TODO: Add description for Ccnb1
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0000082
G1/S transition of mitotic cell cycle
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005634
nucleus
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005737
cytoplasm
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0016538
cyclin-dependent protein serine/threonine kinase regulator activity
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005815
microtubule organizing center
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005759
mitochondrial matrix
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0097125
cyclin B1-CDK1 complex
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0007080
mitotic metaphase chromosome alignment
|
IBA
GO_REF:0000033 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005813
centrosome
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0016538
cyclin-dependent protein serine/threonine kinase regulator activity
|
IEA
GO_REF:0000002 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0044772
mitotic cell cycle phase transition
|
IEA
GO_REF:0000002 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0051301
cell division
|
IEA
GO_REF:0000043 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000922
spindle pole
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000940
outer kinetochore
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0001556
oocyte maturation
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005113
patched binding
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005759
mitochondrial matrix
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005829
cytosol
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0007052
mitotic spindle organization
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0007080
mitotic metaphase chromosome alignment
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0007283
spermatogenesis
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0009410
response to xenobiotic stimulus
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0009612
response to mechanical stimulus
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0009636
response to toxic substance
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0010629
negative regulation of gene expression
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0010971
positive regulation of G2/M transition of mitotic cell cycle
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0019901
protein kinase binding
|
IEA
GO_REF:0000120 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0031442
positive regulation of mRNA 3'-end processing
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0042246
tissue regeneration
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0044389
ubiquitin-like protein ligase binding
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0045931
positive regulation of mitotic cell cycle
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0046680
response to DDT
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0048565
digestive tract development
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0051987
positive regulation of attachment of spindle microtubules to kinetochore
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0055015
ventricular cardiac muscle cell development
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0060045
positive regulation of cardiac muscle cell proliferation
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0060623
regulation of chromosome condensation
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0061575
cyclin-dependent protein serine/threonine kinase activator activity
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0065003
protein-containing complex assembly
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0071283
cellular response to iron(III) ion
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0071398
cellular response to fatty acid
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0071456
cellular response to hypoxia
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0090266
regulation of mitotic cell cycle spindle assembly checkpoint
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0097125
cyclin B1-CDK1 complex
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:1905448
positive regulation of mitochondrial ATP synthesis coupled electron transport
|
IEA
GO_REF:0000107 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0001933
negative regulation of protein phosphorylation
|
ISO
GO_REF:0000096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005634
nucleus
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0045860
positive regulation of protein kinase activity
|
ISO
GO_REF:0000096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000922
spindle pole
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0000940
outer kinetochore
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0001556
oocyte maturation
|
ISO
GO_REF:0000096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005113
patched binding
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005737
cytoplasm
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005759
mitochondrial matrix
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005813
centrosome
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005829
cytosol
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0007052
mitotic spindle organization
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0007080
mitotic metaphase chromosome alignment
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0010629
negative regulation of gene expression
|
ISO
GO_REF:0000096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0010971
positive regulation of G2/M transition of mitotic cell cycle
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0019901
protein kinase binding
|
ISO
GO_REF:0000096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0019901
protein kinase binding
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0031442
positive regulation of mRNA 3'-end processing
|
ISO
GO_REF:0000096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0044389
ubiquitin-like protein ligase binding
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0044877
protein-containing complex binding
|
ISO
GO_REF:0000096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0045931
positive regulation of mitotic cell cycle
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0051987
positive regulation of attachment of spindle microtubules to kinetochore
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0060045
positive regulation of cardiac muscle cell proliferation
|
ISO
GO_REF:0000096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0060623
regulation of chromosome condensation
|
ISO
GO_REF:0000096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0061575
cyclin-dependent protein serine/threonine kinase activator activity
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0065003
protein-containing complex assembly
|
ISO
GO_REF:0000096 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0090266
regulation of mitotic cell cycle spindle assembly checkpoint
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0097125
cyclin B1-CDK1 complex
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:1905448
positive regulation of mitochondrial ATP synthesis coupled electron transport
|
ISO
GO_REF:0000119 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005515
protein binding
|
IPI
PMID:12124778 GADD45b and GADD45g are cdc2/cyclinB1 kinase inhibitors with... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:12124778
GADD45b and GADD45g are cdc2/cyclinB1 kinase inhibitors with a role in S and G2/M cell cycle checkpoints induced by genotoxic stress.
|
|
GO:0005759
mitochondrial matrix
|
IDA
PMID:24746669 Cyclin B1/Cdk1 coordinates mitochondrial respiration for cel... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:24746669
2014 Apr 17. Cyclin B1/Cdk1 coordinates mitochondrial respiration for cell-cycle G2/M progression.
|
|
GO:0005634
nucleus
|
IDA
PMID:17325031 Loss of Cdc20 causes a securin-dependent metaphase arrest in... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17325031
Loss of Cdc20 causes a securin-dependent metaphase arrest in two-cell mouse embryos.
|
|
GO:0005737
cytoplasm
|
IDA
PMID:17325031 Loss of Cdc20 causes a securin-dependent metaphase arrest in... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:17325031
Loss of Cdc20 causes a securin-dependent metaphase arrest in two-cell mouse embryos.
|
|
GO:0045787
positive regulation of cell cycle
|
IDA
PMID:22053081 Upregulation of Cyclin B1 by miRNA and its implications in c... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:22053081
Nov 3. Upregulation of Cyclin B1 by miRNA and its implications in cancer.
|
|
GO:0048146
positive regulation of fibroblast proliferation
|
IMP
PMID:22053081 Upregulation of Cyclin B1 by miRNA and its implications in c... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:22053081
Nov 3. Upregulation of Cyclin B1 by miRNA and its implications in cancer.
|
|
GO:0016020
membrane
|
IDA
PMID:9539739 Cyclin B2-null mice develop normally and are fertile whereas... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:9539739
Cyclin B2-null mice develop normally and are fertile whereas cyclin B1-null mice die in utero.
|
|
GO:0005813
centrosome
|
ISS
GO_REF:0000024 |
PENDING |
Summary: TODO: Review this GOA annotation
|
|
GO:0005634
nucleus
|
IDA
PMID:19376971 Role of Filia, a maternal effect gene, in maintaining euploi... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:19376971
Role of Filia, a maternal effect gene, in maintaining euploidy during cleavage-stage mouse embryogenesis.
|
|
GO:0005634
nucleus
|
IDA
PMID:16489008 Patched1 functions as a gatekeeper by promoting cell cycle p... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:16489008
Patched1 functions as a gatekeeper by promoting cell cycle progression.
|
|
GO:0001701
in utero embryonic development
|
IMP
PMID:9539739 Cyclin B2-null mice develop normally and are fertile whereas... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:9539739
Cyclin B2-null mice develop normally and are fertile whereas cyclin B1-null mice die in utero.
|
|
GO:0005634
nucleus
|
ISO
PMID:16109376 The bromodomain protein Brd4 is a positive regulatory compon... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:16109376
The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription.
|
|
GO:0005634
nucleus
|
IDA
PMID:14993286 Cyclin F disruption compromises placental development and af... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:14993286
Cyclin F disruption compromises placental development and affects normal cell cycle execution.
|
|
GO:0006468
protein phosphorylation
|
IDA
PMID:12124778 GADD45b and GADD45g are cdc2/cyclinB1 kinase inhibitors with... |
MODIFY |
Summary: OVER-ANNOTATION: Cyclin B1 does NOT catalyze phosphorylation itself - it activates CDK1 (Cdc2) which performs the catalytic phosphorylation. PMID:12124778 studies the "Cdk1/CyclinB1 kinase complex" where the kinase activity belongs to CDK1. UniProt confirms: "Interacts with the CDC2 protein kinase to form a serine/threonine kinase holoenzyme complex...The cyclin subunit imparts substrate specificity to the complex." The correct annotation should be to kinase activator activity (GO:0061575, already annotated via IEA) rather than the phosphorylation process.
Proposed replacements:
regulation of protein kinase activity
Supporting Evidence:
PMID:12124778
GADD45b and GADD45g are cdc2/cyclinB1 kinase inhibitors with a role in S and G2/M cell cycle checkpoints induced by genotoxic stress.
|
|
GO:0005515
protein binding
|
IPI
PMID:12525704 RFPL4 interacts with oocyte proteins of the ubiquitin-protea... |
PENDING |
Summary: TODO: Review this GOA annotation
Supporting Evidence:
PMID:12525704
RFPL4 interacts with oocyte proteins of the ubiquitin-proteasome degradation pathway.
|
id: P24860
gene_symbol: Ccnb1
product_type: PROTEIN
status: INITIALIZED
taxon:
id: NCBITaxon:10090
label: Mus musculus
description: 'TODO: Add description for Ccnb1'
existing_annotations:
- term:
id: GO:0000082
label: G1/S transition of mitotic cell cycle
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005634
label: nucleus
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0016538
label: cyclin-dependent protein serine/threonine kinase regulator activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005815
label: microtubule organizing center
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0097125
label: cyclin B1-CDK1 complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0007080
label: mitotic metaphase chromosome alignment
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005813
label: centrosome
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0016538
label: cyclin-dependent protein serine/threonine kinase regulator activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0044772
label: mitotic cell cycle phase transition
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0051301
label: cell division
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000922
label: spindle pole
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000940
label: outer kinetochore
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0001556
label: oocyte maturation
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005113
label: patched binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005829
label: cytosol
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0007052
label: mitotic spindle organization
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0007080
label: mitotic metaphase chromosome alignment
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0007283
label: spermatogenesis
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0009410
label: response to xenobiotic stimulus
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0009612
label: response to mechanical stimulus
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0009636
label: response to toxic substance
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0010629
label: negative regulation of gene expression
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0010971
label: positive regulation of G2/M transition of mitotic cell cycle
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0019901
label: protein kinase binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0031442
label: positive regulation of mRNA 3'-end processing
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0042246
label: tissue regeneration
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0044389
label: ubiquitin-like protein ligase binding
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0045931
label: positive regulation of mitotic cell cycle
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0046680
label: response to DDT
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0048565
label: digestive tract development
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0051987
label: positive regulation of attachment of spindle microtubules to
kinetochore
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0055015
label: ventricular cardiac muscle cell development
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0060045
label: positive regulation of cardiac muscle cell proliferation
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0060623
label: regulation of chromosome condensation
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0061575
label: cyclin-dependent protein serine/threonine kinase activator activity
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0065003
label: protein-containing complex assembly
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0071283
label: cellular response to iron(III) ion
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0071398
label: cellular response to fatty acid
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0071456
label: cellular response to hypoxia
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0090266
label: regulation of mitotic cell cycle spindle assembly checkpoint
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0097125
label: cyclin B1-CDK1 complex
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:1905448
label: positive regulation of mitochondrial ATP synthesis coupled electron
transport
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0001933
label: negative regulation of protein phosphorylation
evidence_type: ISO
original_reference_id: GO_REF:0000096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005634
label: nucleus
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0045860
label: positive regulation of protein kinase activity
evidence_type: ISO
original_reference_id: GO_REF:0000096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000922
label: spindle pole
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0000940
label: outer kinetochore
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0001556
label: oocyte maturation
evidence_type: ISO
original_reference_id: GO_REF:0000096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005113
label: patched binding
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005737
label: cytoplasm
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005813
label: centrosome
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005829
label: cytosol
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0007052
label: mitotic spindle organization
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0007080
label: mitotic metaphase chromosome alignment
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0010629
label: negative regulation of gene expression
evidence_type: ISO
original_reference_id: GO_REF:0000096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0010971
label: positive regulation of G2/M transition of mitotic cell cycle
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0019901
label: protein kinase binding
evidence_type: ISO
original_reference_id: GO_REF:0000096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0019901
label: protein kinase binding
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0031442
label: positive regulation of mRNA 3'-end processing
evidence_type: ISO
original_reference_id: GO_REF:0000096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0044389
label: ubiquitin-like protein ligase binding
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0044877
label: protein-containing complex binding
evidence_type: ISO
original_reference_id: GO_REF:0000096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0045931
label: positive regulation of mitotic cell cycle
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0051987
label: positive regulation of attachment of spindle microtubules to
kinetochore
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0060045
label: positive regulation of cardiac muscle cell proliferation
evidence_type: ISO
original_reference_id: GO_REF:0000096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0060623
label: regulation of chromosome condensation
evidence_type: ISO
original_reference_id: GO_REF:0000096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0061575
label: cyclin-dependent protein serine/threonine kinase activator activity
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0065003
label: protein-containing complex assembly
evidence_type: ISO
original_reference_id: GO_REF:0000096
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0090266
label: regulation of mitotic cell cycle spindle assembly checkpoint
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0097125
label: cyclin B1-CDK1 complex
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:1905448
label: positive regulation of mitochondrial ATP synthesis coupled electron
transport
evidence_type: ISO
original_reference_id: GO_REF:0000119
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:12124778
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:12124778
supporting_text: GADD45b and GADD45g are cdc2/cyclinB1 kinase
inhibitors with a role in S and G2/M cell cycle checkpoints induced
by genotoxic stress.
- term:
id: GO:0005759
label: mitochondrial matrix
evidence_type: IDA
original_reference_id: PMID:24746669
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:24746669
supporting_text: 2014 Apr 17. Cyclin B1/Cdk1 coordinates mitochondrial
respiration for cell-cycle G2/M progression.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:17325031
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17325031
supporting_text: Loss of Cdc20 causes a securin-dependent metaphase
arrest in two-cell mouse embryos.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:17325031
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:17325031
supporting_text: Loss of Cdc20 causes a securin-dependent metaphase
arrest in two-cell mouse embryos.
- term:
id: GO:0045787
label: positive regulation of cell cycle
evidence_type: IDA
original_reference_id: PMID:22053081
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:22053081
supporting_text: Nov 3. Upregulation of Cyclin B1 by miRNA and its
implications in cancer.
- term:
id: GO:0048146
label: positive regulation of fibroblast proliferation
evidence_type: IMP
original_reference_id: PMID:22053081
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:22053081
supporting_text: Nov 3. Upregulation of Cyclin B1 by miRNA and its
implications in cancer.
- term:
id: GO:0016020
label: membrane
evidence_type: IDA
original_reference_id: PMID:9539739
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:9539739
supporting_text: Cyclin B2-null mice develop normally and are fertile
whereas cyclin B1-null mice die in utero.
- term:
id: GO:0005813
label: centrosome
evidence_type: ISS
original_reference_id: GO_REF:0000024
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:19376971
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:19376971
supporting_text: Role of Filia, a maternal effect gene, in maintaining
euploidy during cleavage-stage mouse embryogenesis.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:16489008
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:16489008
supporting_text: Patched1 functions as a gatekeeper by promoting cell
cycle progression.
- term:
id: GO:0001701
label: in utero embryonic development
evidence_type: IMP
original_reference_id: PMID:9539739
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:9539739
supporting_text: Cyclin B2-null mice develop normally and are fertile
whereas cyclin B1-null mice die in utero.
- term:
id: GO:0005634
label: nucleus
evidence_type: ISO
original_reference_id: PMID:16109376
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:16109376
supporting_text: The bromodomain protein Brd4 is a positive regulatory
component of P-TEFb and stimulates RNA polymerase II-dependent
transcription.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:14993286
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:14993286
supporting_text: Cyclin F disruption compromises placental development
and affects normal cell cycle execution.
- term:
id: GO:0006468
label: protein phosphorylation
evidence_type: IDA
original_reference_id: PMID:12124778
review:
summary: >-
OVER-ANNOTATION: Cyclin B1 does NOT catalyze phosphorylation itself - it activates
CDK1 (Cdc2) which performs the catalytic phosphorylation. PMID:12124778 studies
the
"Cdk1/CyclinB1 kinase complex" where the kinase activity belongs to CDK1.
UniProt
confirms: "Interacts with the CDC2 protein kinase to form a serine/threonine
kinase
holoenzyme complex...The cyclin subunit imparts substrate specificity to the
complex."
The correct annotation should be to kinase activator activity (GO:0061575,
already
annotated via IEA) rather than the phosphorylation process.
action: MODIFY
proposed_replacement_terms:
- id: GO:0045859
label: regulation of protein kinase activity
supported_by:
- reference_id: PMID:12124778
supporting_text: GADD45b and GADD45g are cdc2/cyclinB1 kinase
inhibitors with a role in S and G2/M cell cycle checkpoints induced
by genotoxic stress.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:12525704
review:
summary: 'TODO: Review this GOA annotation'
action: PENDING
supported_by:
- reference_id: PMID:12525704
supporting_text: RFPL4 interacts with oocyte proteins of the
ubiquitin-proteasome degradation pathway.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with
GO terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data
to orthologs by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword
mapping
findings: []
- id: GO_REF:0000096
title: Automated transfer of experimentally-verified manual GO annotation
data to mouse-rat orthologs
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation
data to orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000119
title: Automated transfer of experimentally-verified manual GO annotation
data to mouse-human orthologs
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:12124778
title: GADD45b and GADD45g are cdc2/cyclinB1 kinase inhibitors with a role
in S and G2/M cell cycle checkpoints induced by genotoxic stress.
findings: []
- id: PMID:12525704
title: RFPL4 interacts with oocyte proteins of the ubiquitin-proteasome
degradation pathway.
findings: []
- id: PMID:14993286
title: Cyclin F disruption compromises placental development and affects
normal cell cycle execution.
findings: []
- id: PMID:16109376
title: The bromodomain protein Brd4 is a positive regulatory component of
P-TEFb and stimulates RNA polymerase II-dependent transcription.
findings: []
- id: PMID:16489008
title: Patched1 functions as a gatekeeper by promoting cell cycle
progression.
findings: []
- id: PMID:17325031
title: Loss of Cdc20 causes a securin-dependent metaphase arrest in two-cell
mouse embryos.
findings: []
- id: PMID:19376971
title: Role of Filia, a maternal effect gene, in maintaining euploidy during
cleavage-stage mouse embryogenesis.
findings: []
- id: PMID:22053081
title: Upregulation of Cyclin B1 by miRNA and its implications in cancer.
findings: []
- id: PMID:24746669
title: Cyclin B1/Cdk1 coordinates mitochondrial respiration for cell-cycle
G2/M progression.
findings: []
- id: PMID:9539739
title: Cyclin B2-null mice develop normally and are fertile whereas cyclin
B1-null mice die in utero.
findings: []