UQCRH

UniProt ID: P07919
Organism: Homo sapiens
Review Status: INITIALIZED
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Gene Description

UQCRH (ubiquinol-cytochrome c reductase hinge protein; cytochrome b-c1 complex subunit 6, also called Complex III subunit 6/VIII or the "hinge" protein) is a small (91-residue precursor; 14-91 mature) nuclear-encoded structural subunit of the mitochondrial respiratory chain Complex III (cytochrome bc1 / ubiquinol-cytochrome c oxidoreductase). It is imported into mitochondria via an unusually acidic N-terminal transit peptide and resides as a peripheral membrane protein on the intermembrane-space side of the mitochondrial inner membrane. UQCRH is one of the low-molecular-weight, non-catalytic subunits of the obligate CIII dimer; the catalytic redox centres are carried by cytochrome b (MT-CYB), cytochrome c1 (CYC1) and the Rieske iron-sulfur protein (UQCRFS1). The acidic hinge protein forms the docking interface that "hinges" cytochrome c to cytochrome c1, and is required for correct interaction and electron transfer between cytochrome c1 and soluble cytochrome c. Loss of UQCRH destabilizes the assembled holoenzyme, reduces Complex III catalytic activity, and causes mitochondrial complex III deficiency (nuclear type 11), presenting with lactic acidosis, hyperammonaemia, hypoglycaemia and encephalopathy. Its overall role is therefore structural/assembly and electron-transfer facilitation within Complex III during aerobic respiration and oxidative phosphorylation.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0045275 respiratory chain complex III
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetically-inferred assignment of UQCRH as a component of respiratory chain Complex III (cytochrome bc1). This is the correct, specific complex for this subunit and is strongly supported by structural, biochemical and disease evidence.
Reason: UQCRH is a bona fide low-molecular-weight subunit of the 11-subunit cytochrome b-c1 complex (CIII); this is confirmed experimentally by cryo-EM structure and by the CIII deficiency caused by its loss. GO:0045275 is the current, correct term (the legacy GO:0005750 is obsolete).
Supporting Evidence:
PMID:34750991
encodes a structural complex III (CIII) subunit
file:human/UQCRH/UQCRH-uniprot.txt
6 low-molecular weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetically-inferred involvement in the Complex III reaction that transfers electrons from ubiquinol to cytochrome c. This is the core biological process of Complex III and the most specific correct BP term for this subunit.
Reason: As a subunit of CIII, UQCRH participates in the ubiquinol-to-cytochrome-c electron transport reaction; the hinge protein specifically mediates the cytochrome c1-cytochrome c docking/electron-transfer step. This is the representative core BP.
Supporting Evidence:
PMID:34750991
CIII transports electrons from ubiquinol to cytochrome c and translocates protons across the inner mitochondrial membrane
PMID:2826252
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase in
GO:0005743 mitochondrial inner membrane
IEA
GO_REF:0000044
ACCEPT
Summary: Subcellular-location mapping to the mitochondrial inner membrane, consistent with UniProt annotation of UQCRH as a peripheral inner-membrane protein on the intermembrane side.
Reason: Correct and specific localization for a CIII subunit; independently supported by experimental IDA (PMID:28844695, ComplexPortal) and by UniProt subcellular location.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
IEA
GO_REF:0000002
ACCEPT
Summary: InterPro2GO mapping (IPR003422, Cyt_b-c1_6 / hinge domain) to the CIII electron transport process. Duplicates the IBA core BP term via an orthogonal, domain-based line of evidence.
Reason: The hinge-domain signature correctly implies participation in ubiquinol-to-cytochrome-c electron transport; consistent with the IBA annotation. Duplicate of the core BP is acceptable.
Supporting Evidence:
PMID:2826252
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase in
GO:0016020 membrane
IEA
GO_REF:0000117
MARK AS OVER ANNOTATED
Summary: Generic ARBA electronic annotation to "membrane". This is a high-level parent of the specific and experimentally supported mitochondrial inner membrane term.
Reason: Not wrong, but uninformatively general: the specific location (GO:0005743 mitochondrial inner membrane) is well established, so the bare "membrane" term adds no information and should not be treated as a core localization.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
GO:0098803 respiratory chain complex
IEA
GO_REF:0000117
KEEP AS NON CORE
Summary: ARBA electronic annotation placing UQCRH in a (generic) respiratory chain complex. Correct but is the parent of the specific term respiratory chain complex III (GO:0045275).
Reason: Accurate but less specific than GO:0045275, which captures the exact complex. Retain as a valid but non-core (redundant-parent) annotation.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
6 low-molecular weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
GO:1902600 proton transmembrane transport
IEA
GO_REF:0000108
KEEP AS NON CORE
Summary: Logically-inferred BP from the quinol-cytochrome-c reductase activity term: Complex III couples electron transfer to translocation of protons across the inner membrane in the Q cycle.
Reason: The proton translocation is a genuine, complex-level consequence of the CIII reaction, but UQCRH is a non-catalytic hinge subunit that does not itself conduct protons; this is a context/complex-level role rather than the subunit's core function. Keep as non-core.
Supporting Evidence:
PMID:34750991
CIII transports electrons from ubiquinol to cytochrome c and translocates protons across the inner mitochondrial membrane
Reactome:R-HSA-164651
complex III transfers electrons from ubiquinol to cytochrome c, linking this process to translocation of protons across the membrane
GO:0005515 protein binding
IPI
PMID:25416956
A proteome-scale map of the human interactome network.
MARK AS OVER ANNOTATED
Summary: Bare "protein binding" from a proteome-scale binary interactome (Y2H) screen. The reported partners (e.g. ARL8A, RNF24, ENTREP3) are not Complex III subunits.
Reason: "Protein binding" is uninformative and does not describe a molecular function; the high-throughput binary interactors are cytosolic/endosomal proteins with no obvious physiological relationship to a mitochondrial inner-membrane CIII subunit, so this is likely a non-specific/spurious interaction. Retained (not removed, per policy for experimental IPIs) but flagged as over-annotation.
Supporting Evidence:
PMID:25416956
A proteome-scale map of the human interactome network.
GO:0005515 protein binding
IPI
PMID:32296183
A reference map of the human binary protein interactome.
MARK AS OVER ANNOTATED
Summary: Bare "protein binding" from a reference binary-interactome (HuRI, Y2H) map. Partners (e.g. NDFIP1, NDFIP2, PRRG1) are not Complex III components.
Reason: Same rationale as the other protein-binding IPI: uninformative MF term and non-CIII high-throughput binary partners with no established physiological role for this inner-membrane subunit. Retained but flagged as over-annotation.
Supporting Evidence:
PMID:32296183
A reference map of the human binary protein interactome.
GO:0005743 mitochondrial inner membrane
IDA
PMID:28844695
Architecture of Human Mitochondrial Respiratory Megacomplex ...
ACCEPT
Summary: Direct assay (ComplexPortal, from cryo-EM of the human respiratory megacomplex) localizing UQCRH to the mitochondrial inner membrane as part of Complex III.
Reason: Experimental (IDA) localization to the correct, specific compartment; the cryo-EM structure resolves UQCRH within the membrane-embedded CIII dimer. Core localization.
Supporting Evidence:
PMID:28844695
are positioned to accept electrons on the surface of the c1 state CIII dimer
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
NAS
PMID:28844695
Architecture of Human Mitochondrial Respiratory Megacomplex ...
ACCEPT
Summary: ComplexPortal (NAS) involvement of UQCRH in the ubiquinol-to-cytochrome-c electron transport reaction of Complex III.
Reason: Correct core BP for a CIII subunit; the megacomplex structure shows cytochrome c docking on the c1-state CIII dimer, the reaction in which UQCRH's hinge role operates. Duplicate of the core BP term.
Supporting Evidence:
PMID:28844695
are positioned to accept electrons on the surface of the c1 state CIII dimer
GO:0045275 respiratory chain complex III
IPI
PMID:28844695
Architecture of Human Mitochondrial Respiratory Megacomplex ...
ACCEPT
Summary: ComplexPortal (IPI) assignment of UQCRH as a part of respiratory chain Complex III, based on the cryo-EM megacomplex structure.
Reason: Experimentally supported membership of the correct, specific complex; consistent with the IBA annotation and with UniProt's 11-subunit CIII composition. Core CC.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
6 low-molecular weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
GO:0045333 cellular respiration
NAS
PMID:28844695
Architecture of Human Mitochondrial Respiratory Megacomplex ...
KEEP AS NON CORE
Summary: ComplexPortal (NAS) involvement in cellular respiration, reflecting Complex III's role in the respiratory electron transport chain.
Reason: Correct high-level BP context, but broader than the specific core term GO:0006122; keep as valid non-core.
Supporting Evidence:
PMID:34750991
CIII transports electrons from ubiquinol to cytochrome c and translocates protons across the inner mitochondrial membrane
GO:0005739 mitochondrion
HTP
PMID:34800366
Quantitative high-confidence human mitochondrial proteome an...
KEEP AS NON CORE
Summary: High-throughput mitochondrial proteome localization to the mitochondrion. Correct but a generic parent of the specific inner-membrane localization.
Reason: Accurate compartment but less specific than GO:0005743 (mitochondrial inner membrane), which is experimentally established; keep as valid non-core.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
GO:0005743 mitochondrial inner membrane
ISS
GO_REF:0000024
ACCEPT
Summary: Sequence-similarity transfer (from ortholog UniProtKB:P00127) of the mitochondrial inner membrane localization.
Reason: Correct, specific localization; consistent with experimental IDA and UniProt. Duplicate of the core CC term via orthology.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
GO:0008121 quinol-cytochrome-c reductase activity
IMP
PMID:34750991
Characterising a homozygous two-exon deletion in UQCRH: comp...
MARK AS OVER ANNOTATED
Summary: IMP based on the homozygous two-exon UQCRH deletion, which reduces Complex III (quinol-cytochrome-c reductase) activity to ~50-60% of control. This is the whole-complex catalytic activity; UQCRH is a non-catalytic structural/hinge subunit, so the loss of activity reflects a structural/assembly requirement, not catalysis by UQCRH itself.
Reason: The catalytic centres of CIII are carried by cytochrome b (MT-CYB), cytochrome c1 (CYC1) and the Rieske protein (UQCRFS1); UQCRH is explicitly a structural subunit whose precise function "remains to be fully elucidated" and which "hinges" cytochrome c to c1. The IMP phenotype (loss of UQCRH lowers CIII activity) is fully explained by a structural/assembly role, and does not demonstrate that UQCRH itself enables quinol-cytochrome-c reductase catalysis. Assigning the complex's catalytic MF to this non-catalytic subunit is an over-annotation; the subunit's MF is better captured as structural molecule activity (GO:0005198) contributing to the complex activity. Retained (experimental) but flagged.
Supporting Evidence:
PMID:34750991
confirmed a specific decrease of CIII activity to approximately 60% compared to control cell lines
PMID:34750991
remains to be fully elucidated
PMID:2826252
and 'hinges' cytochrome c with cytochrome c1
GO:0005739 mitochondrion
HDA
PMID:20833797
Phosphoproteome analysis of functional mitochondria isolated...
KEEP AS NON CORE
Summary: High-throughput direct assay (mitochondrial phosphoproteome of human muscle) localizing UQCRH to the mitochondrion.
Reason: Correct but generic parent of the specific inner-membrane localization; keep as valid non-core.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
GO:0005743 mitochondrial inner membrane
TAS
Reactome:R-HSA-164651
ACCEPT
Summary: Reactome (TAS) localization to the mitochondrial inner membrane, from the pathway describing electron transfer from ubiquinol to cytochrome c by Complex III.
Reason: Correct, specific localization consistent with experimental and UniProt evidence. Duplicate of the core CC term.
Supporting Evidence:
Reactome:R-HSA-164651
complex III transfers electrons from ubiquinol to cytochrome c, linking this process to translocation of protons across the membrane
GO:0005743 mitochondrial inner membrane
TAS
Reactome:R-HSA-9906017
ACCEPT
Summary: Reactome (TAS) inner-membrane localization from the CIII assembly pathway (UQCRFS1 processing). Correct localization for the assembled complex context.
Reason: Correct, specific localization; consistent with all other lines of evidence. Duplicate of the core CC term.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
GO:0005743 mitochondrial inner membrane
TAS
Reactome:R-HSA-9906042
ACCEPT
Summary: Reactome (TAS) inner-membrane localization from the CIII assembly pathway (TTC19 clearance of UQCRFS1 fragments). Correct localization for the complex context.
Reason: Correct, specific localization; consistent with all other evidence. Duplicate of the core CC term.
Supporting Evidence:
file:human/UQCRH/UQCRH-uniprot.txt
Mitochondrion inner membrane
GO:0006119 oxidative phosphorylation
TAS
PMID:2826252
An extremely acidic amino-terminal presequence of the precur...
KEEP AS NON CORE
Summary: TAS involvement in oxidative phosphorylation, reflecting Complex III's place in the OXPHOS electron transport chain that drives ATP synthesis.
Reason: Correct high-level BP context but broader than the specific core term GO:0006122; keep as valid non-core.
Supporting Evidence:
PMID:34750991
CIII transports electrons from ubiquinol to cytochrome c and translocates protons across the inner mitochondrial membrane
GO:0008121 quinol-cytochrome-c reductase activity
TAS
PMID:2826252
An extremely acidic amino-terminal presequence of the precur...
MARK AS OVER ANNOTATED
Summary: TAS (PINC) assignment of quinol-cytochrome-c reductase activity, i.e. the whole Complex III catalytic activity, to UQCRH. UQCRH is the non-catalytic hinge subunit.
Reason: As with the IMP annotation to the same term, this attributes the complex's catalytic MF to a structural, non-catalytic subunit. The 1987 paper itself describes UQCRH only as a subunit that "hinges" cytochrome c to c1, not as the catalytic entity. Better represented as structural molecule activity contributing to the complex activity; flagged as over-annotation.
Supporting Evidence:
PMID:2826252
and 'hinges' cytochrome c with cytochrome c1
GO:0009060 aerobic respiration
TAS
PMID:2826252
An extremely acidic amino-terminal presequence of the precur...
KEEP AS NON CORE
Summary: TAS involvement in aerobic respiration, reflecting the role of the ubiquinol-cytochrome-c reductase in the aerobic respiratory chain.
Reason: Correct high-level BP context but broader than the specific core term GO:0006122; keep as valid non-core.
Supporting Evidence:
PMID:2826252
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase in
GO:0098803 respiratory chain complex
TAS
PMID:2826252
An extremely acidic amino-terminal presequence of the precur...
KEEP AS NON CORE
Summary: TAS assignment of UQCRH to a respiratory chain complex. Correct but generic parent of the specific respiratory chain complex III term.
Reason: Accurate but less specific than GO:0045275 (respiratory chain complex III); keep as valid non-core.
Supporting Evidence:
PMID:2826252
Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase in

Core Functions

Non-catalytic structural (hinge) subunit of mitochondrial respiratory Complex III (cytochrome bc1); provides the acidic docking interface that positions cytochrome c against cytochrome c1, contributing to the quinol-cytochrome-c reductase activity of the assembled complex and stabilizing the holoenzyme.

Supporting Evidence:

References

Gene Ontology annotation through association of InterPro records with GO terms
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Automatic assignment of GO terms using logical inference, based on on inter-ontology links
Electronic Gene Ontology annotations created by ARBA machine learning models
Phosphoproteome analysis of functional mitochondria isolated from resting human muscle reveals extensive phosphorylation of inner membrane protein complexes and enzymes.
A proteome-scale map of the human interactome network.
An extremely acidic amino-terminal presequence of the precursor for the human mitochondrial hinge protein.
Architecture of Human Mitochondrial Respiratory Megacomplex I(2)III(2)IV(2).
A reference map of the human binary protein interactome.
Characterising a homozygous two-exon deletion in UQCRH: comparing human and mouse phenotypes.
Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context.
Reactome:R-HSA-164651
Electron transfer from ubiquinol to cytochrome c of complex III
Reactome:R-HSA-9906017
Unknown peptidase cleaves UQCRFS1 subunit
Reactome:R-HSA-9906042
TTC19 clears UQCRFS1 fragments from Complex III
file:human/UQCRH/UQCRH-uniprot.txt
UniProtKB P07919 (QCR6_HUMAN) Cytochrome b-c1 complex subunit 6, mitochondrial

Suggested Questions for Experts

Q: Does UQCRH have any role beyond CIII assembly/structure and cytochrome c docking (e.g. a regulatory or supercomplex-organizing role), given the altered supercomplex distribution observed upon its loss?

Suggested Experiments

Experiment: Structure-guided mutagenesis of the acidic N-terminal region and the cytochrome c docking surface of UQCRH to quantify effects on cytochrome c1-cytochrome c electron transfer versus overall CIII assembly and stability.

Hypothesis: The acidic hinge region of UQCRH is specifically required for cytochrome c docking and c1-to-c electron transfer, separable from its contribution to CIII holoenzyme assembly/stability.

📚 Additional Documentation

Notes

(UQCRH-notes.md)

UQCRH (P07919) review notes

Identity

  • Cytochrome b-c1 complex subunit 6, mitochondrial (Complex III subunit 6 / subunit VIII).
  • AltNames: Mitochondrial hinge protein; Cytochrome c1 non-heme 11 kDa protein; Ubiquinol-cytochrome c reductase complex 11 kDa protein.
  • 91 aa precursor; TRANSIT 1-13 (mitochondrial); mature chain 14-91. Belongs to UQCRH/QCR6 family.
  • Small, non-catalytic structural subunit of mitochondrial respiratory Complex III (cytochrome bc1).

Core biology (verified)

  • Hinge protein: "Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase in the respiratory chain and 'hinges' cytochrome c with cytochrome c1" [PMID:2826252 abstract].
  • Structural component linking cytochromes c and c1: "Functional CIII is organised as a dimeric complex (CIII2) and UQCRH is thought to be a structural component linking the cytochromes c and c1 (Ohta et al, 1987)" PMID:34750991.
  • Deletion → impaired CIII activity (~50-60% residual), reduced holoenzyme MW, altered supercomplex distribution → CIII deficiency disease (MC3DN11) [PMID:34750991 IMP].
  • One of the eight CIII subunits whose exact molecular role "remains to be fully elucidated" — i.e. non-catalytic; catalytic centres are MT-CYB, CYC1, UQCRFS1 PMID:34750991.
  • Location: mitochondrial inner membrane; peripheral membrane protein, intermembrane side [UniProt SUBCELLULAR LOCATION].

GOA aspect/label anchors (use these exact current terms)

  • CC: GO:0045275 respiratory chain complex III (NOT obsolete GO:0005750); GO:0005743 mitochondrial inner membrane; GO:0005739 mitochondrion; GO:0016020 membrane; GO:0098803 respiratory chain complex.
  • BP: GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c; GO:0045333 cellular respiration; GO:0006119 oxidative phosphorylation; GO:0009060 aerobic respiration; GO:1902600 proton transmembrane transport.
  • MF: GO:0008121 quinol-cytochrome-c reductase activity (the whole-complex activity; UQCRH is non-catalytic so this is contributes_to, not enables); GO:0005515 protein binding.

Curation decisions

  • Structural subunit, non-catalytic. MF for core_functions = GO:0005198 structural molecule activity, plus contributes_to GO:0008121 (the complex catalytic activity). Do NOT invent a catalytic MF for the subunit itself.
  • The two enables GO:0008121 annotations (IMP PMID:34750991; TAS PMID:2826252) attribute the WHOLE-COMPLEX activity to the subunit. UQCRH is non-catalytic, so enables is an over-annotation of the subunit's function. IMP shows deletion reduces CIII activity (consistent with structural/assembly role) but does not show UQCRH itself is the catalytic entity → MODIFY toward structural molecule activity / MARK_AS_OVER_ANNOTATED. IMP not verifiable-as-catalytic; keep as over-annotated (do not REMOVE experimental).
  • Bare protein binding IPIs (PMID:25416956, PMID:32296183): high-throughput Y2H binary interactions with non-CIII proteins (ARL8A, ENTREP3, NDFIP1/2, PRRG1, RNF24). MARK_AS_OVER_ANNOTATED (uninformative + likely non-physiological for a mito inner-membrane subunit).
  • GO:0016020 membrane (IEA ARBA): too general given inner-membrane evidence → MARK_AS_OVER_ANNOTATED.
  • GO:0098803 respiratory chain complex (IEA + TAS): correct but generic parent of GO:0045275 → KEEP_AS_NON_CORE.
  • GO:0005739 mitochondrion (HTP/HDA): correct but generic parent of GO:0005743 → KEEP_AS_NON_CORE.
  • GO:1902600 proton transmembrane transport (IEA from GO:0008121 inter-ontology link): the complex translocates protons via the Q-cycle; for the non-catalytic hinge subunit this is a complex-level/context role → KEEP_AS_NON_CORE.
  • GO:0006119 oxidative phosphorylation, GO:0009060 aerobic respiration, GO:0045333 cellular respiration: broader BP context; core BP is GO:0006122 → KEEP_AS_NON_CORE.

📄 View Raw YAML

id: P07919
gene_symbol: UQCRH
product_type: PROTEIN
status: INITIALIZED
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: >-
  UQCRH (ubiquinol-cytochrome c reductase hinge protein; cytochrome b-c1 complex
  subunit 6, also called Complex III subunit 6/VIII or the "hinge" protein) is a
  small (91-residue precursor; 14-91 mature) nuclear-encoded structural subunit of
  the mitochondrial respiratory chain Complex III (cytochrome bc1 / ubiquinol-cytochrome
  c oxidoreductase). It is imported into mitochondria via an unusually acidic N-terminal
  transit peptide and resides as a peripheral membrane protein on the intermembrane-space
  side of the mitochondrial inner membrane. UQCRH is one of the low-molecular-weight,
  non-catalytic subunits of the obligate CIII dimer; the catalytic redox centres are
  carried by cytochrome b (MT-CYB), cytochrome c1 (CYC1) and the Rieske iron-sulfur
  protein (UQCRFS1). The acidic hinge protein forms the docking interface that
  "hinges" cytochrome c to cytochrome c1, and is required for correct interaction and
  electron transfer between cytochrome c1 and soluble cytochrome c. Loss of UQCRH
  destabilizes the assembled holoenzyme, reduces Complex III catalytic activity, and
  causes mitochondrial complex III deficiency (nuclear type 11), presenting with lactic
  acidosis, hyperammonaemia, hypoglycaemia and encephalopathy. Its overall role is
  therefore structural/assembly and electron-transfer facilitation within Complex III
  during aerobic respiration and oxidative phosphorylation.
existing_annotations:
- term:
    id: GO:0045275
    label: respiratory chain complex III
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: part_of
  review:
    summary: >-
      Phylogenetically-inferred assignment of UQCRH as a component of respiratory
      chain Complex III (cytochrome bc1). This is the correct, specific complex for
      this subunit and is strongly supported by structural, biochemical and disease
      evidence.
    action: ACCEPT
    reason: >-
      UQCRH is a bona fide low-molecular-weight subunit of the 11-subunit cytochrome
      b-c1 complex (CIII); this is confirmed experimentally by cryo-EM structure and
      by the CIII deficiency caused by its loss. GO:0045275 is the current, correct
      term (the legacy GO:0005750 is obsolete).
    supported_by:
    - reference_id: PMID:34750991
      supporting_text: >-
        encodes a structural complex III (CIII) subunit
    - reference_id: file:human/UQCRH/UQCRH-uniprot.txt
      supporting_text: >-
        6 low-molecular
        weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
- term:
    id: GO:0006122
    label: mitochondrial electron transport, ubiquinol to cytochrome c
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: involved_in
  review:
    summary: >-
      Phylogenetically-inferred involvement in the Complex III reaction that transfers
      electrons from ubiquinol to cytochrome c. This is the core biological process
      of Complex III and the most specific correct BP term for this subunit.
    action: ACCEPT
    reason: >-
      As a subunit of CIII, UQCRH participates in the ubiquinol-to-cytochrome-c
      electron transport reaction; the hinge protein specifically mediates the
      cytochrome c1-cytochrome c docking/electron-transfer step. This is the
      representative core BP.
    supported_by:
    - reference_id: PMID:34750991
      supporting_text: >-
        CIII transports electrons from ubiquinol to cytochrome c and translocates
        protons across the inner mitochondrial membrane
    - reference_id: PMID:2826252
      supporting_text: >-
        Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase
        in
- term:
    id: GO:0005743
    label: mitochondrial inner membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: >-
      Subcellular-location mapping to the mitochondrial inner membrane, consistent
      with UniProt annotation of UQCRH as a peripheral inner-membrane protein on the
      intermembrane side.
    action: ACCEPT
    reason: >-
      Correct and specific localization for a CIII subunit; independently supported
      by experimental IDA (PMID:28844695, ComplexPortal) and by UniProt subcellular
      location.
    supported_by:
    - reference_id: file:human/UQCRH/UQCRH-uniprot.txt
      supporting_text: >-
        Mitochondrion inner membrane
- term:
    id: GO:0006122
    label: mitochondrial electron transport, ubiquinol to cytochrome c
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: involved_in
  review:
    summary: >-
      InterPro2GO mapping (IPR003422, Cyt_b-c1_6 / hinge domain) to the CIII electron
      transport process. Duplicates the IBA core BP term via an orthogonal, domain-based
      line of evidence.
    action: ACCEPT
    reason: >-
      The hinge-domain signature correctly implies participation in ubiquinol-to-cytochrome-c
      electron transport; consistent with the IBA annotation. Duplicate of the core BP
      is acceptable.
    supported_by:
    - reference_id: PMID:2826252
      supporting_text: >-
        Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase
        in
- term:
    id: GO:0016020
    label: membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000117
  qualifier: located_in
  review:
    summary: >-
      Generic ARBA electronic annotation to "membrane". This is a high-level parent
      of the specific and experimentally supported mitochondrial inner membrane term.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Not wrong, but uninformatively general: the specific location (GO:0005743
      mitochondrial inner membrane) is well established, so the bare "membrane" term
      adds no information and should not be treated as a core localization.
    supported_by:
    - reference_id: file:human/UQCRH/UQCRH-uniprot.txt
      supporting_text: >-
        Mitochondrion inner membrane
- term:
    id: GO:0098803
    label: respiratory chain complex
  evidence_type: IEA
  original_reference_id: GO_REF:0000117
  qualifier: part_of
  review:
    summary: >-
      ARBA electronic annotation placing UQCRH in a (generic) respiratory chain
      complex. Correct but is the parent of the specific term respiratory chain
      complex III (GO:0045275).
    action: KEEP_AS_NON_CORE
    reason: >-
      Accurate but less specific than GO:0045275, which captures the exact complex.
      Retain as a valid but non-core (redundant-parent) annotation.
    supported_by:
    - reference_id: file:human/UQCRH/UQCRH-uniprot.txt
      supporting_text: >-
        6 low-molecular
        weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
- term:
    id: GO:1902600
    label: proton transmembrane transport
  evidence_type: IEA
  original_reference_id: GO_REF:0000108
  qualifier: involved_in
  review:
    summary: >-
      Logically-inferred BP from the quinol-cytochrome-c reductase activity term:
      Complex III couples electron transfer to translocation of protons across the
      inner membrane in the Q cycle.
    action: KEEP_AS_NON_CORE
    reason: >-
      The proton translocation is a genuine, complex-level consequence of the CIII
      reaction, but UQCRH is a non-catalytic hinge subunit that does not itself
      conduct protons; this is a context/complex-level role rather than the subunit's
      core function. Keep as non-core.
    supported_by:
    - reference_id: PMID:34750991
      supporting_text: >-
        CIII transports electrons from ubiquinol to cytochrome c and translocates
        protons across the inner mitochondrial membrane
    - reference_id: Reactome:R-HSA-164651
      supporting_text: >-
        complex III transfers electrons from ubiquinol to cytochrome c, linking this
        process to translocation of protons across the membrane
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:25416956
  qualifier: enables
  review:
    summary: >-
      Bare "protein binding" from a proteome-scale binary interactome (Y2H) screen.
      The reported partners (e.g. ARL8A, RNF24, ENTREP3) are not Complex III subunits.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      "Protein binding" is uninformative and does not describe a molecular function;
      the high-throughput binary interactors are cytosolic/endosomal proteins with no
      obvious physiological relationship to a mitochondrial inner-membrane CIII subunit,
      so this is likely a non-specific/spurious interaction. Retained (not removed, per
      policy for experimental IPIs) but flagged as over-annotation.
    supported_by:
    - reference_id: PMID:25416956
      supporting_text: A proteome-scale map of the human interactome network.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:32296183
  qualifier: enables
  review:
    summary: >-
      Bare "protein binding" from a reference binary-interactome (HuRI, Y2H) map.
      Partners (e.g. NDFIP1, NDFIP2, PRRG1) are not Complex III components.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Same rationale as the other protein-binding IPI: uninformative MF term and
      non-CIII high-throughput binary partners with no established physiological role
      for this inner-membrane subunit. Retained but flagged as over-annotation.
    supported_by:
    - reference_id: PMID:32296183
      supporting_text: A reference map of the human binary protein interactome.
- term:
    id: GO:0005743
    label: mitochondrial inner membrane
  evidence_type: IDA
  original_reference_id: PMID:28844695
  qualifier: located_in
  review:
    summary: >-
      Direct assay (ComplexPortal, from cryo-EM of the human respiratory megacomplex)
      localizing UQCRH to the mitochondrial inner membrane as part of Complex III.
    action: ACCEPT
    reason: >-
      Experimental (IDA) localization to the correct, specific compartment; the cryo-EM
      structure resolves UQCRH within the membrane-embedded CIII dimer. Core localization.
    supported_by:
    - reference_id: PMID:28844695
      supporting_text: >-
        are positioned to accept electrons on the surface of the c1 state CIII dimer
- term:
    id: GO:0006122
    label: mitochondrial electron transport, ubiquinol to cytochrome c
  evidence_type: NAS
  original_reference_id: PMID:28844695
  qualifier: involved_in
  review:
    summary: >-
      ComplexPortal (NAS) involvement of UQCRH in the ubiquinol-to-cytochrome-c
      electron transport reaction of Complex III.
    action: ACCEPT
    reason: >-
      Correct core BP for a CIII subunit; the megacomplex structure shows cytochrome c
      docking on the c1-state CIII dimer, the reaction in which UQCRH's hinge role
      operates. Duplicate of the core BP term.
    supported_by:
    - reference_id: PMID:28844695
      supporting_text: >-
        are positioned to accept electrons on the surface of the c1 state CIII dimer
- term:
    id: GO:0045275
    label: respiratory chain complex III
  evidence_type: IPI
  original_reference_id: PMID:28844695
  qualifier: part_of
  review:
    summary: >-
      ComplexPortal (IPI) assignment of UQCRH as a part of respiratory chain Complex III,
      based on the cryo-EM megacomplex structure.
    action: ACCEPT
    reason: >-
      Experimentally supported membership of the correct, specific complex; consistent
      with the IBA annotation and with UniProt's 11-subunit CIII composition. Core CC.
    supported_by:
    - reference_id: file:human/UQCRH/UQCRH-uniprot.txt
      supporting_text: >-
        6 low-molecular
        weight protein subunits UQCRH/QCR6, UQCRB/QCR7, UQCRQ/QCR8,
- term:
    id: GO:0045333
    label: cellular respiration
  evidence_type: NAS
  original_reference_id: PMID:28844695
  qualifier: involved_in
  review:
    summary: >-
      ComplexPortal (NAS) involvement in cellular respiration, reflecting Complex III's
      role in the respiratory electron transport chain.
    action: KEEP_AS_NON_CORE
    reason: >-
      Correct high-level BP context, but broader than the specific core term GO:0006122;
      keep as valid non-core.
    supported_by:
    - reference_id: PMID:34750991
      supporting_text: >-
        CIII transports electrons from ubiquinol to cytochrome c and translocates
        protons across the inner mitochondrial membrane
- term:
    id: GO:0005739
    label: mitochondrion
  evidence_type: HTP
  original_reference_id: PMID:34800366
  qualifier: located_in
  review:
    summary: >-
      High-throughput mitochondrial proteome localization to the mitochondrion.
      Correct but a generic parent of the specific inner-membrane localization.
    action: KEEP_AS_NON_CORE
    reason: >-
      Accurate compartment but less specific than GO:0005743 (mitochondrial inner
      membrane), which is experimentally established; keep as valid non-core.
    supported_by:
    - reference_id: file:human/UQCRH/UQCRH-uniprot.txt
      supporting_text: >-
        Mitochondrion inner membrane
- term:
    id: GO:0005743
    label: mitochondrial inner membrane
  evidence_type: ISS
  original_reference_id: GO_REF:0000024
  qualifier: located_in
  review:
    summary: >-
      Sequence-similarity transfer (from ortholog UniProtKB:P00127) of the mitochondrial
      inner membrane localization.
    action: ACCEPT
    reason: >-
      Correct, specific localization; consistent with experimental IDA and UniProt.
      Duplicate of the core CC term via orthology.
    supported_by:
    - reference_id: file:human/UQCRH/UQCRH-uniprot.txt
      supporting_text: >-
        Mitochondrion inner membrane
- term:
    id: GO:0008121
    label: quinol-cytochrome-c reductase activity
  evidence_type: IMP
  original_reference_id: PMID:34750991
  qualifier: enables
  review:
    summary: >-
      IMP based on the homozygous two-exon UQCRH deletion, which reduces Complex III
      (quinol-cytochrome-c reductase) activity to ~50-60% of control. This is the
      whole-complex catalytic activity; UQCRH is a non-catalytic structural/hinge
      subunit, so the loss of activity reflects a structural/assembly requirement,
      not catalysis by UQCRH itself.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      The catalytic centres of CIII are carried by cytochrome b (MT-CYB), cytochrome c1
      (CYC1) and the Rieske protein (UQCRFS1); UQCRH is explicitly a structural subunit
      whose precise function "remains to be fully elucidated" and which "hinges"
      cytochrome c to c1. The IMP phenotype (loss of UQCRH lowers CIII activity) is
      fully explained by a structural/assembly role, and does not demonstrate that UQCRH
      itself enables quinol-cytochrome-c reductase catalysis. Assigning the complex's
      catalytic MF to this non-catalytic subunit is an over-annotation; the subunit's
      MF is better captured as structural molecule activity (GO:0005198) contributing to
      the complex activity. Retained (experimental) but flagged.
    supported_by:
    - reference_id: PMID:34750991
      supporting_text: >-
        confirmed a specific decrease of CIII activity to approximately 60% compared
        to control cell lines
    - reference_id: PMID:34750991
      supporting_text: >-
        remains to be fully elucidated
    - reference_id: PMID:2826252
      supporting_text: >-
        and 'hinges' cytochrome c with cytochrome c1
- term:
    id: GO:0005739
    label: mitochondrion
  evidence_type: HDA
  original_reference_id: PMID:20833797
  qualifier: located_in
  review:
    summary: >-
      High-throughput direct assay (mitochondrial phosphoproteome of human muscle)
      localizing UQCRH to the mitochondrion.
    action: KEEP_AS_NON_CORE
    reason: >-
      Correct but generic parent of the specific inner-membrane localization; keep as
      valid non-core.
    supported_by:
    - reference_id: file:human/UQCRH/UQCRH-uniprot.txt
      supporting_text: >-
        Mitochondrion inner membrane
- term:
    id: GO:0005743
    label: mitochondrial inner membrane
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-164651
  qualifier: located_in
  review:
    summary: >-
      Reactome (TAS) localization to the mitochondrial inner membrane, from the pathway
      describing electron transfer from ubiquinol to cytochrome c by Complex III.
    action: ACCEPT
    reason: >-
      Correct, specific localization consistent with experimental and UniProt evidence.
      Duplicate of the core CC term.
    supported_by:
    - reference_id: Reactome:R-HSA-164651
      supporting_text: >-
        complex III transfers electrons from ubiquinol to cytochrome c, linking this
        process to translocation of protons across the membrane
- term:
    id: GO:0005743
    label: mitochondrial inner membrane
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-9906017
  qualifier: located_in
  review:
    summary: >-
      Reactome (TAS) inner-membrane localization from the CIII assembly pathway
      (UQCRFS1 processing). Correct localization for the assembled complex context.
    action: ACCEPT
    reason: >-
      Correct, specific localization; consistent with all other lines of evidence.
      Duplicate of the core CC term.
    supported_by:
    - reference_id: file:human/UQCRH/UQCRH-uniprot.txt
      supporting_text: >-
        Mitochondrion inner membrane
- term:
    id: GO:0005743
    label: mitochondrial inner membrane
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-9906042
  qualifier: located_in
  review:
    summary: >-
      Reactome (TAS) inner-membrane localization from the CIII assembly pathway
      (TTC19 clearance of UQCRFS1 fragments). Correct localization for the complex context.
    action: ACCEPT
    reason: >-
      Correct, specific localization; consistent with all other evidence. Duplicate of
      the core CC term.
    supported_by:
    - reference_id: file:human/UQCRH/UQCRH-uniprot.txt
      supporting_text: >-
        Mitochondrion inner membrane
- term:
    id: GO:0006119
    label: oxidative phosphorylation
  evidence_type: TAS
  original_reference_id: PMID:2826252
  qualifier: involved_in
  review:
    summary: >-
      TAS involvement in oxidative phosphorylation, reflecting Complex III's place in
      the OXPHOS electron transport chain that drives ATP synthesis.
    action: KEEP_AS_NON_CORE
    reason: >-
      Correct high-level BP context but broader than the specific core term GO:0006122;
      keep as valid non-core.
    supported_by:
    - reference_id: PMID:34750991
      supporting_text: >-
        CIII transports electrons from ubiquinol to cytochrome c and translocates
        protons across the inner mitochondrial membrane
- term:
    id: GO:0008121
    label: quinol-cytochrome-c reductase activity
  evidence_type: TAS
  original_reference_id: PMID:2826252
  qualifier: enables
  review:
    summary: >-
      TAS (PINC) assignment of quinol-cytochrome-c reductase activity, i.e. the whole
      Complex III catalytic activity, to UQCRH. UQCRH is the non-catalytic hinge subunit.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      As with the IMP annotation to the same term, this attributes the complex's
      catalytic MF to a structural, non-catalytic subunit. The 1987 paper itself
      describes UQCRH only as a subunit that "hinges" cytochrome c to c1, not as the
      catalytic entity. Better represented as structural molecule activity contributing
      to the complex activity; flagged as over-annotation.
    supported_by:
    - reference_id: PMID:2826252
      supporting_text: >-
        and 'hinges' cytochrome c with cytochrome c1
- term:
    id: GO:0009060
    label: aerobic respiration
  evidence_type: TAS
  original_reference_id: PMID:2826252
  qualifier: involved_in
  review:
    summary: >-
      TAS involvement in aerobic respiration, reflecting the role of the ubiquinol-cytochrome-c
      reductase in the aerobic respiratory chain.
    action: KEEP_AS_NON_CORE
    reason: >-
      Correct high-level BP context but broader than the specific core term GO:0006122;
      keep as valid non-core.
    supported_by:
    - reference_id: PMID:2826252
      supporting_text: >-
        Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase
        in
- term:
    id: GO:0098803
    label: respiratory chain complex
  evidence_type: TAS
  original_reference_id: PMID:2826252
  qualifier: located_in
  review:
    summary: >-
      TAS assignment of UQCRH to a respiratory chain complex. Correct but generic parent
      of the specific respiratory chain complex III term.
    action: KEEP_AS_NON_CORE
    reason: >-
      Accurate but less specific than GO:0045275 (respiratory chain complex III); keep
      as valid non-core.
    supported_by:
    - reference_id: PMID:2826252
      supporting_text: >-
        Mitochondrial hinge protein is a subunit of ubiquinol-cytochrome-c reductase
        in
core_functions:
- description: >-
    Non-catalytic structural (hinge) subunit of mitochondrial respiratory Complex III
    (cytochrome bc1); provides the acidic docking interface that positions cytochrome c
    against cytochrome c1, contributing to the quinol-cytochrome-c reductase activity of
    the assembled complex and stabilizing the holoenzyme.
  molecular_function:
    id: GO:0005198
    label: structural molecule activity
  directly_involved_in:
  - id: GO:0006122
    label: mitochondrial electron transport, ubiquinol to cytochrome c
  locations:
  - id: GO:0005743
    label: mitochondrial inner membrane
  in_complex:
    id: GO:0045275
    label: respiratory chain complex III
  contributes_to_molecular_function:
    id: GO:0008121
    label: quinol-cytochrome-c reductase activity
  supported_by:
  - reference_id: PMID:2826252
    supporting_text: >-
      and 'hinges' cytochrome c with cytochrome c1
  - reference_id: PMID:34750991
    supporting_text: >-
      encodes a structural complex III (CIII) subunit
proposed_new_terms: []
suggested_questions:
- question: >-
    Does UQCRH have any role beyond CIII assembly/structure and cytochrome c docking
    (e.g. a regulatory or supercomplex-organizing role), given the altered supercomplex
    distribution observed upon its loss?
suggested_experiments:
- description: >-
    Structure-guided mutagenesis of the acidic N-terminal region and the cytochrome c
    docking surface of UQCRH to quantify effects on cytochrome c1-cytochrome c electron
    transfer versus overall CIII assembly and stability.
  hypothesis: >-
    The acidic hinge region of UQCRH is specifically required for cytochrome c docking
    and c1-to-c electron transfer, separable from its contribution to CIII holoenzyme
    assembly/stability.
references:
- id: GO_REF:0000002
  title: Gene Ontology annotation through association of InterPro records with GO
    terms
  findings: []
- id: GO_REF:0000024
  title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
    by curator judgment of sequence similarity
  findings: []
- id: GO_REF:0000033
  title: Annotation inferences using phylogenetic trees
  findings: []
- id: GO_REF:0000044
  title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
    vocabulary mapping, accompanied by conservative changes to GO terms applied by
    UniProt
  findings: []
- id: GO_REF:0000108
  title: Automatic assignment of GO terms using logical inference, based on on inter-ontology
    links
  findings: []
- id: GO_REF:0000117
  title: Electronic Gene Ontology annotations created by ARBA machine learning models
  findings: []
- id: PMID:20833797
  title: Phosphoproteome analysis of functional mitochondria isolated from resting
    human muscle reveals extensive phosphorylation of inner membrane protein complexes
    and enzymes.
  findings: []
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: >-
      High-throughput mitochondrial phosphoproteome; supports mitochondrion localization
      only (HDA).
- id: PMID:25416956
  title: A proteome-scale map of the human interactome network.
  findings: []
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: >-
      Proteome-scale binary interactome; source of a bare protein-binding IPI with
      non-CIII partners; not informative for UQCRH's core function.
- id: PMID:2826252
  title: An extremely acidic amino-terminal presequence of the precursor for the human
    mitochondrial hinge protein.
  findings: []
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      Original cloning of the human hinge protein; establishes it as a CIII subunit that
      "hinges" cytochrome c to cytochrome c1 and has an unusually acidic import presequence.
- id: PMID:28844695
  title: Architecture of Human Mitochondrial Respiratory Megacomplex I(2)III(2)IV(2).
  findings: []
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      Cryo-EM of the human respiratory megacomplex; resolves UQCRH within the CIII dimer
      in the inner membrane; basis for ComplexPortal IDA/IPI/NAS annotations.
- id: PMID:32296183
  title: A reference map of the human binary protein interactome.
  findings: []
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: >-
      HuRI reference binary interactome; source of a bare protein-binding IPI with
      non-CIII partners; not informative for UQCRH's core function.
- id: PMID:34750991
  title: 'Characterising a homozygous two-exon deletion in UQCRH: comparing human
    and mouse phenotypes.'
  findings: []
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      First disease report and functional (IMP) study; homozygous UQCRH deletion causes
      CIII deficiency (~50-60% residual activity) in patients and a matching mouse model;
      explicitly describes UQCRH as a structural CIII subunit that links cytochromes c and c1.
- id: PMID:34800366
  title: Quantitative high-confidence human mitochondrial proteome and its dynamics
    in cellular context.
  findings: []
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: >-
      High-confidence mitochondrial proteome; supports mitochondrion localization (HTP).
- id: Reactome:R-HSA-164651
  title: Electron transfer from ubiquinol to cytochrome c of complex III
  findings: []
- id: Reactome:R-HSA-9906017
  title: Unknown peptidase cleaves UQCRFS1 subunit
  findings: []
- id: Reactome:R-HSA-9906042
  title: TTC19 clears UQCRFS1 fragments from Complex III
  findings: []
- id: file:human/UQCRH/UQCRH-uniprot.txt
  title: UniProtKB P07919 (QCR6_HUMAN) Cytochrome b-c1 complex subunit 6, mitochondrial
  findings: []