{
  "date": "2026-09-20",
  "operation": "verified_input_identity_correction",
  "old_review_id": "Q21992",
  "old_source_id": "Q17370",
  "old_source_gene": "nhr-47 (C24G6.4; WBGene00003637)",
  "old_review_id_identity": "Deleted LARP-1 accession (R144.7; current D5MCN2), not CSR-1",
  "correct_gene": "csr-1 (F20D12.1)",
  "correct_canonical_accession": "H2KZD5",
  "alternative_isoform_accession": "Q27GU1",
  "retired_original_source_assertions": 16,
  "original_author_proposed_rows": 7,
  "replacement_source_assertions": 21,
  "original_files": [
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      "canonical_path": "genes/worm/csr-1/csr-1-ai-review.yaml",
      "archived_path": "genes/worm/csr-1/csr-1-provenance/original-mixed-identity/csr-1-ai-review.yaml.snapshot",
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      "archived_path": "genes/worm/csr-1/csr-1-provenance/original-mixed-identity/csr-1-uniprot.txt",
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      "bytes": 6506
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      "canonical_path": "genes/worm/csr-1/csr-1-goa.tsv",
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      "bytes": 5226
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  "replacement_files": [
    {
      "canonical_path": "genes/worm/csr-1/csr-1-uniprot.txt",
      "fetched_path": "genes/worm/csr-1/csr-1-provenance/isoform-a/genes/worm/csr-1/csr-1-uniprot.txt",
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      "canonical_path": "genes/worm/csr-1/csr-1-goa.tsv",
      "fetched_path": "genes/worm/csr-1/csr-1-provenance/isoform-a/genes/worm/csr-1/csr-1-goa.tsv",
      "sha256": "9bf0c5b56f07ff0e2c62c52db0155effadaf9da143b43b2e5447f662112d79d9",
      "bytes": 6878
    }
  ],
  "source_policy": "Exact official fetch-gene snapshots copied byte-for-byte after separately fetched accession-resolved data; original source files and review archived unchanged. Retired NHR-47 assertions are wrong-input records, not biological rejections of NHR-47 curator annotations.",
  "replacement_review": {
    "canonical_path": "genes/worm/csr-1/csr-1-ai-review.yaml",
    "reviewed_proposal_path": "genes/worm/csr-1/csr-1-provenance/isoform-a/csr-1-proposed-repair.yaml",
    "sha256": "7e9354f92aeb2bac353e28a4228a0cba219d32d917bfcf05d62e5302b75df541"
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  "old_authored_annotation_reconciliation": [
    {
      "term": "GO:0007059",
      "outcome": "Withdrawn: duplicates or is an ancestor/descendant of the corrected source annotations; no new coverage."
    },
    {
      "term": "GO:0016442",
      "outcome": "Withdrawn: duplicates or is an ancestor/descendant of the corrected source annotations; no new coverage."
    },
    {
      "term": "GO:0043186",
      "outcome": "Withdrawn: duplicates or is an ancestor/descendant of the corrected source annotations; no new coverage."
    },
    {
      "term": "GO:0035197",
      "outcome": "Withdrawn: siRNA binding is a descendant of existing source RNA-binding/nucleic-acid-binding annotations; avoid manufacturing redundant coverage. Direct 22G binding remains in the review and core evidence."
    },
    {
      "term": "GO:0060966",
      "outcome": "Retained existing authored regulation claim; strengthened with direct RNA-tethering participation evidence and isoform qualification."
    },
    {
      "term": "GO:0007281",
      "outcome": "Withdrawn: germ-cell-development necessity does not by itself establish a distinct participation assertion beyond the supported RNA-regulatory and chromosome functions."
    },
    {
      "term": "GO:0010628",
      "outcome": "Retained existing authored regulation claim; strengthened with direct RNA-tethering participation evidence and isoform qualification."
    }
  ],
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    "method": "Official ai-gene-review seed-goa --goa exact H2KZD5 fetched GOA --no-fetch-titles, before any manual reviews",
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  "excluded_prediction_artifacts": [
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      "reason": "Historical prediction artifacts retain the deleted Q21992 review identifier and/or nuclear-receptor input architecture associated with the archived NHR-47/Q17370 record. They are not outputs for the canonical CSR-1/H2KZD5 sequence. Existing UNC or other per-term assessments must not be interpreted as canonical CSR-1 evaluations; the files are retained unchanged as historical provenance."
    },
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      "reason": "Historical prediction artifacts retain the deleted Q21992 review identifier and/or nuclear-receptor input architecture associated with the archived NHR-47/Q17370 record. They are not outputs for the canonical CSR-1/H2KZD5 sequence. Existing UNC or other per-term assessments must not be interpreted as canonical CSR-1 evaluations; the files are retained unchanged as historical provenance."
    },
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      "path": "genes/worm/csr-1/csr-1-bioreason-rl-predictions.md",
      "sha256": "975f1da379952a0074bdfd89aebab860a852ba8e55242816f53d812db1e17312",
      "status": "WRONG_INPUT_SEQUENCE",
      "use_for_canonical_csr1_evaluation": false,
      "reason": "Historical prediction artifacts retain the deleted Q21992 review identifier and/or nuclear-receptor input architecture associated with the archived NHR-47/Q17370 record. They are not outputs for the canonical CSR-1/H2KZD5 sequence. Existing UNC or other per-term assessments must not be interpreted as canonical CSR-1 evaluations; the files are retained unchanged as historical provenance."
    }
  ]
}