confidence human mitochondrial proteome and its dynamics
in cellular context.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: >-
High-confidence mitochondrial proteome; supports mitochondrion localization (HTP).
- id: Reactome:R-HSA-164651
title: Electron transfer from ubiquinol to cytochrome c of complex III
findings: []
- id: Reactome:R-HSA-9906017
title: Unknown peptidase cleaves UQCRFS1 subunit
findings: []
- id: Reactome:R-HSA-9906042
title: TTC19 clears UQCRFS1 fragments from Complex III
findings: []
- id: file:human/UQCRH/UQCRH-uniprot.txt
title: UniProtKB P07919 (QCR6_HUMAN) Cytochrome b-c1 complex subunit 6, mitochondrial
findings: []