Cftr (Cystic fibrosis transmembrane conductance regulator) is an ATP-gated anion channel that conducts chloride and bicarbonate ions across epithelial cell membranes. Unlike most ABC transporters, CFTR functions as an ion channel rather than an active pump. Essential for fluid secretion in airways, pancreas, and intestine. Mouse Cftr is used as a model for cystic fibrosis disease mechanisms and therapeutic development.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0005886 plasma membrane | IBA GO_REF:0000033 | ACCEPT | Summary: IBA annotation consistent with CFTR being a multi-pass apical cell membrane protein. Reason: CFTR is annotated as a multi-pass cell membrane protein with apical membrane localization in epithelial cells. Supporting Evidence: UniProtKB:P26361 Cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:22265409}; Multi-pass |
| GO:0140359 ABC-type transporter activity | IBA GO_REF:0000033 | MARK AS OVER ANNOTATED | Summary: CFTR is an ABC transporter family member but functions as an ATP-gated anion channel rather than an active transporter. Reason: The ABC transporter activity term implies ATP-driven substrate transport, while CFTR primarily gates passive anion flow using ATP binding/hydrolysis. Propagation Review Root cause: PROPAGATION BAD Failure modes: FUNCTIONAL DIVERGENCE Sources checked: PANTHER:PTN009085477 Β· ancestral node of PANTHER family PTHR24223 (ATP-BINDING CASSETTE SUB-FAMILY C) SUPPORTS SOURCE BUT NOT TARGET A deep, broadly seeded ABC node with plant, fission-yeast, budding-yeast, fly and rodent members, for which ATP-hydrolysis-driven substrate translocation is the correct ancestral activity. CFTR is the family's channel exception - it keeps both nucleotide-binding domains and hydrolyses ATP, but spends those cycles gating a passive anion pore rather than pumping a substrate - so the node's activity should not follow descent onto it. The channel behaviour is captured instead by the intracellularly ATP-gated chloride channel activity row, which this review accepts. SGD:S000002542 SUPPORTS SOURCE BUT NOT TARGET Budding-yeast ABC seed, cited by identifier because the local index does not resolve it; its evidence supports the node's transporter activity, not CFTR's channel behaviour. TAIR:locus:2061559 SUPPORTS SOURCE BUT NOT TARGET Arabidopsis ABC seed, cited by identifier only; it contributes to the depth of the node's transporter assertion, which is sound for the node and wrong only for the channel member. Supporting Evidence: UniProtKB:P26361 Possesses an intrinsic ATPase activity and utilizes ATP to gate its channel; the passive flow of anions through the channel is gated by cycles of ATP binding and hydrolysis by the ATP-binding domains (By similarity). file:mouse/Cftr/Cftr-deep-research-falcon.md CFTR (mouse **Cftr/Abcc7**) is a member of the **ATP-binding cassette (ABC) transporter superfamily (ABCC subfamily)** but is unusual in that it functions primarily as a **regulated anion channel** rather than a classical active transporter. |
| GO:0016323 basolateral plasma membrane | IBA GO_REF:0000033 | MARK AS OVER ANNOTATED | Summary: Basolateral plasma membrane is a specific membrane domain mouse Cftr does not occupy, and the seed set behind this node points to a basolaterally distributed ABCC paralog rather than to CFTR. Reason: Apical and basolateral plasma membrane are disjoint sibling domains, neither subsuming the other, so this is not a case of a broad compartment merely being imprecise. Mouse Cftr's own experimental localization in GOA is apical plasma membrane (two independent IDA rows) with no basolateral evidence, and UniProt gives the apical cell membrane. The IBD sits at PANTHER node PTN002384279 in PTHR24223 (ATP-BINDING CASSETTE SUB-FAMILY C), and the seed carrying this term is human ABCC4, an ABCC exporter that is basolateral in several epithelia; the basolateral domain is that member's property and does not follow descent onto CFTR. Marked over-annotated rather than removed because CFTR trafficking is regulated and a minor basolateral pool in particular cell types cannot be excluded from the evidence in hand. Propagation Review Root cause: PROPAGATION BAD Failure modes: COMPARTMENT OR COMPLEX MISMATCH WRONG ORTHOLOG OR PARALOG Sources checked: PANTHER:PTN002384279 Β· node within PANTHER family PTHR24223 (ATP-BINDING CASSETTE SUB-FAMILY C) SUPPORTS SOURCE BUT NOT TARGET The basolateral-membrane IBD sits at this ABCC node. Which face of a polarized epithelial cell a transporter reaches is set by member-specific sorting determinants, not by descent, so a membrane-domain term is not the kind of property that should propagate along this node even where the transport biology does. UniProtKB:O15439 Β· human ABCC4 (ATP-binding cassette sub-family C member 4) SUPPORTS SOURCE BUT NOT TARGET The seed carrying the basolateral term. ABCC4 is basolaterally distributed in several epithelia, and that evidence is sound for ABCC4 itself, but it describes a different ABCC member; mouse Cftr's own experimental localization is apical, with no basolateral evidence in GOA. MGI:MGI:2443111 UNRESOLVED A further seed at this node. The local index does not resolve the identifier, so no claim is made about which gene it is or what it contributes. Supporting Evidence: UniProtKB:P26361 Apical cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:21884936}; Multi-pass |
| GO:0005260 intracellularly ATP-gated chloride channel activity | IBA GO_REF:0000033 | ACCEPT | Summary: IBA annotation consistent with ATP-gated chloride channel function. Reason: CFTR gating depends on ATP binding/hydrolysis by its nucleotide-binding domains, producing ATP-gated chloride channel activity. Supporting Evidence: UniProtKB:P26361 Possesses an intrinsic ATPase activity and utilizes ATP to gate its channel; the passive flow of anions through the channel is gated by cycles of ATP binding and hydrolysis by the ATP-binding domains (By similarity). file:mouse/Cftr/Cftr-deep-research-falcon.md CFTR activity requires (i) **phosphorylation of the R domain** (typically via **cAMP/PKA signaling**; intestinal-specific PKG contributions are also described) and (ii) **ATP binding and NBD dimerization** to open the channel, with **ATP hydrolysis at site 2** promoting closure (dissociation of the NBD dimer). |
| GO:0006833 water transport | IBA GO_REF:0000033 | KEEP AS NON CORE | Summary: CFTR regulates epithelial ion and water transport indirectly through ion movement and fluid homeostasis. Reason: CFTR-driven anion transport supports epithelial water transport but is not a direct water channel. Supporting Evidence: UniProtKB:P26361 Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis |
| GO:0015701 bicarbonate transport | IBA GO_REF:0000033 | KEEP AS NON CORE | Summary: IBA annotation consistent with CFTR permeability to bicarbonate. Reason: CFTR is permeable to HCO3- and contributes to epithelial bicarbonate handling, though chloride transport is the core function. Supporting Evidence: UniProtKB:P26361 The ion channel is also permeable to HCO(3)(-); selectivity depends on the extracellular chloride concentration. file:mouse/Cftr/Cftr-deep-research-falcon.md The primary function of CFTR is to conduct **anions**, especially **chloride (Clβ)** and **bicarbonate (HCO3β)**, across epithelial plasma membranes down electrochemical gradients to drive fluid and electrolyte transport and regulate pH. |
| GO:1902476 chloride transmembrane transport | IBA GO_REF:0000033 | ACCEPT | Summary: IBA annotation reflecting CFTR-mediated chloride movement across membranes. Reason: CFTR mediates chloride ion transport across the cell membrane as its primary physiological role. Supporting Evidence: UniProtKB:P26361 Mediates the transport of chloride ions across the cell membrane (PubMed:20231442, PubMed:22265409). |
| GO:0005829 cytosol | IBA GO_REF:0000033 | KEEP AS NON CORE | Summary: Cytosol reflects CFTR's large cytosol-facing regulatory and nucleotide-binding domains and is directly observed for mouse Cftr, but the compartment where CFTR does its work is the apical plasma membrane, so this is retained as non-core. Reason: Unlike the basolateral row, this one rests on direct experimental evidence - mouse Cftr carries its own curated IDA cytosol annotation in GOA (PMID:24885604). That experimental annotation is what grounds this propagation - the IBD at PANTHER node PTN002795422 carries this term on mouse Cftr (MGI:88388) and human CFTR (P13569) themselves - so there is no propagation failure to report here. A broad or adjacent compartment over a more specific true location is not grounds for a flag; the annotation is simply uninformative about the functional compartment, so it is kept as non-core rather than marked over-annotated. Propagation Review Root cause: NO FAILURE NON CORE Sources checked: PANTHER:PTN002795422 Β· node within PANTHER family PTHR24223 (ATP-BINDING CASSETTE SUB-FAMILY C) SUPPORTS TRANSFER The cytosol IBD is carried on this node with mouse Cftr and human CFTR as its seeds for the term, so the assertion rests on experimental observation of CFTR itself rather than on a family-level generalization from other ABC transporters. MGI:MGI:88388 Β· mouse Cftr (this gene) SUPPORTS TRANSFER The target's own IBD seed. Mouse Cftr's IDA cytosol annotation in GOA is one of the descendant evidences behind this node, so its appearance here marks experimental grounding on the target itself. UniProtKB:P13569 Β· human CFTR (cystic fibrosis transmembrane conductance regulator) SUPPORTS TRANSFER The human orthologue. CFTR's regulatory domain and its two nucleotide-binding domains face and act in the cytosol, which is the part of the protein a cytosol annotation records; the term is imprecise about the functional compartment rather than mistaken about the protein. Supporting Evidence: UniProtKB:P26361 Apical cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:21884936}; Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0016324 apical plasma membrane | IBA GO_REF:0000033 | ACCEPT | Summary: IBA annotation for apical membrane localization of CFTR in epithelial cells. Reason: CFTR localizes to the apical cell membrane where it forms chloride channels. Supporting Evidence: UniProtKB:P26361 Apical cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:21884936}; Multi-pass file:mouse/Cftr/Cftr-deep-research-perplexity.md The cystic fibrosis transmembrane conductance regulator (CFTR), encoded by the murine *Cftr* gene (UniProt P26361), is a multifunctional ATP-binding cassette (ABC) transporter family member that functions uniquely as a phosphorylation-dependent, ATP-regulated chloride ion channel located at the apical plasma membrane of epithelial cells[1][6]. file:mouse/Cftr/Cftr-deep-research-falcon.md CFTR is predominantly localized to the **apical plasma membrane** of polarized epithelial cells, including airway, intestinal, pancreatic duct, sweat duct, and reproductive tract epithelia. |
| GO:0000166 nucleotide binding | IEA GO_REF:0000043 | KEEP AS NON CORE | Summary: General nucleotide binding annotation capturing ATP binding by CFTR nucleotide-binding domains. Reason: ATP binding is necessary for channel gating but is not the primary molecular function compared to chloride channel activity. Supporting Evidence: UniProtKB:P26361 Possesses an intrinsic ATPase activity and utilizes ATP to gate its channel; the passive flow of anions through the channel is gated by cycles of ATP binding and hydrolysis by the ATP-binding domains (By similarity). |
| GO:0005254 chloride channel activity | IEA GO_REF:0000120 | ACCEPT | Summary: CFTR functions as a chloride channel in epithelial membranes. Reason: CFTR forms a chloride channel in the apical membrane and is activated by cAMP/PKA signaling. Supporting Evidence: PMID:20231442 Here, we establish that CFTR forms protein kinase A (PKA)-activated Cl(-) channels in the apical membrane of principal cells from the cortical collecting duct obtained from mice. file:mouse/Cftr/Cftr-deep-research-falcon.md CFTR is described as an anion-selective channel conducting **chloride and bicarbonate** across apical epithelial membranes. |
| GO:0005260 intracellularly ATP-gated chloride channel activity | IEA GO_REF:0000120 | ACCEPT | Summary: Automated annotation for ATP-gated chloride channel activity. Reason: CFTR gating depends on ATP binding/hydrolysis by its nucleotide-binding domains, enabling ATP-gated chloride conductance. Supporting Evidence: UniProtKB:P26361 Possesses an intrinsic ATPase activity and utilizes ATP to gate its channel; the passive flow of anions through the channel is gated by cycles of ATP binding and hydrolysis by the ATP-binding domains (By similarity). |
| GO:0005524 ATP binding | IEA GO_REF:0000120 | ACCEPT | Summary: ATP binding by CFTR nucleotide-binding domains drives channel gating. Reason: ATP binding is required for channel opening in the CFTR gating cycle. Supporting Evidence: UniProtKB:P26361 Possesses an intrinsic ATPase activity and utilizes ATP to gate its channel; the passive flow of anions through the channel is gated by cycles of ATP binding and hydrolysis by the ATP-binding domains (By similarity). file:mouse/Cftr/Cftr-deep-research-falcon.md ATP binding promotes NBD1/NBD2 dimerization and pore opening; ATP hydrolysis at the composite active site drives channel closure. |
| GO:0005634 nucleus | IEA GO_REF:0000044 | KEEP AS NON CORE | Summary: Processed CFTR products have been detected in the nucleus in specific contexts. Reason: Nuclear localization is context-specific and not central to CFTR channel activity. Supporting Evidence: UniProtKB:P26361 Nucleus {ECO:0000250|UniProtKB:P34158}. |
| GO:0005789 endoplasmic reticulum membrane | IEA GO_REF:0000120 | KEEP AS NON CORE | Summary: ER membrane localization reflects CFTR biogenesis and trafficking. Reason: CFTR is synthesized and processed in the ER before trafficking to the plasma membrane. Supporting Evidence: UniProtKB:P26361 Endoplasmic reticulum membrane {ECO:0000250|UniProtKB:P13569}; Multi-pass membrane protein |
| GO:0005886 plasma membrane | IEA GO_REF:0000120 | ACCEPT | Summary: Automated annotation capturing primary membrane localization. Reason: CFTR functions as a membrane chloride channel. Supporting Evidence: UniProtKB:P26361 Cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:22265409}; Multi-pass |
| GO:0006811 monoatomic ion transport | IEA GO_REF:0000120 | KEEP AS NON CORE | Summary: This broad parent annotation is supported by Cftr-mediated chloride conductance but is non-core because chloride transmembrane transport captures the process more precisely. Reason: The term is correct by the True Path Rule but less informative than chloride transmembrane transport. Supporting Evidence: UniProtKB:P26361 Mediates the transport of chloride ions across the cell membrane (PubMed:20231442, PubMed:22265409). |
| GO:0006821 chloride transport | IEA GO_REF:0000120 | ACCEPT | Summary: Automated annotation for CFTR-mediated chloride transport. Reason: CFTR mediates chloride ion transport across epithelial membranes. Supporting Evidence: UniProtKB:P26361 Mediates the transport of chloride ions across the cell membrane (PubMed:20231442, PubMed:22265409). |
| GO:0016020 membrane | IEA GO_REF:0000120 | KEEP AS NON CORE | Summary: General membrane localization annotation for a multi-pass membrane protein. Reason: The plasma membrane/apical membrane terms are more informative; membrane is retained as a broad non-core localization. Supporting Evidence: UniProtKB:P26361 GO; GO:0016020; C:membrane; ISS:UniProtKB. UniProtKB:P26361 Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0016324 apical plasma membrane | IEA GO_REF:0000120 | ACCEPT | Summary: Automated annotation capturing apical membrane localization. Reason: CFTR forms chloride channels at the apical membrane of epithelial cells. Supporting Evidence: PMID:20231442 Here, we establish that CFTR forms protein kinase A (PKA)-activated Cl(-) channels in the apical membrane of principal cells from the cortical collecting duct obtained from mice. |
| GO:0016853 isomerase activity | IEA GO_REF:0000043 | REMOVE | Summary: No evidence supports isomerase activity for CFTR. Reason: CFTR is an ATP-gated anion channel and lacks isomerase catalytic motifs. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:0016887 ATP hydrolysis activity | IEA GO_REF:0000120 | ACCEPT | Summary: Cftr has intrinsic ATPase activity; ATP binding and hydrolysis at its nucleotide-binding domains drive the channel-gating cycle. Reason: Intrinsic ATP hydrolysis is a conserved core biochemical activity coupled directly to Cftr channel gating. Supporting Evidence: UniProtKB:P26361 GO; GO:0016887; F:ATP hydrolysis activity; ISS:UniProtKB. |
| GO:0031901 early endosome membrane | IEA GO_REF:0000044 | KEEP AS NON CORE | Summary: Cftr traffics through early-endosomal membranes during internalization and recycling to the cell surface. Reason: Early-endosome membrane localization reflects trafficking rather than Cftr's core site of action. Supporting Evidence: UniProtKB:P26361 GO; GO:0031901; C:early endosome membrane; IEA:UniProtKB-SubCell. |
| GO:0034220 monoatomic ion transmembrane transport | IEA GO_REF:0000120 | KEEP AS NON CORE | Summary: Cftr mediates monoatomic-ion transmembrane movement through its anion channel; this is broader than the chloride-specific core process. Reason: The term is valid by the True Path Rule but less informative than chloride transmembrane transport. Supporting Evidence: UniProtKB:P26361 Mediates the transport of chloride ions across the cell membrane (PubMed:20231442, PubMed:22265409). |
| GO:0034707 chloride channel complex | IEA GO_REF:0000043 | KEEP AS NON CORE | Summary: Cftr is the pore-forming component of a chloride-channel complex; this keyword-derived localization is compatible but less informative than channel activity. Reason: The complex term is compatible with Cftr biology but is secondary to its specific channel molecular function. Supporting Evidence: UniProtKB:P26361 GO; GO:0034707; C:chloride channel complex; IEA:UniProtKB-KW. |
| GO:0055038 recycling endosome membrane | IEA GO_REF:0000044 | KEEP AS NON CORE | Summary: Cftr enters recycling-endosome membranes during surface internalization and recycling. Reason: Recycling-endosome membrane localization reflects channel trafficking rather than its core functional site. Supporting Evidence: UniProtKB:P26361 GO; GO:0055038; C:recycling endosome membrane; IEA:UniProtKB-SubCell. |
| GO:0055085 transmembrane transport | IEA GO_REF:0000002 | KEEP AS NON CORE | Summary: Cftr conducts anions across membranes; this broad parent is less informative than chloride transmembrane transport. Reason: The term is valid by the True Path Rule but is too broad to represent Cftr's core function. Supporting Evidence: UniProtKB:P26361 Mediates the transport of chloride ions across the cell membrane (PubMed:20231442, PubMed:22265409). |
| GO:0097186 amelogenesis | IEA GO_REF:0000117 | KEEP AS NON CORE | Summary: Mouse Cftr is expressed by ameloblasts, and Cftr loss causes hypomineralized enamel, supporting a non-core role in amelogenesis. Reason: The mouse evidence supports involvement in amelogenesis, but this tissue-specific role is not Cftr's core molecular function. Supporting Evidence: PMID:26403673 ameloblasts express anion exchanger 2 (Ae2a,b), chloride channel Cftr, and amelogenins that can bind protons. |
| GO:0140359 ABC-type transporter activity | IEA GO_REF:0000002 | MARK AS OVER ANNOTATED | Summary: CFTR is an ABC transporter family member but functions as an ATP-gated anion channel rather than an active transporter. Reason: The ABC transporter activity term implies ATP-driven substrate transport, while CFTR primarily gates passive anion flow using ATP binding/hydrolysis. Supporting Evidence: UniProtKB:P26361 Possesses an intrinsic ATPase activity and utilizes ATP to gate its channel; the passive flow of anions through the channel is gated by cycles of ATP binding and hydrolysis by the ATP-binding domains (By similarity). file:mouse/Cftr/Cftr-deep-research-falcon.md CFTR (mouse **Cftr/Abcc7**) is a member of the **ATP-binding cassette (ABC) transporter superfamily (ABCC subfamily)** but is unusual in that it functions primarily as a **regulated anion channel** rather than a classical active transporter. |
| GO:0005515 protein binding | IPI PMID:19878303 Deletion of Phe508 in the first nucleotide-binding domain of... | KEEP AS NON CORE | Summary: CFTR NBD1 binds the chaperone Hsc70; this is a specific protein-protein interaction but not core channel function. Reason: Evidence supports interaction with Hsc70; however, binding is not the primary molecular function of CFTR. Supporting Evidence: PMID:19878303 F508del-murine (m)NBD1 binds Hsc70 with higher affinity |
| GO:0005515 protein binding | IPI PMID:21976599 Participation of the Cl-/HCO(3)- exchangers SLC26A3 and SLC2... | KEEP AS NON CORE | Summary: CFTR participates in protein interactions with SLC26A3/SLC26A6 and SLC9A3R1 in mouse sperm. Reason: Protein interactions are documented but are not the core molecular function compared to channel activity. Supporting Evidence: PMID:21976599 interact between each other and with CFTR. |
| GO:0005737 cytoplasm | IEA GO_REF:0000120 | KEEP AS NON CORE | Summary: Cytoplasmic localization reported in neurons. Reason: Neuronal cytoplasmic localization has been reported, though CFTR is primarily a membrane channel. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md In the spinal cord, CFTR localizes to the cytoplasm of neurons but not glial cells, suggesting specific neuronal functions for the channel[27]. |
| GO:0005769 early endosome | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Cftr is internalized into an early-endosomal recycling compartment en route back to the plasma membrane. Reason: Endosomal localization reflects Cftr trafficking and recycling rather than its core site of action. Supporting Evidence: UniProtKB:P26361 GO; GO:0005769; C:early endosome; ISS:UniProtKB. |
| GO:0005829 cytosol | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: CFTR is a polytopic membrane protein, but its large cytosolic regulatory and nucleotide-binding regions do face the cytosol, so this is an imprecise parent rather than a wrong compartment. Reason: Aligned with the IBA row for the same term. Mouse Cftr carries its own curated IDA cytosol annotation (PMID:24885604), and cytosol is not mutually exclusive with CFTR's apical membrane location the way nucleus is with cytoplasm. Per the IBA review project's localization rule an adjacent or subsuming compartment is not grounds for flagging, so this is retained as non-core - uninformative about the functional compartment, which is the apical membrane, but not an error. Supporting Evidence: UniProtKB:P26361 Apical cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:21884936}; Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0009986 cell surface | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Cftr is a multi-pass cell-surface membrane protein in epithelial cells. Reason: Cell-surface localization is valid but less specific than apical plasma membrane. Supporting Evidence: UniProtKB:P26361 Cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:22265409}; Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0015106 bicarbonate transmembrane transporter activity | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: CFTR is permeable to bicarbonate and contributes to epithelial HCO3- conductance, supporting a bicarbonate transmembrane permeation role although chloride conduction is the core function. Reason: CFTR conducts bicarbonate as an anion-selective channel, but this is secondary to its chloride channel function. Supporting Evidence: UniProtKB:P26361 GO; GO:0015106; F:bicarbonate transmembrane transporter activity; IMP:UniProtKB. file:mouse/Cftr/Cftr-deep-research-falcon.md CFTR is described as an anion-selective channel conducting **chloride and bicarbonate** across apical epithelial membranes. |
| GO:0015701 bicarbonate transport | IEA GO_REF:0000120 | KEEP AS NON CORE | Summary: Cftr conducts bicarbonate and contributes to epithelial bicarbonate transport, secondary to its core chloride-channel role. Reason: Bicarbonate transport is supported but secondary to Cftr's principal chloride-transport role. Supporting Evidence: UniProtKB:P26361 GO; GO:0015701; P:bicarbonate transport; ISS:UniProtKB. |
| GO:0019869 chloride channel inhibitor activity | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: This ortholog-transferred annotation reflects experimentally demonstrated human CFTR inhibition of TMEM16A/ANO1 chloride-channel currents; the regulatory activity is plausible but non-core in mouse. Reason: Human experimental evidence supports the transferred activity, but regulation of another chloride channel is secondary to Cftr's own channel function. Supporting Evidence: UniProtKB:P26361 GO; GO:0019869; F:chloride channel inhibitor activity; ISS:UniProtKB. |
| GO:0019899 enzyme binding | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: CFTR participates in multiprotein interaction hubs; enzyme-binding term is generic. Reason: CFTR interacts with multiple regulatory partners, but enzyme-specific binding is not well defined. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md Other protein interactors implicated through various experimental approaches include scaffolding proteins, kinases, phosphatases, and cytoskeletal elements, collectively suggesting that CFTR functions as a central hub in integrated regulatory complexes that coordinate multiple aspects of epithelial cell ion transport and signaling[23][50]. |
| GO:0030165 PDZ domain binding | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: NHERF1 PDZ domains bind the CFTR C-terminus. Reason: PDZ-mediated interactions modulate CFTR trafficking and gating. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md The pathway selection appears to involve interactions with multiple cytoplasmic factors including NHERF1 (sodium/hydrogen exchanger regulatory factor 1), which contains PDZ domains that recognize and bind CFTR's C-terminal PDZ-binding motif[56][59]. |
| GO:0032991 protein-containing complex | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: CFTR assembles into membrane protein complexes with multiple partners. Reason: CFTR-containing complexes coordinate epithelial ion transport. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md These CFTR-containing membrane clusters include binding partners such as the epithelial sodium channel (ENaC), various solute carriers, NHERF1, and calmodulin, creating multifunctional signaling and transport complexes that coordinately regulate epithelial ion homeostasis[23]. |
| GO:0034976 response to endoplasmic reticulum stress | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Endoplasmic-reticulum stress can trigger GORASP2-dependent unconventional trafficking of core-glycosylated Cftr to the cell surface, supporting a context-specific stress response. Reason: The stress response is experimentally grounded but context-specific and not a core Cftr function. Supporting Evidence: UniProtKB:P26361 ER stress induces GORASP2-mediated unconventional (ER/Golgi-independent) trafficking of core-glycosylated CFTR to cell membrane (PubMed:21884936). |
| GO:0035377 transepithelial water transport | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Cftr-mediated epithelial anion movement drives transepithelial water transport indirectly through osmotic coupling. Reason: Water transport is a physiological consequence of Cftr ion conductance rather than a direct molecular function. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:0042802 identical protein binding | IEA GO_REF:0000107 | MARK AS OVER ANNOTATED | Summary: CFTR monomers can be cross-linked within a dimeric channel complex. Reason: Evidence supports CFTR dimeric complexes, but the term is generic. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md The PDZ domain-containing proteins NHERF1 (NaβΊ/HβΊ exchanger regulatory factor-1) and CAP70 bind to the C-terminal PDZ-binding motif of CFTR and directly modulate channel gating through bivalent interactions that cross-link the C-terminal tails of CFTR monomers within a dimeric channel complex[56][59]. |
| GO:0050891 multicellular organismal-level water homeostasis | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Cftr-dependent epithelial ion and water transport contributes to organismal fluid homeostasis as a downstream, non-core role. Reason: Organismal water homeostasis is a downstream consequence of epithelial anion transport, not Cftr's core molecular function. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:0051087 protein-folding chaperone binding | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: CFTR engages chaperone machinery during folding. Reason: Cytosolic chaperones monitor CFTR during biogenesis. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md the emerging polypeptide chain is monitored by cytosolic chaperones (Hsp70 and its co-chaperone Hdj-2) that facilitate proper domain assembly and simultaneously monitor for folding errors that would trigger degradation[41]. |
| GO:0055037 recycling endosome | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Cftr is internalized from the cell surface into a recycling-endosome compartment and recycled back to the plasma membrane. Reason: Recycling-endosome localization reflects channel trafficking rather than its core functional site. Supporting Evidence: UniProtKB:P26361 The channel is internalized from the cell surface into an endosomal recycling compartment, from where it is recycled to the cell membrane. |
| GO:0071889 14-3-3 protein binding | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: 14-3-3 proteins bind phosphorylated CFTR. Reason: 14-3-3 binding modulates CFTR trafficking and activity. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md The 14-3-3 protein family members interact with phosphorylated segments of the CFTR R domain and promote CFTR trafficking to the plasma membrane and enhance channel activity[18][50]. |
| GO:0106138 Sec61 translocon complex binding | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: CFTR insertion into the ER uses the translocon. Reason: Co-translational insertion involves the ER translocon machinery. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md Co-translational insertion of nascent CFTR into the endoplasmic reticulum is directed by an N-terminal signal sequence recognized by the signal recognition particle, which escorts the ribosome to the ER translocon[41]. |
| GO:1902476 chloride transmembrane transport | IEA GO_REF:0000107 | ACCEPT | Summary: Cftr directly mediates chloride movement across epithelial membranes, a core physiological process. Reason: Chloride transmembrane transport is a direct, conserved core process mediated by Cftr. Supporting Evidence: UniProtKB:P26361 GO; GO:1902476; P:chloride transmembrane transport; IDA:UniProtKB. |
| GO:1904322 cellular response to forskolin | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Forskolin elevates cAMP and modulates CFTR activity. Reason: Forskolin-dependent cAMP signaling affects CFTR activation. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md Sequential treatment of cells first with thapsigargin (to release intracellular calcium stores) followed by forskolin (to elevate cAMP) results in calmodulin-mediated activation followed by PKA-mediated additional activation, with the two effects appearing additive[20]. file:mouse/Cftr/Cftr-deep-research-falcon.md Mouse-specific evidence described includes **direct CFTRβAC6 interaction in mouse intestinal mucosa/colon epithelial cells** and failure of forskolin-induced swelling in intestinal organoids derived from **AC6-deficient mice**, supporting AC6's role in CFTR-dependent secretion. |
| GO:0042802 identical protein binding | ISO GO_REF:0000119 | MARK AS OVER ANNOTATED | Summary: Evidence for multimeric or cross-linked CFTR complexes does not justify retaining the generic identical-protein-binding term as a specific core function. Reason: The generic binding term obscures the relevant channel complex and adds no informative molecular function. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md The PDZ domain-containing proteins NHERF1 (NaβΊ/HβΊ exchanger regulatory factor-1) and CAP70 bind to the C-terminal PDZ-binding motif of CFTR and directly modulate channel gating through bivalent interactions that cross-link the C-terminal tails of CFTR monomers within a dimeric channel complex[56][59]. |
| GO:0005254 chloride channel activity | ISO GO_REF:0000119 | ACCEPT | Summary: Cftr forms a chloride-selective ion channel at the plasma membrane. Reason: This is a direct, conserved core molecular function of Cftr. Supporting Evidence: UniProtKB:P26361 GO; GO:0005254; F:chloride channel activity; IDA:UniProtKB. |
| GO:0005260 intracellularly ATP-gated chloride channel activity | ISO GO_REF:0000119 | ACCEPT | Summary: ATP binding and hydrolysis at the Cftr nucleotide-binding domains gate its chloride channel, directly supporting this specific molecular function. Reason: ATP-dependent gating is the most specific representation of Cftr's core channel activity. Supporting Evidence: UniProtKB:P26361 GO; GO:0005260; F:intracellularly ATP-gated chloride channel activity; ISS:UniProtKB. |
| GO:0005634 nucleus | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: Orthology transfer reports a context-specific nuclear Cftr pool; this localization is peripheral to its plasma-membrane channel function. Reason: The transferred nuclear localization is context-specific and not part of Cftr's core membrane-channel role. Supporting Evidence: UniProtKB:P26361 Nucleus {ECO:0000250|UniProtKB:P34158}. |
| GO:0005737 cytoplasm | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Cytoplasmic localization reported in neurons. Reason: Neuronal cytoplasmic localization has been reported, though CFTR is primarily a membrane channel. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md In the spinal cord, CFTR localizes to the cytoplasm of neurons but not glial cells, suggesting specific neuronal functions for the channel[27]. |
| GO:0005769 early endosome | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: Cftr is internalized into an early-endosomal recycling compartment en route back to the plasma membrane. Reason: Endosomal localization reflects Cftr trafficking and recycling rather than its core site of action. Supporting Evidence: UniProtKB:P26361 GO; GO:0005769; C:early endosome; ISS:UniProtKB. |
| GO:0005769 early endosome | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Cftr is internalized into an early-endosomal recycling compartment en route back to the plasma membrane. Reason: Endosomal localization reflects Cftr trafficking and recycling rather than its core site of action. Supporting Evidence: UniProtKB:P26361 GO; GO:0005769; C:early endosome; ISS:UniProtKB. |
| GO:0005789 endoplasmic reticulum membrane | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Endoplasmic-reticulum membrane localization reflects cotranslational insertion, folding, and quality control during Cftr biogenesis. Reason: ER membrane residence is a biogenesis and quality-control intermediate, not Cftr's principal functional localization. Supporting Evidence: UniProtKB:P26361 Endoplasmic reticulum membrane {ECO:0000250|UniProtKB:P13569}; Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0005829 cytosol | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: CFTR is a polytopic membrane protein, but its large cytosolic regulatory and nucleotide-binding regions do face the cytosol, so this is an imprecise parent rather than a wrong compartment. Reason: Aligned with the IBA and IEA rows for the same term. The ortholog transfer is not the problem - mouse Cftr has its own curated IDA cytosol annotation (PMID:24885604), so the term is imprecise rather than wrong. Retained as non-core because the functionally informative location is the apical plasma membrane. Supporting Evidence: UniProtKB:P26361 Apical cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:21884936}; Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0005886 plasma membrane | ISO GO_REF:0000119 | ACCEPT | Summary: Cftr is a multi-pass plasma-membrane channel, especially at apical epithelial membranes. Reason: The plasma membrane is a core functional localization where Cftr conducts anions. Supporting Evidence: UniProtKB:P26361 GO; GO:0005886; C:plasma membrane; IDA:UniProtKB. |
| GO:0005902 microvillus | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: Apical membrane localization suggests possible microvillar association. Reason: Evidence supports apical membrane localization; microvillus-specific localization is not well defined. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md CFTR is predominantly localized to the apical plasma membrane of polarized epithelial cells, a location critical for its functions in transepithelial ion transport and fluid secretion[6][8][11][38]. |
| GO:0006821 chloride transport | ISO GO_REF:0000096 | ACCEPT | Summary: Cftr directly mediates chloride transport across epithelial membranes. Reason: Chloride transport is a direct, core physiological role of Cftr. Supporting Evidence: UniProtKB:P26361 GO; GO:0006821; P:chloride transport; IGI:MGI. |
| GO:0006833 water transport | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: Cftr affects water transport indirectly by driving epithelial ion gradients; it is not itself a water channel. Reason: Water movement is an indirect consequence of Cftr-mediated anion transport, so it is valid but non-core. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:0009410 response to xenobiotic stimulus | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: No direct evidence for xenobiotic response; CFTR is primarily an epithelial ion channel. Reason: CFTR's established role is in epithelial ion and water transport. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:0009986 cell surface | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Cftr is a multi-pass cell-surface membrane protein in epithelial cells. Reason: Cell-surface localization is valid but less specific than apical plasma membrane. Supporting Evidence: UniProtKB:P26361 Cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:22265409}; Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0015106 bicarbonate transmembrane transporter activity | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Cftr is permeable to bicarbonate and supports bicarbonate conductance as a secondary anion-channel function. Reason: Bicarbonate conductance is supported but secondary to Cftr's principal chloride-channel function. Supporting Evidence: UniProtKB:P26361 GO; GO:0015106; F:bicarbonate transmembrane transporter activity; IMP:UniProtKB. |
| GO:0015701 bicarbonate transport | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: Cftr conducts bicarbonate and contributes to epithelial bicarbonate transport, secondary to its core chloride-channel role. Reason: Bicarbonate transport is supported but secondary to Cftr's principal chloride-transport role. Supporting Evidence: UniProtKB:P26361 GO; GO:0015701; P:bicarbonate transport; ISS:UniProtKB. |
| GO:0015701 bicarbonate transport | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Cftr conducts bicarbonate and contributes to epithelial bicarbonate transport, secondary to its core chloride-channel role. Reason: Bicarbonate transport is supported but secondary to Cftr's principal chloride-transport role. Supporting Evidence: UniProtKB:P26361 GO; GO:0015701; P:bicarbonate transport; ISS:UniProtKB. |
| GO:0016020 membrane | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Cftr is an integral multi-pass membrane protein; this broad term is less informative than plasma-membrane and apical-plasma-membrane terms. Reason: The broad membrane term is valid but does not identify Cftr's core apical plasma-membrane localization. Supporting Evidence: UniProtKB:P26361 GO; GO:0016020; C:membrane; ISS:UniProtKB. |
| GO:0016323 basolateral plasma membrane | ISO GO_REF:0000096 | MARK AS OVER ANNOTATED | Summary: Basolateral localization is not supported by primary CFTR localization evidence. Reason: CFTR is primarily documented at the apical membrane in epithelial cells; basolateral localization appears over-annotated. Supporting Evidence: UniProtKB:P26361 Apical cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:21884936}; Multi-pass |
| GO:0016324 apical plasma membrane | ISO GO_REF:0000096 | ACCEPT | Summary: Cftr localizes to the apical plasma membrane of polarized epithelia, its principal functional site. Reason: The apical plasma membrane is a core localization for epithelial Cftr channel activity. Supporting Evidence: UniProtKB:P26361 Apical cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:21884936}; Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0016324 apical plasma membrane | ISO GO_REF:0000119 | ACCEPT | Summary: Cftr localizes to the apical plasma membrane of polarized epithelia, its principal functional site. Reason: The apical plasma membrane is a core localization for epithelial Cftr channel activity. Supporting Evidence: UniProtKB:P26361 Apical cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:21884936}; Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0016887 ATP hydrolysis activity | ISO GO_REF:0000119 | ACCEPT | Summary: Cftr has intrinsic ATPase activity; ATP binding and hydrolysis at its nucleotide-binding domains drive the channel-gating cycle. Reason: Intrinsic ATP hydrolysis is a conserved core biochemical activity coupled directly to Cftr channel gating. Supporting Evidence: UniProtKB:P26361 GO; GO:0016887; F:ATP hydrolysis activity; ISS:UniProtKB. |
| GO:0019869 chloride channel inhibitor activity | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: This ortholog-transferred annotation reflects experimentally demonstrated human CFTR inhibition of TMEM16A/ANO1 chloride-channel currents; the regulatory activity is plausible but non-core in mouse. Reason: Human experimental evidence supports the transferred activity, but regulation of another chloride channel is secondary to Cftr's own channel function. Supporting Evidence: UniProtKB:P26361 GO; GO:0019869; F:chloride channel inhibitor activity; ISS:UniProtKB. |
| GO:0019899 enzyme binding | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: CFTR participates in multiprotein interaction hubs; enzyme-binding term is generic. Reason: CFTR interacts with multiple regulatory partners, but enzyme-specific binding is not well defined. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md Other protein interactors implicated through various experimental approaches include scaffolding proteins, kinases, phosphatases, and cytoskeletal elements, collectively suggesting that CFTR functions as a central hub in integrated regulatory complexes that coordinate multiple aspects of epithelial cell ion transport and signaling[23][50]. |
| GO:0030165 PDZ domain binding | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: NHERF1 PDZ domains bind the CFTR C-terminus. Reason: PDZ-mediated interactions modulate CFTR trafficking and gating. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md The pathway selection appears to involve interactions with multiple cytoplasmic factors including NHERF1 (sodium/hydrogen exchanger regulatory factor 1), which contains PDZ domains that recognize and bind CFTR's C-terminal PDZ-binding motif[56][59]. |
| GO:0030321 transepithelial chloride transport | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: CFTR mediates transepithelial chloride secretion across epithelial monolayers. Reason: CFTR supports transepithelial chloride transport in epithelial tissues. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md The primary physiological function of CFTR is to mediate transepithelial secretion of chloride and bicarbonate ions across epithelial cell monolayers, driving osmotic water flow and thereby regulating the volume and composition of epithelial surface liquid[1][22][38]. file:mouse/Cftr/Cftr-deep-research-falcon.md **HCO3β** supply/handling involves Na+-coupled transporters (NBCe1/NBCn1) and luminal/basolateral exchangers including **SLC26A3 (DRA)** and **SLC26A6 (PAT-1)**, functionally integrated with CFTR. |
| GO:0030324 lung development | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: CFTR supports airway epithelial ion transport; developmental role is not established. Reason: Evidence supports respiratory epithelial function rather than lung development per se. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md In the respiratory tract, CFTR in the apical membrane of airway epithelial cells creates a driving force for sodium ion entry through the paracellular pathway, with water following osmotically through aquaporin water channels[22][38]. |
| GO:0030425 dendrite | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: Neuronal expression reported; dendritic localization not established. Reason: CFTR is expressed in neurons, but dendrite-specific localization is not documented. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md Neurons and glia in the central and peripheral nervous systems express CFTR, with particular abundance in the hypothalamus[27]. |
| GO:0032991 protein-containing complex | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: CFTR assembles into membrane protein complexes with multiple partners. Reason: CFTR-containing complexes coordinate epithelial ion transport. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md These CFTR-containing membrane clusters include binding partners such as the epithelial sodium channel (ENaC), various solute carriers, NHERF1, and calmodulin, creating multifunctional signaling and transport complexes that coordinately regulate epithelial ion homeostasis[23]. |
| GO:0033005 positive regulation of mast cell activation | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: CFTR is expressed in immune cells; mast cell-specific activation is not established. Reason: Evidence for immune cell expression does not directly support mast cell activation. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md CFTR is expressed in immune cells including macrophages and neutrophils, where it regulates bacterial killing and autophagy[49]. |
| GO:0034976 response to endoplasmic reticulum stress | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Endoplasmic-reticulum stress can trigger GORASP2-dependent unconventional trafficking of core-glycosylated Cftr to the cell surface, supporting a context-specific stress response. Reason: The stress response is experimentally grounded but context-specific and not a core Cftr function. Supporting Evidence: UniProtKB:P26361 ER stress induces GORASP2-mediated unconventional (ER/Golgi-independent) trafficking of core-glycosylated CFTR to cell membrane (PubMed:21884936). |
| GO:0035377 transepithelial water transport | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Cftr-mediated epithelial anion movement drives transepithelial water transport indirectly through osmotic coupling. Reason: Water transport is a physiological consequence of Cftr ion conductance rather than a direct molecular function. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:0035725 sodium ion transmembrane transport | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: CFTR regulates ENaC-mediated sodium transport in epithelia. Reason: CFTR modulates sodium transport indirectly via ENaC. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md The epithelial sodium channel (ENaC) function is negatively regulated by CFTR activity in airway epithelial cells; activation of CFTR through the cAMP pathway results in inhibition of ENaC-mediated sodium transport[29][39]. |
| GO:0042311 vasodilation | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: No direct evidence for vasodilation; CFTR primarily regulates epithelial ion and water transport. Reason: CFTR's established role is epithelial ion and water transport. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:0043025 neuronal cell body | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: Neuronal expression reported; cell body localization not established. Reason: CFTR is expressed in neurons, but cell body-specific localization is not documented. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md Neurons and glia in the central and peripheral nervous systems express CFTR, with particular abundance in the hypothalamus[27]. |
| GO:0050891 multicellular organismal-level water homeostasis | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Cftr-dependent epithelial ion and water transport contributes to organismal fluid homeostasis as a downstream, non-core role. Reason: Organismal water homeostasis is a downstream consequence of epithelial anion transport, not Cftr's core molecular function. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:0051087 protein-folding chaperone binding | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: CFTR engages chaperone machinery during folding. Reason: Cytosolic chaperones monitor CFTR during biogenesis. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md the emerging polypeptide chain is monitored by cytosolic chaperones (Hsp70 and its co-chaperone Hdj-2) that facilitate proper domain assembly and simultaneously monitor for folding errors that would trigger degradation[41]. |
| GO:0055037 recycling endosome | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Cftr is internalized from the cell surface into a recycling-endosome compartment and recycled back to the plasma membrane. Reason: Recycling-endosome localization reflects channel trafficking rather than its core functional site. Supporting Evidence: UniProtKB:P26361 The channel is internalized from the cell surface into an endosomal recycling compartment, from where it is recycled to the cell membrane. |
| GO:0070166 enamel mineralization | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: Cftr-null mice form hypomineralized enamel, supporting a non-core role in enamel mineralization. Reason: The mouse phenotype supports this developmental role, but it is tissue-specific and downstream of Cftr ion transport. Supporting Evidence: PMID:26403673 Exposure to fluoride or null mutation of Cftr, Ae2a,b, or Amelx each results in formation of hypomineralized enamel. |
| GO:0071889 14-3-3 protein binding | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: 14-3-3 proteins bind phosphorylated CFTR. Reason: 14-3-3 binding modulates CFTR trafficking and activity. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md The 14-3-3 protein family members interact with phosphorylated segments of the CFTR R domain and promote CFTR trafficking to the plasma membrane and enhance channel activity[18][50]. |
| GO:0106138 Sec61 translocon complex binding | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: CFTR insertion into the ER uses the translocon. Reason: Co-translational insertion involves the ER translocon machinery. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md Co-translational insertion of nascent CFTR into the endoplasmic reticulum is directed by an N-terminal signal sequence recognized by the signal recognition particle, which escorts the ribosome to the ER translocon[41]. |
| GO:1902476 chloride transmembrane transport | ISO GO_REF:0000119 | ACCEPT | Summary: Cftr directly mediates chloride movement across epithelial membranes, a core physiological process. Reason: Chloride transmembrane transport is a direct, conserved core process mediated by Cftr. Supporting Evidence: UniProtKB:P26361 GO; GO:1902476; P:chloride transmembrane transport; IDA:UniProtKB. |
| GO:1904322 cellular response to forskolin | ISO GO_REF:0000119 | KEEP AS NON CORE | Summary: Forskolin elevates cAMP and modulates CFTR activity. Reason: Forskolin-dependent cAMP signaling affects CFTR activation. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md Sequential treatment of cells first with thapsigargin (to release intracellular calcium stores) followed by forskolin (to elevate cAMP) results in calmodulin-mediated activation followed by PKA-mediated additional activation, with the two effects appearing additive[20]. |
| GO:1904446 positive regulation of establishment of Sertoli cell barrier | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: CFTR products are detected in Sertoli cells; barrier role is not established. Reason: Sertoli cell context is noted, but barrier establishment evidence is limited. Supporting Evidence: UniProtKB:P26361 In Sertoli cells, a processed product is detected in the nucleus. |
| GO:1905460 negative regulation of vascular associated smooth muscle cell apoptotic process | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: No direct evidence for vascular smooth muscle apoptosis regulation. Reason: CFTR's established role is epithelial ion and water transport. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:2000077 negative regulation of type B pancreatic cell development | ISO GO_REF:0000096 | KEEP AS NON CORE | Summary: CFTR supports pancreatic duct ion transport; beta-cell development role is not established. Reason: Evidence supports pancreatic duct function rather than beta-cell development. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md In the pancreatic ducting system, CFTR-mediated chloride secretion is functionally coupled with bicarbonate secretion through coordinated activity of CFTR and chloride-bicarbonate exchangers (SLC26A6), enabling the production of alkaline, bicarbonate-rich pancreatic juice that neutralizes acidic chyme and activates pancreatic digestive enzymes[44][47]. |
| GO:0070175 positive regulation of enamel mineralization | IDA PMID:26403673 Ameloblast Modulation and Transport of Clβ», NaβΊ, and KβΊ duri... | KEEP AS NON CORE | Summary: Cftr loss is associated with hypomineralized enamel, supporting a role in enamel mineralization during amelogenesis. Reason: Evidence links Cftr to enamel mineralization but this is not the core function of CFTR. Supporting Evidence: PMID:26403673 null mutation of Cftr, Ae2a,b, or Amelx each results in formation of hypomineralized enamel. |
| GO:0097186 amelogenesis | IDA PMID:26403673 Ameloblast Modulation and Transport of Clβ», NaβΊ, and KβΊ duri... | KEEP AS NON CORE | Summary: Cftr is expressed in ameloblasts during enamel formation. Reason: Supports a role in amelogenesis but is not core CFTR function. Supporting Evidence: PMID:26403673 ameloblasts express anion exchanger 2 (Ae2a,b), chloride channel Cftr |
| GO:1902476 chloride transmembrane transport | IDA PMID:26403673 Ameloblast Modulation and Transport of Clβ», NaβΊ, and KβΊ duri... | ACCEPT | Summary: Cftr is a chloride channel expressed in ameloblasts. Reason: CFTR mediates chloride movement across membranes. Supporting Evidence: PMID:26403673 ameloblasts express anion exchanger 2 (Ae2a,b), chloride channel Cftr |
| GO:0016887 ATP hydrolysis activity | ISS GO_REF:0000024 | ACCEPT | Summary: Cftr has intrinsic ATPase activity; ATP binding and hydrolysis at its nucleotide-binding domains drive the channel-gating cycle. Reason: Intrinsic ATP hydrolysis is a conserved core biochemical activity coupled directly to Cftr channel gating. Supporting Evidence: UniProtKB:P26361 GO; GO:0016887; F:ATP hydrolysis activity; ISS:UniProtKB. |
| GO:0016324 apical plasma membrane | IDA PMID:21884936 Rescue of ΞF508-CFTR trafficking via a GRASP-dependent uncon... | ACCEPT | Summary: CFTR surface expression can be rescued via unconventional secretion. Reason: CFTR is a plasma membrane protein with regulated surface trafficking. Supporting Evidence: PMID:21884936 ΞF508-CFTR surface expression can be rescued in vitro and in vivo by directing it to an unconventional GRASP-dependent secretion pathway. |
| GO:0034976 response to endoplasmic reticulum stress | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Endoplasmic-reticulum stress can trigger GORASP2-dependent unconventional trafficking of core-glycosylated Cftr to the cell surface, supporting a context-specific stress response. Reason: The stress response is experimentally grounded but context-specific and not a core Cftr function. Supporting Evidence: UniProtKB:P26361 ER stress induces GORASP2-mediated unconventional (ER/Golgi-independent) trafficking of core-glycosylated CFTR to cell membrane (PubMed:21884936). |
| GO:0005634 nucleus | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Orthology transfer reports a context-specific nuclear Cftr pool; this localization is peripheral to its plasma-membrane channel function. Reason: The transferred nuclear localization is context-specific and not part of Cftr's core membrane-channel role. Supporting Evidence: UniProtKB:P26361 Nucleus {ECO:0000250|UniProtKB:P34158}. |
| GO:0005254 chloride channel activity | IDA PMID:20231442 Mouse cystic fibrosis transmembrane conductance regulator fo... | ACCEPT | Summary: CFTR forms PKA-activated chloride channels at the apical membrane. Reason: Direct electrophysiological evidence supports CFTR chloride channel activity. Supporting Evidence: PMID:20231442 CFTR forms protein kinase A (PKA)-activated Cl(-) channels in the apical membrane of principal cells from the cortical collecting duct obtained from mice. |
| GO:0015106 bicarbonate transmembrane transporter activity | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Cftr is permeable to bicarbonate and supports bicarbonate conductance as a secondary anion-channel function. Reason: Bicarbonate conductance is supported but secondary to Cftr's principal chloride-channel function. Supporting Evidence: UniProtKB:P26361 GO; GO:0015106; F:bicarbonate transmembrane transporter activity; IMP:UniProtKB. |
| GO:0015701 bicarbonate transport | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Cftr conducts bicarbonate and contributes to epithelial bicarbonate transport, secondary to its core chloride-channel role. Reason: Bicarbonate transport is supported but secondary to Cftr's principal chloride-transport role. Supporting Evidence: UniProtKB:P26361 GO; GO:0015701; P:bicarbonate transport; ISS:UniProtKB. |
| GO:0035377 transepithelial water transport | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Cftr-mediated epithelial anion movement drives transepithelial water transport indirectly through osmotic coupling. Reason: Water transport is a physiological consequence of Cftr ion conductance rather than a direct molecular function. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:0050891 multicellular organismal-level water homeostasis | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Cftr-dependent epithelial ion and water transport contributes to organismal fluid homeostasis as a downstream, non-core role. Reason: Organismal water homeostasis is a downstream consequence of epithelial anion transport, not Cftr's core molecular function. Supporting Evidence: UniProtKB:P26361 regulation of epithelial ion and water transport and fluid homeostasis |
| GO:1902476 chloride transmembrane transport | IDA PMID:20231442 Mouse cystic fibrosis transmembrane conductance regulator fo... | ACCEPT | Summary: Apical CFTR chloride channels mediate chloride transport across the membrane. Reason: CFTR channel activity provides chloride transmembrane transport. Supporting Evidence: PMID:20231442 CFTR forms protein kinase A (PKA)-activated Cl(-) channels in the apical membrane of principal cells from the cortical collecting duct obtained from mice. |
| GO:1904322 cellular response to forskolin | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Forskolin elevates cAMP and modulates CFTR activity. Reason: Forskolin-dependent cAMP signaling affects CFTR activation. Supporting Evidence: file:mouse/Cftr/Cftr-deep-research-perplexity.md Sequential treatment of cells first with thapsigargin (to release intracellular calcium stores) followed by forskolin (to elevate cAMP) results in calmodulin-mediated activation followed by PKA-mediated additional activation, with the two effects appearing additive[20]. |
| GO:0005260 intracellularly ATP-gated chloride channel activity | ISS GO_REF:0000024 | ACCEPT | Summary: ATP binding and hydrolysis at the Cftr nucleotide-binding domains gate its chloride channel, directly supporting this specific molecular function. Reason: ATP-dependent gating is the most specific representation of Cftr's core channel activity. Supporting Evidence: UniProtKB:P26361 GO; GO:0005260; F:intracellularly ATP-gated chloride channel activity; ISS:UniProtKB. |
| GO:0005789 endoplasmic reticulum membrane | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Endoplasmic-reticulum membrane localization reflects cotranslational insertion, folding, and quality control during Cftr biogenesis. Reason: ER membrane residence is a biogenesis and quality-control intermediate, not Cftr's principal functional localization. Supporting Evidence: UniProtKB:P26361 Endoplasmic reticulum membrane {ECO:0000250|UniProtKB:P13569}; Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0016020 membrane | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Cftr is an integral multi-pass membrane protein; this broad term is less informative than plasma-membrane and apical-plasma-membrane terms. Reason: The broad membrane term is valid but does not identify Cftr's core apical plasma-membrane localization. Supporting Evidence: UniProtKB:P26361 GO; GO:0016020; C:membrane; ISS:UniProtKB. |
| GO:1902476 chloride transmembrane transport | ISS GO_REF:0000024 | ACCEPT | Summary: Cftr directly mediates chloride movement across epithelial membranes, a core physiological process. Reason: Chloride transmembrane transport is a direct, conserved core process mediated by Cftr. Supporting Evidence: UniProtKB:P26361 GO; GO:1902476; P:chloride transmembrane transport; IDA:UniProtKB. |
| GO:0016324 apical plasma membrane | IDA PMID:16537650 Apical localization of ITPK1 enhances its ability to be a mo... | ACCEPT | Summary: PMID focuses on apical localization of ITPK1 in a CF model; CFTR apical localization is supported by other sources. Reason: CFTR is documented at the apical plasma membrane in epithelial cells, although this PMID does not directly test CFTR localization. Supporting Evidence: UniProtKB:P26361 Apical cell membrane {ECO:0000269|PubMed:20231442, ECO:0000269|PubMed:21884936}; Multi-pass membrane protein {ECO:0000250|UniProtKB:P13569}. |
| GO:0005254 chloride channel activity | IMP PMID:24885604 CFTR and Anoctamin 1 (ANO1) contribute to cAMP amplified exo... | ACCEPT | Summary: CFTR functions as a cAMP-regulated chloride channel in mouse cells. Reason: CFTR is a chloride channel whose activity is regulated by cAMP signaling. Supporting Evidence: PMID:24885604 The cystic fibrosis transmembrane conductance regulator (CFTR) is a cAMP-regulated chloride channel that belongs to the family of ATP-binding cassette (ABC)-transporters [1]. |
| GO:0005829 cytosol | IDA PMID:24885604 CFTR and Anoctamin 1 (ANO1) contribute to cAMP amplified exo... | KEEP AS NON CORE | Summary: Direct experimental cytosol annotation. CFTR's R domain and nucleotide-binding domains face the cytosol, so this is an imprecise parent term rather than a wrong compartment. Reason: Aligned with the IBA, IEA and ISO rows for the same term, and downgraded from MARK_AS_OVER_ANNOTATED - this is the direct experimental observation that grounds them, so flagging it while accepting the propagated copies was inconsistent. A curator recorded cytosol from PMID:24885604, and cytosol is not a compartment that excludes CFTR's apical membrane location the way nucleus excludes cytoplasm. It is kept as non-core because the apical plasma membrane is the informative location, not because the observation is doubted. Supporting Evidence: PMID:24885604 The cystic fibrosis transmembrane conductance regulator (CFTR) is a cAMP-regulated chloride channel that belongs to the family of ATP-binding cassette (ABC)-transporters [1]. |
| GO:0005886 plasma membrane | IDA PMID:24885604 CFTR and Anoctamin 1 (ANO1) contribute to cAMP amplified exo... | ACCEPT | Summary: CFTR is a cAMP-regulated chloride channel localized to the cell membrane. Reason: CFTR is a membrane chloride channel required for epithelial ion transport. Supporting Evidence: PMID:24885604 CFTR is primarily present in epithelial cells in airways, intestine and in cells with exocrine functions. |
| GO:1902476 chloride transmembrane transport | IMP PMID:24885604 CFTR and Anoctamin 1 (ANO1) contribute to cAMP amplified exo... | ACCEPT | Summary: CFTR contributes to epithelial chloride transport. Reason: CFTR-mediated chloride conductance underlies epithelial ion transport. Supporting Evidence: PMID:24885604 In patients with CF the defective chloride transport through CFTR leads to production of thick viscous mucus caused by a disturbed ion and water transport across epithelial membranes. |
| GO:0005515 protein binding | IPI PMID:23542070 Irbit mediates synergy between ca(2+) and cAMP signaling pat... | KEEP AS NON CORE | Summary: Irbit translocates to CFTR at the plasma membrane, indicating protein interaction. Reason: Protein interactions are reported but are not the core molecular function. Supporting Evidence: PMID:23542070 translocation of Irbit to CFTR and Slc26a6 in the plasma membrane |
| GO:0005515 protein binding | IPI PMID:19033647 IRBIT coordinates epithelial fluid and HCO3- secretion by st... | KEEP AS NON CORE | Summary: IRBIT activates luminal CFTR, indicating functional interaction. Reason: Interaction/regulation is documented but is not core channel activity. Supporting Evidence: PMID:19033647 activates both the basolateral pNBC1 and the luminal CFTR |
| GO:0015106 bicarbonate transmembrane transporter activity | IMP PMID:21976599 Participation of the Cl-/HCO(3)- exchangers SLC26A3 and SLC2... | KEEP AS NON CORE | Summary: Study context involves Cl-/HCO3- exchangers and CFTR in sperm capacitation. Reason: CFTR is primarily a chloride channel; bicarbonate transport is context dependent. Supporting Evidence: PMID:21976599 Cl-/HCO(3)- exchangers SLC26A3 and SLC26A6, the Cl- channel CFTR |
| GO:0015108 chloride transmembrane transporter activity | IMP PMID:21976599 Participation of the Cl-/HCO(3)- exchangers SLC26A3 and SLC2... | KEEP AS NON CORE | Summary: CFTR contributes to chloride increases during sperm capacitation. Reason: Evidence supports CFTR involvement in chloride handling in sperm. Supporting Evidence: PMID:21976599 CFTR and SLC26A3 are involved in the [Cl(-)](i) increase induced by db-cAMP in noncapacitated sperm. |
| GO:0048240 sperm capacitation | IMP PMID:21976599 Participation of the Cl-/HCO(3)- exchangers SLC26A3 and SLC2... | KEEP AS NON CORE | Summary: CFTR/SLC26A3 interaction is important for mouse sperm capacitation. Reason: Demonstrates involvement in capacitation but not core CFTR function. Supporting Evidence: PMID:21976599 CFTR/SLC26A3 functional interaction is important for mouse sperm capacitation. |
| GO:0051454 intracellular pH elevation | IMP PMID:21976599 Participation of the Cl-/HCO(3)- exchangers SLC26A3 and SLC2... | KEEP AS NON CORE | Summary: HCO3- and Cl- are essential for capacitation, consistent with pH-related changes during this process. Reason: Evidence is indirect and context-specific. Supporting Evidence: PMID:21976599 Although Cl(-) and HCO(3)(-) are essential for capacitation, the molecular entities responsible for their transport are not fully known. |
| GO:0060081 membrane hyperpolarization | IMP PMID:21976599 Participation of the Cl-/HCO(3)- exchangers SLC26A3 and SLC2... | KEEP AS NON CORE | Summary: Membrane potential hyperpolarizes during sperm capacitation. Reason: Observed in the capacitation context; not core CFTR function. Supporting Evidence: PMID:21976599 During mouse sperm capacitation, the intracellular concentration of Cl(-) ([Cl(-)](i)) increases and membrane potential (Em) hyperpolarizes. |
| GO:0071320 cellular response to cAMP | IDA PMID:21976599 Participation of the Cl-/HCO(3)- exchangers SLC26A3 and SLC2... | KEEP AS NON CORE | Summary: cAMP stimulation affects CFTR-dependent chloride handling in sperm. Reason: Response to cAMP is context-specific in sperm capacitation. Supporting Evidence: PMID:21976599 CFTR and SLC26A3 are involved in the [Cl(-)](i) increase induced by db-cAMP in noncapacitated sperm. |
| GO:0005254 chloride channel activity | ISS GO_REF:0000024 | ACCEPT | Summary: Cftr forms a chloride-selective ion channel at the plasma membrane. Reason: This is a direct, conserved core molecular function of Cftr. Supporting Evidence: UniProtKB:P26361 GO; GO:0005254; F:chloride channel activity; IDA:UniProtKB. |
| GO:0005886 plasma membrane | ISS GO_REF:0000024 | ACCEPT | Summary: Cftr is a multi-pass plasma-membrane channel, especially at apical epithelial membranes. Reason: The plasma membrane is a core functional localization where Cftr conducts anions. Supporting Evidence: UniProtKB:P26361 GO; GO:0005886; C:plasma membrane; IDA:UniProtKB. |
| GO:0019869 chloride channel inhibitor activity | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: This ortholog-transferred annotation reflects experimentally demonstrated human CFTR inhibition of TMEM16A/ANO1 chloride-channel currents; the regulatory activity is plausible but non-core in mouse. Reason: Human experimental evidence supports the transferred activity, but regulation of another chloride channel is secondary to Cftr's own channel function. Supporting Evidence: UniProtKB:P26361 GO; GO:0019869; F:chloride channel inhibitor activity; ISS:UniProtKB. |
| GO:0006821 chloride transport | IGI PMID:19033647 IRBIT coordinates epithelial fluid and HCO3- secretion by st... | ACCEPT | Summary: IRBIT stimulates luminal CFTR to support epithelial anion transport. Reason: Supports CFTR-mediated chloride transport in epithelial secretion. Supporting Evidence: PMID:19033647 activates both the basolateral pNBC1 and the luminal CFTR |
| GO:0005769 early endosome | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Cftr is internalized into an early-endosomal recycling compartment en route back to the plasma membrane. Reason: Endosomal localization reflects Cftr trafficking and recycling rather than its core site of action. Supporting Evidence: UniProtKB:P26361 GO; GO:0005769; C:early endosome; ISS:UniProtKB. |
| GO:0006695 cholesterol biosynthetic process | IMP PMID:17085523 Altered cholesterol homeostasis in cultured and in vivo mode... | KEEP AS NON CORE | Summary: cftr(-/-) mice show increased de novo cholesterol synthesis. Reason: Altered cholesterol biosynthesis is a downstream effect in CF models. Supporting Evidence: PMID:17085523 increased de novo cholesterol synthesis in lung and liver of cftr(-/-) mice compared with controls. |
| GO:0030301 cholesterol transport | IMP PMID:17085523 Altered cholesterol homeostasis in cultured and in vivo mode... | KEEP AS NON CORE | Summary: CF models show impaired intracellular cholesterol movement. Reason: Cholesterol transport alterations are secondary to CFTR defects. Supporting Evidence: PMID:17085523 Impaired intracellular cholesterol movement is predicted to stimulate cholesterol synthesis |
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