id: Q09969
gene_symbol: dct-1
product_type: PROTEIN
status: DRAFT
taxon:
  id: NCBITaxon:6239
  label: Caenorhabditis elegans
description: DCT-1 (DAF-16/FOXO controlled germline tumor affecting-1) is the C.
  elegans ortholog of mammalian BNIP3/NIX, functioning as an outer mitochondrial
  membrane (OMM) mitophagy receptor. DCT-1 contains a C-terminal transmembrane 
  domain for OMM localization and a conserved WXXL LIR (LC3-interacting 
  region)-like motif that enables direct binding to LGG-1/Atg8 to recruit 
  autophagosomes to mitochondria. DCT-1 operates in a genetic pathway with 
  PINK-1 and PDR-1/Parkin; under oxidative stress, DCT-1 is ubiquitinated at 
  Lys-26 in a PINK-1-dependent manner. DCT-1 is transcriptionally regulated by 
  DAF-16/FOXO and SKN-1/Nrf2, forming a homeostatic feedback loop that 
  coordinates mitophagy with mitochondrial biogenesis. Loss of dct-1 leads to 
  accumulation of dysfunctional mitochondria, increased ROS, decreased ATP, and 
  shortened lifespan in long-lived mutants. DCT-1 also has ancestral roles in 
  apoptosis, interacting with CED-3 and CED-9, though killing occurs through a 
  BH3- and caspase-independent mechanism.
existing_annotations:
  - term:
      id: GO:0043067
      label: regulation of programmed cell death
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: IBA annotation inferred from phylogenetic analysis. DCT-1/ceBNIP3
        has documented roles in programmed cell death pathways. Early studies 
        showed DCT-1 interacts with CED-9 (Bcl-2 homolog) and CED-3 (caspase) 
        and can initiate apoptosis when overexpressed in mammalian cells 
        (PMID:11114722, PMID:9824163). However, DCT-1 kills through a BH3- and 
        caspase-independent mechanism, and the primary physiological function in
        C. elegans is mitophagy rather than apoptosis.
      action: KEEP_AS_NON_CORE
      reason: While DCT-1 has ancestral apoptosis-related functions inherited 
        from the BNIP3 family, the primary characterized function in C. elegans 
        is as a mitophagy receptor. The apoptotic function appears to be a 
        secondary/ancestral role. IBA annotation is phylogenetically appropriate
        but represents a non-core function.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: ceBNIP3 protein interacts with CED-9 and BCL-XL, but 
            unlike other pro-apoptotic BCL-2 family members, the BH3-like domain
            does not participate in dimerization
        - reference_id: file:worm/dct-1/dct-1-deep-research-falcon.md
          supporting_text: '[DCT-1 has ancestral apoptosis-related functions from
            BNIP3 family, but primary characterized function is mitophagy]'
  - term:
      id: GO:0005741
      label: mitochondrial outer membrane
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: IBA annotation for mitochondrial outer membrane localization. 
        This is strongly supported by direct experimental evidence in C. 
        elegans. DCT-1 contains a C-terminal transmembrane domain that mediates 
        OMM localization (PMID:25896323, PMID:11114722).
      action: ACCEPT
      reason: Core cellular localization for DCT-1 function as a mitophagy 
        receptor. The IBA is consistent with direct IDA evidence showing DCT-1 
        localizes to mitochondria via its transmembrane domain.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: Like BNIP3, the TM domain of ceBNIP3 mediates the 
            localization of the protein to mitochondria and is also necessary 
            for homodimerization and cell death in mammalian cells
        - reference_id: file:worm/dct-1/dct-1-deep-research-falcon.md
          supporting_text: DCT-1 is an integral OMM protein [mitochondrial outer
            membrane]
  - term:
      id: GO:0005634
      label: nucleus
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: IBA annotation for nuclear localization. No direct experimental 
        evidence for nuclear localization of DCT-1 in C. elegans was found in 
        the literature reviewed. The primary localization is to the 
        mitochondrial outer membrane. Some BNIP3 family members in mammals can 
        localize to the nucleus, but this may not apply to DCT-1.
      action: UNDECIDED
      reason: The IBA inference is based on mammalian BNIP3/NIX data where some 
        nuclear localization has been reported. However, all C. elegans 
        experimental data describes mitochondrial localization. Without direct 
        evidence in C. elegans, this annotation cannot be confidently accepted 
        or rejected.
  - term:
      id: GO:0097345
      label: mitochondrial outer membrane permeabilization
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: IBA annotation for mitochondrial outer membrane permeabilization 
        (MOMP). BNIP3 family members in mammals can induce MOMP during 
        apoptosis. DCT-1 in C. elegans interacts with CED-9/Bcl-2 and may 
        influence mitochondrial membrane integrity, but its primary function is 
        in mitophagy rather than MOMP-mediated apoptosis.
      action: KEEP_AS_NON_CORE
      reason: While BNIP3 family proteins can influence MOMP, DCT-1's primary 
        function in C. elegans is as a mitophagy receptor. The MOMP-related 
        function may be an ancestral property but is not the core characterized 
        function. DCT-1 kills through a BH3- and caspase-independent mechanism 
        (PMID:11114722), suggesting the mechanism differs from classical MOMP.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: ceBNIP3 kills mammalian cells by a 
            caspase-independent mechanism. In conclusion, we find that although 
            ceBNIP3 interacts with CED-9 and CED-3 it kills by a BH3- and 
            caspase-independent mechanism
  - term:
      id: GO:0005739
      label: mitochondrion
    evidence_type: IEA
    original_reference_id: GO_REF:0000117
    review:
      summary: IEA annotation from ARBA machine learning. DCT-1 is localized to 
        mitochondria, specifically the outer membrane. This is a broad but 
        correct annotation.
      action: ACCEPT
      reason: Correct general localization. The more specific term 
        (mitochondrial outer membrane, GO:0005741) is also annotated with 
        experimental evidence, so this broader IEA annotation is acceptable as a
        parent term annotation.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: the TM domain of ceBNIP3 mediates the localization of
            the protein to mitochondria
  - term:
      id: GO:0005740
      label: mitochondrial envelope
    evidence_type: IEA
    original_reference_id: GO_REF:0000002
    review:
      summary: IEA annotation from InterPro BNIP3 domain mapping. DCT-1 
        localizes to the mitochondrial outer membrane, which is part of the 
        mitochondrial envelope.
      action: ACCEPT
      reason: Correct annotation at appropriate specificity. The mitochondrial 
        envelope includes the outer membrane where DCT-1 is localized. This is 
        consistent with experimental data.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: the TM domain of ceBNIP3 mediates the localization of
            the protein to mitochondria
  - term:
      id: GO:0005741
      label: mitochondrial outer membrane
    evidence_type: IEA
    original_reference_id: GO_REF:0000044
    review:
      summary: IEA annotation from UniProt subcellular location vocabulary 
        mapping. DCT-1 is localized to the mitochondrial outer membrane as 
        confirmed by direct experimental evidence.
      action: ACCEPT
      reason: Correct annotation supported by direct experimental evidence (IDA 
        from PMID:25896323). The IEA is redundant with the IDA but correctly 
        captures the localization.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: Like BNIP3, the TM domain of ceBNIP3 mediates the 
            localization of the protein to mitochondria
  - term:
      id: GO:0006914
      label: autophagy
    evidence_type: IEA
    original_reference_id: GO_REF:0000043
    review:
      summary: IEA annotation from UniProt keyword mapping (Autophagy keyword). 
        DCT-1 is involved in mitophagy, which is a specific form of autophagy. 
        This is a correct but broad annotation.
      action: ACCEPT
      reason: Correct annotation. Mitophagy (GO:0000423) is a subtype of 
        autophagy, so the parent term annotation is valid. DCT-1 is a key 
        mediator of mitophagy as demonstrated in PMID:25896323.
      supported_by:
        - reference_id: PMID:25896323
          supporting_text: We find that DCT-1 is a key mediator of mitophagy and
            longevity assurance under conditions of stress in C. elegans
  - term:
      id: GO:0006915
      label: apoptotic process
    evidence_type: IEA
    original_reference_id: GO_REF:0000043
    review:
      summary: IEA annotation from UniProt keyword mapping (Apoptosis keyword). 
        DCT-1 has ancestral roles in apoptosis inherited from the BNIP3 family, 
        interacting with CED-3 and CED-9. However, this is not the primary 
        function in C. elegans.
      action: KEEP_AS_NON_CORE
      reason: DCT-1 has documented interactions with apoptosis machinery (CED-3,
        CED-9) and can induce cell death when overexpressed, but kills through a
        BH3- and caspase-independent mechanism. The primary physiological 
        function is mitophagy. This annotation reflects an ancestral/secondary 
        function.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: although ceBNIP3 interacts with CED-9 and CED-3 it 
            kills by a BH3- and caspase-independent mechanism
  - term:
      id: GO:0016020
      label: membrane
    evidence_type: IEA
    original_reference_id: GO_REF:0000002
    review:
      summary: IEA annotation from InterPro domain mapping. DCT-1 is a membrane 
        protein localized to the mitochondrial outer membrane.
      action: ACCEPT
      reason: Correct but very broad annotation. DCT-1 contains a transmembrane 
        domain and is an integral membrane protein. More specific annotations 
        (mitochondrial outer membrane) are also present.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: ceBNIP3 contains a C-terminal transmembrane (TM) 
            domain, a conserved domain (CD) of 19 amino acids, a BCL-2 
            homology-3 (BH3)-like domain and a PEST sequence
  - term:
      id: GO:0042802
      label: identical protein binding
    evidence_type: IEA
    original_reference_id: GO_REF:0000117
    review:
      summary: IEA annotation from ARBA machine learning. DCT-1 forms 
        homodimers, so this annotation is correct and consistent with 
        experimental evidence.
      action: MODIFY
      reason: The annotation is correct - DCT-1 homodimerizes - but the term 
        "identical protein binding" is too general. The more specific term 
        "protein homodimerization activity" (GO:0042803) is already annotated 
        with IDA evidence. This IEA should be replaced with the more specific 
        term.
      proposed_replacement_terms:
        - id: GO:0042803
          label: protein homodimerization activity
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: ceBNIP3 is expressed primarily as a 25 kDa monomer 
            and a 50 kDa homodimer
  - term:
      id: GO:0043065
      label: positive regulation of apoptotic process
    evidence_type: IEA
    original_reference_id: GO_REF:0000002
    review:
      summary: IEA annotation from InterPro BNIP3 domain mapping. BNIP3 family 
        proteins are typically pro-apoptotic. DCT-1 can induce cell death when 
        overexpressed in mammalian cells, but this is not its primary 
        physiological function in C. elegans.
      action: KEEP_AS_NON_CORE
      reason: DCT-1 has pro-apoptotic activity when overexpressed, consistent 
        with BNIP3 family function, but kills through a BH3- and 
        caspase-independent mechanism. The primary in vivo function in C. 
        elegans is mitophagy rather than apoptosis regulation. This is an 
        ancestral/secondary function.
      supported_by:
        - reference_id: PMID:9824163
          supporting_text: ceBNIP3 may be a novel component of the C. elegans 
            apoptosis paradigm and may initiate apoptosis by recruiting CED-3 to
            mitochondria and other cytoplasmic membranes
  - term:
      id: GO:0000423
      label: mitophagy
    evidence_type: IMP
    original_reference_id: PMID:25896323
    review:
      summary: IMP annotation for mitophagy from Palikaras et al. 2015 (Nature).
        This is the core function of DCT-1 as a mitophagy receptor. Loss of 
        dct-1 impairs mitophagy and leads to accumulation of dysfunctional 
        mitochondria.
      action: ACCEPT
      reason: Core biological process annotation. DCT-1 is required for the 
        induction of mitophagy under stress conditions. This is the primary 
        characterized function of DCT-1 in C. elegans, supported by extensive 
        experimental evidence.
      supported_by:
        - reference_id: PMID:25896323
          supporting_text: We find that DCT-1 is a key mediator of mitophagy and
            longevity assurance under conditions of stress in C. elegans. 
            Impairment of mitophagy compromises stress resistance
        - reference_id: file:worm/dct-1/dct-1-deep-research-falcon.md
          supporting_text: DCT-1 is required for the induction of mitophagy 
            under stress conditions
  - term:
      id: GO:0051726
      label: regulation of cell cycle
    evidence_type: IGI
    original_reference_id: PMID:17934462
    review:
      summary: IGI annotation from Pinkston-Gosse & Kenyon 2007 study on DAF-16 
        targets that regulate tumor growth. dct-1 is a DAF-16 target that 
        affects germline tumor growth, which involves cell cycle regulation.
      action: KEEP_AS_NON_CORE
      reason: DCT-1 is a DAF-16 target gene that influences germline tumor 
        growth, which can be interpreted as cell cycle regulation. However, this
        is an indirect effect related to its roles in mitophagy and stress 
        response rather than direct cell cycle regulation. The primary function 
        is mitophagy.
      supported_by:
        - reference_id: PMID:17934462
          supporting_text: Twenty-nine of 734 genes tested influenced 
            germline-tumor cell proliferation or p53-dependent apoptosis
  - term:
      id: GO:0005741
      label: mitochondrial outer membrane
    evidence_type: IDA
    original_reference_id: PMID:25896323
    review:
      summary: IDA annotation for mitochondrial outer membrane localization from
        Palikaras et al. 2015. This is direct experimental evidence showing 
        DCT-1::GFP co-localizes with mitochondrial markers.
      action: ACCEPT
      reason: Core cellular localization with direct experimental evidence. This
        is the primary site of DCT-1 function as a mitophagy receptor.
      supported_by:
        - reference_id: file:worm/dct-1/dct-1-deep-research-falcon.md
          supporting_text: DCT-1 is an integral OMM protein. In vivo imaging and
            protease protection assays show DCT-1::GFP co-localizes with 
            mitochondrial markers
        - reference_id: PMID:25896323
          supporting_text: Coordination of mitophagy and mitochondrial 
            biogenesis during ageing in C.
  - term:
      id: GO:0002020
      label: protease binding
    evidence_type: IPI
    original_reference_id: PMID:11114722
    review:
      summary: IPI annotation for protease binding based on interaction with 
        CED-3 caspase. DCT-1 interacts with the CED-3 caspase prodomain.
      action: ACCEPT
      reason: Valid annotation supported by experimental evidence. DCT-1 
        heterodimerizes with proCED-3 by direct binding via the prodomain. This 
        interaction may contribute to DCT-1's effects on cell death, though 
        DCT-1 kills through a caspase-independent mechanism.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: ceBNIP3 interacts with CED-3 but co-expression of 
            CED-3 and ceBNIP3 does not significantly enhance induction of cell 
            death in the presence or absence of CED-4
        - reference_id: PMID:9824163
          supporting_text: CeBNIP3 also efficiently heterodimerizes with the 
            cell death protease proCED-3 by direct binding via the prodomain
  - term:
      id: GO:0002020
      label: protease binding
    evidence_type: IPI
    original_reference_id: PMID:9824163
    review:
      summary: IPI annotation for protease binding from Yasuda et al. 1998, 
        based on interaction with CED-3 caspase.
      action: ACCEPT
      reason: Valid annotation with experimental evidence. Duplicate of the 
        PMID:11114722 annotation but from an independent study confirming CED-3 
        binding.
      supported_by:
        - reference_id: PMID:9824163
          supporting_text: CeBNIP3 also efficiently heterodimerizes with the 
            cell death protease proCED-3 by direct binding via the prodomain
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:11114722
    review:
      summary: IPI annotation for protein binding based on interaction with 
        CED-9. DCT-1 interacts with CED-9 (Bcl-2 homolog) via its transmembrane 
        domain.
      action: MARK_AS_OVER_ANNOTATED
      reason: '"Protein binding" is too general and uninformative. The specific interaction
        is with CED-9, a Bcl-2 family member. A more specific term should be used,
        though GO may lack a specific "Bcl-2 family protein binding" term. The interaction
        is real but the annotation term is not informative.'
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: ceBNIP3 protein interacts with CED-9 and BCL-XL, but 
            unlike other pro-apoptotic BCL-2 family members, the BH3-like domain
            does not participate in dimerization. The ceBNIP3 TM domain mediates
            interaction with both CED-9 and BCL-XL
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:9824163
    review:
      summary: IPI annotation for protein binding from Yasuda et al. 1998, based
        on interaction with CED-9.
      action: MARK_AS_OVER_ANNOTATED
      reason: '"Protein binding" is too general. The specific interaction is with
        CED-9. Duplicate annotation from a different publication, same issue with
        term specificity.'
      supported_by:
        - reference_id: PMID:9824163
          supporting_text: In transiently transfected mammalian cells, ceBNIP3 
            complexes with CED-9, the worm homolog of BCL-2
  - term:
      id: GO:0006915
      label: apoptotic process
    evidence_type: IMP
    original_reference_id: PMID:11114722
    review:
      summary: IMP annotation for apoptotic process from Cizeau et al. 2000. 
        DCT-1 overexpression in mammalian cells induces cell death, but through 
        a BH3- and caspase-independent mechanism.
      action: KEEP_AS_NON_CORE
      reason: DCT-1 can induce apoptosis when overexpressed, but this is not its
        primary physiological function in C. elegans. The primary function is 
        mitophagy. Additionally, the mechanism is caspase-independent, which 
        differs from canonical apoptosis.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: ceBNIP3 kills mammalian cells by a 
            caspase-independent mechanism
  - term:
      id: GO:0008340
      label: determination of adult lifespan
    evidence_type: IMP
    original_reference_id: PMID:16380712
    review:
      summary: IMP annotation for lifespan determination from Oh et al. 2006. 
        dct-1 is a direct DAF-16 target that affects lifespan.
      action: KEEP_AS_NON_CORE
      reason: DCT-1 affects lifespan through its role in mitophagy. Loss of 
        dct-1 shortens the extended lifespan of daf-2, isp-1, and clk-1 mutants.
        This is an important phenotype but represents a downstream consequence 
        of DCT-1's core mitophagy function rather than a direct molecular 
        function.
      supported_by:
        - reference_id: PMID:16380712
          supporting_text: inactivation of more than half of these genes 
            significantly altered DAF-16-dependent functions, including life 
            span, fat storage and dauer formation
  - term:
      id: GO:0031966
      label: mitochondrial membrane
    evidence_type: IDA
    original_reference_id: PMID:11114722
    review:
      summary: IDA annotation for mitochondrial membrane localization from 
        Cizeau et al. 2000. DCT-1 localizes to mitochondrial membranes via its 
        transmembrane domain.
      action: ACCEPT
      reason: Correct localization annotation. The more specific term 
        (mitochondrial outer membrane) is also annotated, but this annotation is
        valid for the evidence available in this earlier study.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: the TM domain of ceBNIP3 mediates the localization of
            the protein to mitochondria
  - term:
      id: GO:0042803
      label: protein homodimerization activity
    evidence_type: IDA
    original_reference_id: PMID:11114722
    review:
      summary: IDA annotation for protein homodimerization activity. DCT-1 forms
        homodimers via its transmembrane domain, detected as a 50 kDa species.
      action: ACCEPT
      reason: Core molecular function with direct experimental evidence. 
        DCT-1/ceBNIP3 forms homodimers, and this dimerization is mediated by the
        transmembrane domain.
      supported_by:
        - reference_id: PMID:11114722
          supporting_text: ceBNIP3 is expressed primarily as a 25 kDa monomer 
            and a 50 kDa homodimer
  - term:
      id: GO:0032991
      label: protein-containing complex
    evidence_type: IPI
    original_reference_id: PMID:9824163
    review:
      summary: IPI annotation for protein-containing complex based on ternary 
        complex formation with CED-9 and CED-3.
      action: ACCEPT
      reason: Valid annotation. DCT-1 forms complexes with CED-9 and CED-3. 
        While this may represent ancestral apoptosis-related function, the 
        complex formation is experimentally demonstrated.
      supported_by:
        - reference_id: PMID:9824163
          supporting_text: In cells coexpressing CED-9, ceBNIP3 and CED-3, all 
            three proteins exist as a ternary complex suggesting that CED-9 may 
            suppress cooperative apoptosis induced by CED-3 and ceBNIP3 by 
            simultaneous complex formation with CED-3 and ceBNIP3
  - term:
      id: GO:0140580
      label: mitochondrion autophagosome adaptor activity
    evidence_type: IDA
    original_reference_id: PMID:25896323
    review:
      summary: DCT-1 functions as a mitophagy receptor that bridges mitochondria
        to autophagosomes. It contains a WXXL LIR-like motif that binds 
        LGG-1/Atg8 to recruit autophagy machinery to mitochondria.
      action: NEW
      reason: This molecular function term precisely captures DCT-1's core 
        function as a mitophagy receptor/adaptor. DCT-1 colocalizes with 
        LGG-1/Atg8 and facilitates recruitment of the autophagy machinery to 
        mitochondria via its LIR motif. This is the key molecular function 
        enabling mitophagy.
      supported_by:
        - reference_id: file:worm/dct-1/dct-1-deep-research-falcon.md
          supporting_text: DCT-1 colocalizes with LGG-1/Atg8 and facilitates 
            recruitment of the autophagy machinery to mitochondria, engaging 
            receptor-mediated mitophagy similar to mammalian BNIP3/NIX
        - reference_id: PMID:25896323
          supporting_text: Coordination of mitophagy and mitochondrial 
            biogenesis during ageing in C.
references:
  - id: GO_REF:0000002
    title: Gene Ontology annotation through association of InterPro records with
      GO terms
    findings: []
  - id: GO_REF:0000033
    title: Annotation inferences using phylogenetic trees
    findings: []
  - id: GO_REF:0000043
    title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword 
      mapping
    findings: []
  - id: GO_REF:0000044
    title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular 
      Location vocabulary mapping
    findings: []
  - id: GO_REF:0000117
    title: Electronic Gene Ontology annotations created by ARBA machine learning
      models
    findings: []
  - id: PMID:11114722
    title: The C. elegans orthologue ceBNIP3 interacts with CED-9 and CED-3 but 
      kills through a BH3- and caspase-independent mechanism.
    findings:
      - statement: DCT-1/ceBNIP3 interacts with CED-9 and CED-3
        supporting_text: ceBNIP3 protein interacts with CED-9 and BCL-XL
      - statement: Forms homodimers via transmembrane domain
        supporting_text: ceBNIP3 is expressed primarily as a 25 kDa monomer and 
          a 50 kDa homodimer
      - statement: Localizes to mitochondria via C-terminal TM domain
        supporting_text: the TM domain of ceBNIP3 mediates the localization of 
          the protein to mitochondria
      - statement: Kills through BH3- and caspase-independent mechanism
        supporting_text: ceBNIP3 kills mammalian cells by a caspase-independent 
          mechanism
      - statement: Degraded by ubiquitin-proteasome pathway
        supporting_text: ceBNIP3 protein is rapidly degraded through a 
          ubiquitin-dependent pathway by the proteasome
  - id: PMID:16380712
    title: Identification of direct DAF-16 targets controlling longevity, 
      metabolism and diapause by chromatin immunoprecipitation.
    findings:
      - statement: dct-1 is a direct DAF-16 target gene
        supporting_text: We cloned 103 target sequences containing consensus 
          DAF-16 binding sites
      - statement: DAF-16 target genes affect lifespan
        supporting_text: inactivation of more than half of these genes 
          significantly altered DAF-16-dependent functions, including life span
  - id: PMID:17934462
    title: DAF-16/FOXO targets genes that regulate tumor growth in 
      Caenorhabditis elegans.
    findings:
      - statement: dct-1 is among DAF-16 targets affecting germline tumor cell 
          proliferation
        supporting_text: Twenty-nine of 734 genes tested influenced 
          germline-tumor cell proliferation or p53-dependent apoptosis
  - id: PMID:25896323
    title: Coordination of mitophagy and mitochondrial biogenesis during ageing 
      in C. elegans.
    findings:
      - statement: DCT-1 is the C. elegans BNIP3/NIX homolog and key mediator of
          mitophagy
        supporting_text: We find that DCT-1 is a key mediator of mitophagy and 
          longevity assurance under conditions of stress in C. elegans
      - statement: Impairment of mitophagy compromises stress resistance
        supporting_text: Impairment of mitophagy compromises stress resistance 
          and triggers mitochondrial retrograde signalling
      - statement: SKN-1 regulates DCT-1 expression
        supporting_text: mitophagy by enhancing DCT-1 expression
  - id: PMID:9824163
    title: Regulation of apoptosis by a Caenorhabditis elegans BNIP3 homolog.
    findings:
      - statement: ceBNIP3 complexes with CED-9
        supporting_text: ceBNIP3 complexes with CED-9, the worm homolog of BCL-2
      - statement: Heterodimerizes with proCED-3 via prodomain
        supporting_text: CeBNIP3 also efficiently heterodimerizes with the cell 
          death protease proCED-3 by direct binding via the prodomain
      - statement: Forms ternary complex with CED-9 and CED-3
        supporting_text: In cells coexpressing CED-9, ceBNIP3 and CED-3, all 
          three proteins exist as a ternary complex
      - statement: May initiate apoptosis by recruiting CED-3 to mitochondria
        supporting_text: ceBNIP3 may be a novel component of the C. elegans 
          apoptosis paradigm and may initiate apoptosis by recruiting CED-3 to 
          mitochondria
  - id: file:worm/dct-1/dct-1-deep-research-falcon.md
    title: Deep research review of DCT-1 function
    findings:
      - statement: DCT-1 is an outer mitochondrial membrane mitophagy receptor
        supporting_text: DCT-1 is an integral OMM protein
      - statement: Contains LIR-like WXXL motif for LGG-1 binding
        supporting_text: DCT-1 carries characteristic features of BNIP3-family 
          mitophagy receptors, including a conserved WXXL motif
      - statement: Works in pathway with PINK-1 and PDR-1
        supporting_text: "DCT-1 functions in concert with the PINK-1–PDR-1 (Parkin)
          ubiquitin pathway"
core_functions:
  - description: DCT-1 is the key mitophagy receptor in C. elegans. It is 
      required for stress-induced mitophagy and works in a pathway with PINK-1 
      and PDR-1/Parkin. Loss of dct-1 leads to accumulation of dysfunctional 
      mitochondria with increased mass, decreased ATP, increased ROS, and 
      membrane depolarization.
    molecular_function:
      id: GO:0140580
      label: mitochondrion autophagosome adaptor activity
    directly_involved_in:
      - id: GO:0000423
        label: mitophagy
    locations:
      - id: GO:0005741
        label: mitochondrial outer membrane
  - description: DCT-1 forms homodimers via its transmembrane domain. 
      Dimerization is a characteristic feature of BNIP3 family proteins.
    molecular_function:
      id: GO:0042803
      label: protein homodimerization activity
    locations:
      - id: GO:0005741
        label: mitochondrial outer membrane
proposed_new_terms: []
suggested_questions:
  - question: Does DCT-1 interact directly with LGG-1/Atg8 in C. elegans?
  - question: What is the physiological significance of DCT-1's apoptotic 
      function vs mitophagy function?
suggested_experiments:
  - hypothesis: DCT-1 directly binds LGG-1/Atg8 via its WXXL LIR-like motif
    description: Co-immunoprecipitation of DCT-1 and LGG-1 in C. elegans would 
      directly demonstrate DCT-1-LGG-1 interaction in vivo.
  - hypothesis: The WXXL motif is required for DCT-1-mediated mitophagy
    description: Structure-function analysis of DCT-1 WXXL motif in mitophagy. 
      While mutation of the WXXL motif impairs stress resistance, direct 
      demonstration that this is due to loss of LGG-1 binding would strengthen 
      the mitophagy receptor function annotation.
tags:
  - caeel-mitophagy
