fis-2 (F13B9.8) is one of two Caenorhabditis elegans homologs of FIS1, a small (151 aa) tail-anchored protein of the mitochondrial outer membrane. Like other FIS1-family members it has a cytosol-facing tetratricopeptide-repeat (TPR) fold and a single C-terminal transmembrane helix that anchors it in the outer membrane with the TPR body exposed to the cytosol. The worm genome encodes a second FIS1 homolog, fis-1, with which fis-2 acts partly redundantly. In mammals and fungi FIS1 proteins are receptor/adaptor factors implicated in recruiting the dynamin-related GTPase DRP1 to the outer membrane during mitochondrial (and peroxisomal) fission. In C. elegans, however, loss of fis-2 (alone or together with fis-1) does not detectably impair mitochondrial or peroxisomal fission or morphology; the essential fission machinery is instead MFF/DRP-1. The functions demonstrated for fis-2 are downstream of, or parallel to, fission: it has a minor pro-apoptotic role in promoting the elimination of mitochondria in dying cells, acting downstream of the CED-3 caspase and independently of DRP-1 and CED-9, and it contributes (redundantly with fis-1) to the orderly disposal of damaged mitochondria, where loss of both paralogs causes stress-induced accumulation of large autophagic (LGG-1/LC3-positive) aggregates containing mitochondrial remnants. fis-2 is thus a mitochondrial outer membrane FIS1-family protein linked to mitochondrial quality control and cell-death execution rather than to the core fission reaction.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0008289
lipid binding
|
IBA
GO_REF:0000033 |
MARK AS OVER ANNOTATED |
Summary: Family-level phylogenetic (IBA) inference of a generic "lipid binding" molecular function. There is no C. elegans-specific evidence that FIS-2 binds lipid; its C-terminal transmembrane helix mediates membrane anchoring, which is not the same as a lipid-binding molecular function. This is a weak, uninformative over-propagation for this gene.
Reason: No experimental support in worm; the informative molecular function inferred for FIS1-family proteins is adaptor/receptor activity (GO:0060090), not lipid binding. Membrane anchoring via the tail-anchor TM helix does not justify a lipid-binding MF.
Propagation Review
Root cause:
TERM SCOPING PROBLEM
Failure modes:
GRANULARITY MISMATCH
Sources checked:
PANTHER:PTN000326738
· FIS1 family node
SOURCE WEAK OR INFERRED
|
|
GO:0060090
molecular adaptor activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: The most informative molecular-function term available for a FIS1-family protein: an outer-membrane receptor/adaptor that helps bring the fission GTPase DRP-1 into the fission/degradation machinery. Consistent with fis-2 being a tail-anchored mitochondrial outer membrane protein that acts within the DRP-1/MAM disposal machinery. Important caveat: this is entirely family-level inference — no worm FIS-2 protein has been shown to bind DRP-1, an adaptor, or any partner (see knowledge_gaps).
Reason: Best-supported and most informative MF term for this gene; consistent with the family function (Drp1 recruitment/adaptor). Retained as the representative molecular function while flagged as an MF-dark gap because it is undemonstrated for fis-2 specifically.
Supporting Evidence:
PMID:24196833
Recruitment of Drp1 to mitochondria is mediated by proteins that are anchored in the mitochondrial outer membrane
PMID:24196833
Fis1 is part of the MAM complex and contributes to a late stage of the removal process but is not required for entry of Drp1 into the MAM or fission
|
|
GO:0005741
mitochondrial outer membrane
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Mitochondrial outer membrane is the expected site of action for a FIS1-family tail-anchored protein and is consistent with the fis-2 IDA mitochondrion localization (PMID:18722182) and ISS from human FIS1. Accept as the core cellular component, recognizing that OM-resolution localization of worm fis-2 is inferred (homology + tail-anchor topology) rather than directly resolved.
Reason: Well-supported localization consistent with the family and with the experimental (IDA) mitochondrial annotation; core to FIS-2 function.
|
|
GO:0005778
peroxisomal membrane
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Peroxisomal membrane localization is inferred from mammalian/plant FIS1 homologs, which act in peroxisome fission. Plausible for worm fis-2 by homology but not directly demonstrated, and fis-1;fis-2 mutants have normal (punctate) peroxisomes. Retain as a non-core, homology-based localization.
Reason: No direct worm evidence for peroxisomal localization or a peroxisomal role; family-level propagation. Not a core function of C. elegans fis-2.
Supporting Evidence:
PMID:24196833
showing punctate peroxisomes in wild-type and Fis1 mutants
|
|
GO:0000266
mitochondrial fission
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Mitochondrial fission is the ancestral FIS1-family process, but in C. elegans loss of fis-2 (alone or with fis-1) does NOT impair mitochondrial fission or morphology, and Fis1 homologs are not essential for fission or DRP-1 recruitment (MFF/DRP-1 are the essential factors). Retain as non-core: fis-2 belongs to the fission machinery at the family level but is not required for fission in worm.
Reason: Defensible at the family level, but loss-of-function is phenotypically silent for fission in worm; this is not the core, essential fission determinant.
Supporting Evidence:
PMID:24196833
Our results show that fis-1 and fis-2 single and double mutants have wild-type mitochondrial morphologies, as also shown by others
PMID:24196833
Mff and Fis1 are not essential for fission or for Drp1 recruitment to mitochondria in C. elegans
|
|
GO:0016559
peroxisome fission
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Peroxisome fission is a documented FIS1 function in mammals and plants, but in C. elegans fis-1;fis-2 mutants have normal punctate peroxisomes and only Mff/Drp1 loss produces tubular (fission-defective) peroxisomes. Family-level propagation not supported by direct worm evidence; retain as non-core.
Reason: No demonstrated peroxisome-fission role for worm fis-2; the worm data show normal peroxisomes in Fis1 mutants. Keep as homology-based, non-core.
Propagation Review
Root cause:
PROPAGATION BAD
Failure modes:
FUNCTIONAL DIVERGENCE
Sources checked:
PANTHER:PTN000326738
· FIS1 family node
SUPPORTS SOURCE BUT NOT TARGET
Supporting Evidence:
PMID:24196833
showing punctate peroxisomes in wild-type and Fis1 mutants and tubular peroxisomes in drp-1 mutant and Mff double mutants
|
|
GO:0000266
mitochondrial fission
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: Electronic InterPro2GO mapping of the Fis1 domain (IPR016543) to mitochondrial fission. Same considerations as the IBA mitochondrial-fission annotation: defensible at the family/domain level but not the core essential fission role in worm.
Reason: Redundant with the IBA mitochondrial-fission annotation; family/domain-level inference. Non-core given the loss-of-function-silent fission phenotype in worm.
|
|
GO:0005739
mitochondrion
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Automated electronic annotation to the mitochondrion. Correct and corroborated by the direct experimental (IDA) mitochondrial localization from PMID:18722182 and by ISS from human FIS1.
Reason: Well-supported core localization; consistent with the experimental IDA annotation.
|
|
GO:0005741
mitochondrial outer membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: UniProt subcellular-location mapping to mitochondrial outer membrane, consistent with the FIS1 tail-anchor topology and ISS from human FIS1.
Reason: Well-supported core localization; redundant with the ISS annotation and consistent with the experimental mitochondrial localization.
|
|
GO:0005778
peroxisomal membrane
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: UniProt subcellular-location mapping to peroxisomal membrane, transferred from the mammalian FIS1 dual localization. Not directly shown in worm; non-core.
Reason: Homology-based peroxisomal localization; no direct C. elegans evidence. Retain as non-core.
|
|
GO:0005741
mitochondrial outer membrane
|
ISS
GO_REF:0000024 |
ACCEPT |
Summary: ISS transfer of mitochondrial outer membrane localization from human FIS1 (Q9Y3D6). Consistent with the fis-2 IDA mitochondrial localization and the tail-anchor topology.
Reason: Well-supported core localization; consistent with experimental worm data.
|
|
GO:0005778
peroxisomal membrane
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: ISS transfer of peroxisomal membrane localization from human FIS1. Plausible by homology but not demonstrated in worm; non-core.
Reason: Homology-based; no direct worm evidence for peroxisomal localization.
|
|
GO:0036498
IRE1-mediated unfolded protein response
|
HEP
PMID:16184190 Genetic interactions due to constitutive and inducible gene ... |
KEEP AS NON CORE |
Summary: High-throughput expression-profiling (HEP) annotation: fis-2 (F13B9.8) was identified as a UPR-regulated gene in a genome-wide microarray study of the C. elegans unfolded protein response. This reflects transcriptional co-regulation of fis-2 with the IRE1/XBP-1 UPR, not a demonstrated functional role of fis-2 within the UPR pathway. fis-2 is not named in the paper's text (the evidence is in supplementary tables), so no verbatim supporting quote is available.
Reason: Expression-based (HEP) association only; being a UPR target gene does not establish that fis-2 acts in the UPR. Retain as a peripheral, non-core annotation reflecting transcriptional responsiveness, not core function.
|
|
GO:0005739
mitochondrion
|
IDA
PMID:18722182 Caenorhabditis elegans drp-1 and fis-2 regulate distinct cel... |
ACCEPT |
Summary: Direct experimental (IDA) mitochondrial localization of FIS-2 curated by WormBase from Breckenridge et al. 2008. This is the strongest, fis-2-specific evidence for FIS-2 localization and anchors the core cellular component. The cached record is abstract-only, so the localization figure is not quotable here; the annotation is retained on the WormBase curator's IDA assignment.
Reason: Direct experimental assay in C. elegans (WormBase IDA); the experimental basis for FIS-2 mitochondrial localization.
|
|
GO:0006915
apoptotic process
|
IGI
PMID:18722182 Caenorhabditis elegans drp-1 and fis-2 regulate distinct cel... |
ACCEPT |
Summary: The only individually demonstrated fis-2 function. Genetic-interaction (IGI) evidence: fis-2 has a minor pro-apoptotic role, revealed in sensitized genetic backgrounds, acting downstream of the CED-3 caspase and independently of DRP-1 and CED-9 to promote elimination of mitochondria in dying cells and facilitate cell-death execution. The effect is minor (fis-2 single mutants show only small changes in cell-corpse numbers), so this is a genuine but non-essential role.
Reason: Experimentally supported, fis-2-specific role in cell-death execution (IGI with ced-3). This is the best-characterized function of fis-2 and should be retained.
Supporting Evidence:
PMID:18722182
minor proapoptotic roles for drp-1 and fis-2, a homolog of human Fis1, are revealed in sensitized genetic backgrounds
PMID:18722182
reveal distinct roles for drp-1 and fis-2 as mediators of cell-death execution downstream of caspase activation
|
|
GO:0000423
mitophagy
|
IGI
PMID:24196833 Mutations in Fis1 disrupt orderly disposal of defective mito... |
NEW |
Summary: Proposed new annotation (not currently in GOA). Genetic loss of both FIS1 paralogs (the fis-1;fis-2 double mutant) disrupts the orderly disposal of defective mitochondria: mitochondrial stress induces accumulation of large LGG-1/LC3-positive autophagic aggregates containing mitochondrial remnants and DRP-1, and these aggregates/mitophagosome spots are suppressed by drp-1, mff, and pink-1 mutations. fis-2 is genetically part of this pathway (drp-1 fis-1 fis-2 and pink-1 fis-1 fis-2 triple mutants). IMPORTANT: the disposal phenotype was only demonstrated in the fis-1;fis-2 double, so fis-2's contribution is redundant with fis-1, not shown to be fis-2-autonomous.
Reason: Captures the experimentally supported biological process in which fis-2 participates (coupling stress-induced fission to mitophagic disposal), currently absent from GOA. Annotated as IGI (redundancy with fis-1) to reflect that the phenotype requires loss of both paralogs.
Supporting Evidence:
PMID:24196833
pink-1 single and pink-1 fis-1 fis-2 triple mutant animals had no colocalizing spots, as expected for a complete block of mitophagy
PMID:24196833
a drp-1 fis-1 fis-2 triple mutant strain also had reduced number and size of aggregates when treated with Paraquat
|
Q: Does a fis-2 single loss-of-function (independent of fis-1) measurably alter mitophagic flux or mitochondrial quality control, or is fis-2 fully redundant with fis-1?
Q: Does C. elegans FIS-2 physically interact with DRP-1 or MAM/ER-mitochondria components, and does it use an adaptor intermediate, as mammalian FIS1 does under stress?
Q: Do the two worm FIS1 paralogs partition functionally (fis-2 toward cell-death-execution disposal, fis-1 toward UVC/mtDNA-damage removal), or are they interchangeable?
Experiment: Compare stage-resolved mitophagy flux (mito-Rosella / mtKeima or LGG-1 puncta maturation) after Paraquat or antimycin A across wild-type, fis-2 single, fis-1 single, and fis-1;fis-2 double mutants, with allele-specific rescue, to isolate any fis-2-autonomous step.
Hypothesis: FIS-2 makes a distinct, non-redundant contribution to stress-induced mitophagy that is masked by the paralog fis-1 in double-mutant analyses.
Experiment: Use proximity labeling (TurboID) or co-immunoprecipitation of endogenously tagged FIS-2 from C. elegans under basal and mitochondrial-stress conditions to identify DRP-1, MAM, and autophagy/apoptosis interactors and to test for adaptor intermediates, comparing the FIS-2 and FIS-1 interactomes.
Hypothesis: Worm FIS-2 has direct or adaptor-mediated partners at the mitochondrial outer membrane / ER-mitochondrial interface.
What is not known — curated, literature-grounded statements of the open unknowns (the inverse of core functions).
Gap: The molecular activity of FIS-2 is entirely undetermined experimentally. Its only molecular-function annotation ("molecular adaptor activity") is a phylogenetic (IBA) propagation from the FIS1 family; no C. elegans FIS-2 protein has been shown to bind DRP-1, a fission adaptor, lipid, or any other partner, and no biochemical or structural study of worm FIS-2 exists.
OPEN BIOLOGY MF_DARK
What is known: Established: FIS-2 is a FIS1-family tail-anchored protein of the mitochondrial outer membrane (IDA mitochondrion; ISS/tail-anchor topology) that participates genetically in mitochondrial disposal. Unknown: what FIS-2 actually does at the molecular level - its direct binding partner(s) and the biochemical activity, if any, beyond membrane anchoring.
Significance: FIS1 has long been presumed a fission receptor; worm (and mammalian) data reassign the family to mitochondrial quality-control roles whose mechanism is unresolved. For the fis-2 paralog specifically, even the assumed adaptor activity is untested, making it a genuinely dark molecular function relevant to PINK1/Parkin quality-control biology.
Provenance (the field's own admissions):
Gap: Whether FIS-2 has any non-redundant, fis-2-autonomous role in mitochondrial disposal/mitophagy is unresolved. Every mitophagy/LGG-1-aggregate phenotype was scored in the fis-1(tm1867); fis-2(gk414) double mutant (the "Fis1 mutant"), and both single mutants have wild-type mitochondrial morphology, so the individual contribution of fis-2 to orderly disposal (versus complete redundancy with, or dispensability relative to, fis-1) has not been measured.
OPEN BIOLOGY RESIDUAL_SUBGAP
What is known: Established: the fis-1;fis-2 double mutant accumulates stress-induced LGG-1 aggregates and lies genetically downstream of MFF/DRP-1 and PINK-1. Unknown: what a fis-2 single loss-of-function does to mitophagic flux, and whether fis-2 contributes anything the paralog fis-1 does not.
Significance: Distinguishing redundant from specialized paralog functions is required before fis-2 can be assigned a specific mitophagy role rather than a family-level one, and determines whether fis-2 is a distinct quality-control node or a fis-1 backup.
Provenance (the field's own admissions):
Gap: The direct binding partners and interactome of C. elegans FIS-2 are unmapped. It is unknown whether FIS-2 binds DRP-1 (directly or via an adaptor intermediate analogous to yeast Mdv1/Caf4), whether it joins an ER-mitochondria (MAM) fission/disposal complex as mammalian FIS1 does under stress, and which downstream autophagy or apoptotic-machinery factors it engages.
OPEN BIOLOGYCURATION MF_DARK
What is known: Established (in mammals): stress induces a DRP-1-FIS1 co-immunoprecipitable complex that also contains ER/MAM proteins. Unknown (for worm FIS-2): its physical interactors, and whether the mammalian complex applies to this paralog.
Provenance (the field's own admissions):
Gap: The mechanism and biological significance of the fis-2-specific pro-apoptotic role are unknown. fis-2 promotes elimination of mitochondria in dying cells downstream of CED-3 and independently of DRP-1/CED-9, but whether this uses the same membrane machinery as its (redundant) mitophagy role, why the effect is only detectable in sensitized backgrounds, and why this activity is foregrounded for fis-2 but not fis-1, are all unresolved.
OPEN BIOLOGY MF_DARK
What is known: Established: in sensitized backgrounds fis-2 has a minor, CED-3-dependent, DRP-1/CED-9-independent pro-apoptotic effect on mitochondrial elimination. Unknown: the molecular basis of this activity and its relationship to the paralog-redundant mitophagy pathway.
Provenance (the field's own admissions):
UniProt: Q6AHP8 (FIS12_CAEEL); WormBase F13B9.8 / WBGene00001425; ORF F13B9.8; Chromosome X.
Human ortholog: FIS1 (Q9Y3D6). Paralog in worm: fis-1 (Q20291, WBGene00001424) — a first FIS1
homologue reviewed separately (PR #1672, merged). Part of the flagship
projects/CAEEL_MITOPHAGY.md project.
151 aa tail-anchored protein: cytosol-facing TPR-fold body (CDD cd12212 Fis1; Pfam PF14852
Fis1_TPR_N + PF14853 Fis1_TPR_C) + a single C-terminal transmembrane helix (UniProt FT
TRANSMEM 126..146) that anchors it in the mitochondrial outer membrane. Belongs to the FIS1
family (PIRSF008835; PANTHER PTHR13247:SF0). PE 3: Inferred from homology (no experimental
protein-level evidence beyond localization/genetics).
Falcon deep research (just deep-research-falcon worm fis-2 --fallback perplexity-lite) was
attempted TWICE. Both runs timed out after the built-in 600 s falcon limit under heavy
concurrent Edison load (multiple sibling worktrees were simultaneously running falcon jobs for
other worm genes), and the perplexity-lite fallback failed with an HTTP 401
insufficient_quota error on both attempts. No fis-2-deep-research-falcon.md (or
perplexity-lite) file was produced, so none is committed (never fabricate a -deep-research-*
file). This review is therefore grounded directly in UniProt (Q6AHP8), GOA (15 annotations),
and cached primary literature. Critically, the one paper that directly characterises worm
fis-2 loss-of-function (PMID:24196833, full text cached) and the paper that reports a
fis-2-specific apoptotic phenotype (PMID:18722182, ABSTRACT-ONLY in cache) were both read
directly, so every existing annotation could be adjudicated without an UNDECIDED call.
fis-2-uniprot.txt)fis-2-goa.tsv) — 15 annotationsid: Q6AHP8
gene_symbol: fis-2
product_type: PROTEIN
status: DRAFT
taxon:
id: NCBITaxon:6239
label: Caenorhabditis elegans
description: >-
fis-2 (F13B9.8) is one of two Caenorhabditis elegans homologs of FIS1, a small
(151 aa) tail-anchored protein of the mitochondrial outer membrane. Like other
FIS1-family members it has a cytosol-facing tetratricopeptide-repeat (TPR) fold
and a single C-terminal transmembrane helix that anchors it in the outer
membrane with the TPR body exposed to the cytosol. The worm genome encodes a
second FIS1 homolog, fis-1, with which fis-2 acts partly redundantly. In
mammals and fungi FIS1 proteins are receptor/adaptor factors implicated in
recruiting the dynamin-related GTPase DRP1 to the outer membrane during
mitochondrial (and peroxisomal) fission. In C. elegans, however, loss of fis-2
(alone or together with fis-1) does not detectably impair mitochondrial or
peroxisomal fission or morphology; the essential fission machinery is instead
MFF/DRP-1. The functions demonstrated for fis-2 are downstream of, or parallel
to, fission: it has a minor pro-apoptotic role in promoting the elimination of
mitochondria in dying cells, acting downstream of the CED-3 caspase and
independently of DRP-1 and CED-9, and it contributes (redundantly with fis-1)
to the orderly disposal of damaged mitochondria, where loss of both paralogs
causes stress-induced accumulation of large autophagic (LGG-1/LC3-positive)
aggregates containing mitochondrial remnants. fis-2 is thus a mitochondrial
outer membrane FIS1-family protein linked to mitochondrial quality control and
cell-death execution rather than to the core fission reaction.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:16184190
title: Genetic interactions due to constitutive and inducible gene regulation mediated
by the unfolded protein response in C. elegans.
findings:
- statement: >-
A genome-wide C. elegans UPR microarray study. fis-2 (F13B9.8) is not named
in the abstract or main text; its identification as a UPR-regulated gene is
in the supplementary microarray tables, which is the basis of the WormBase
HEP annotation to IRE1-mediated UPR.
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: >-
PMC full text confirmed (full_text_available: true). This is a
transcriptional-profiling study of the C. elegans UPR; fis-2 appears only as
a high-throughput expression-profiling (HEP) target in supplementary data.
No verbatim fis-2 quote is available. Supports at most that fis-2 mRNA is
UPR-responsive, not that fis-2 functions in the UPR; used to justify a
non-core, expression-based annotation only.
- id: PMID:18722182
title: Caenorhabditis elegans drp-1 and fis-2 regulate distinct cell-death execution
pathways downstream of ced-3 and independent of ced-9.
findings:
- statement: >-
fis-2 (a homolog of human Fis1) has a minor pro-apoptotic role revealed in
sensitized genetic backgrounds, acting downstream of the CED-3 caspase and
independently of DRP-1 and CED-9 to promote elimination of mitochondria in
dying cells.
supporting_text: >-
minor proapoptotic roles for drp-1 and fis-2, a homolog of human Fis1, are
revealed in sensitized genetic backgrounds
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Cached record is abstract-only (full_text_available: false). The abstract
directly foregrounds fis-2 and is the source of the fis-2-specific IGI
apoptosis annotation and (via full text not in cache) the IDA mitochondrion
localization curated by WormBase. This is the ONLY paper demonstrating an
individual (fis-2 single-gene) loss-of-function phenotype for fis-2.
- id: PMID:24196833
title: Mutations in Fis1 disrupt orderly disposal of defective mitochondria.
findings:
- statement: >-
C. elegans fis-2 single and fis-1;fis-2 double mutants have wild-type
mitochondrial (and peroxisomal) morphology; Fis1 homologs are not essential
for fission or for DRP-1 recruitment, unlike MFF/DRP-1.
supporting_text: >-
Our results show that fis-1 and fis-2 single and double mutants have wild-type
mitochondrial morphologies, as also shown by others
- statement: >-
Loss of both FIS1 paralogs (the fis-1;fis-2 "Fis1" double mutant) causes
stress-induced accumulation of large LGG-1 autophagic aggregates containing
mitochondrial remnants and DRP-1; drp-1 fis-1 fis-2 and pink-1 fis-1 fis-2
triple mutants place fis-2 genetically in the mitophagic disposal pathway
downstream of DRP-1/MFF and PINK-1.
supporting_text: >-
pink-1 single and pink-1 fis-1 fis-2 triple mutant animals had no colocalizing
spots, as expected for a complete block of mitophagy
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
PMC full text confirmed. Directly characterizes C. elegans fis-2 using the
fis-1(tm1867); fis-2(gk414) double mutant (called the "Fis1 mutant"
throughout) plus drp-1 fis-1 fis-2 and pink-1 fis-1 fis-2 triple mutants.
Establishes that fis-2 is dispensable for fission and contributes REDUNDANTLY
(only demonstrated in the double mutant) to orderly disposal of defective
mitochondria. Not in the GOA seed set; added here because it is the primary
loss-of-function characterization of worm fis-2.
existing_annotations:
- term:
id: GO:0008289
label: lipid binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
Family-level phylogenetic (IBA) inference of a generic "lipid binding"
molecular function. There is no C. elegans-specific evidence that FIS-2 binds
lipid; its C-terminal transmembrane helix mediates membrane anchoring, which
is not the same as a lipid-binding molecular function. This is a weak,
uninformative over-propagation for this gene.
action: MARK_AS_OVER_ANNOTATED
reason: >-
No experimental support in worm; the informative molecular function inferred
for FIS1-family proteins is adaptor/receptor activity (GO:0060090), not lipid
binding. Membrane anchoring via the tail-anchor TM helix does not justify a
lipid-binding MF.
propagation_review:
root_cause: TERM_SCOPING_PROBLEM
failure_modes:
- GRANULARITY_MISMATCH
source_entities:
- source_id: PANTHER:PTN000326738
source_label: FIS1 family node
source_status: SOURCE_WEAK_OR_INFERRED
- term:
id: GO:0060090
label: molecular adaptor activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
The most informative molecular-function term available for a FIS1-family
protein: an outer-membrane receptor/adaptor that helps bring the fission
GTPase DRP-1 into the fission/degradation machinery. Consistent with fis-2
being a tail-anchored mitochondrial outer membrane protein that acts within
the DRP-1/MAM disposal machinery. Important caveat: this is entirely
family-level inference — no worm FIS-2 protein has been shown to bind DRP-1,
an adaptor, or any partner (see knowledge_gaps).
action: ACCEPT
reason: >-
Best-supported and most informative MF term for this gene; consistent with
the family function (Drp1 recruitment/adaptor). Retained as the representative
molecular function while flagged as an MF-dark gap because it is undemonstrated
for fis-2 specifically.
supported_by:
- reference_id: PMID:24196833
supporting_text: >-
Recruitment of Drp1 to mitochondria is mediated by proteins that are anchored
in the mitochondrial outer membrane
- reference_id: PMID:24196833
supporting_text: >-
Fis1 is part of the MAM complex and contributes to a late stage of the removal
process but is not required for entry of Drp1 into the MAM or fission
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
Mitochondrial outer membrane is the expected site of action for a FIS1-family
tail-anchored protein and is consistent with the fis-2 IDA mitochondrion
localization (PMID:18722182) and ISS from human FIS1. Accept as the core
cellular component, recognizing that OM-resolution localization of worm fis-2
is inferred (homology + tail-anchor topology) rather than directly resolved.
action: ACCEPT
reason: >-
Well-supported localization consistent with the family and with the
experimental (IDA) mitochondrial annotation; core to FIS-2 function.
- term:
id: GO:0005778
label: peroxisomal membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
Peroxisomal membrane localization is inferred from mammalian/plant FIS1
homologs, which act in peroxisome fission. Plausible for worm fis-2 by
homology but not directly demonstrated, and fis-1;fis-2 mutants have normal
(punctate) peroxisomes. Retain as a non-core, homology-based localization.
action: KEEP_AS_NON_CORE
reason: >-
No direct worm evidence for peroxisomal localization or a peroxisomal role;
family-level propagation. Not a core function of C. elegans fis-2.
supported_by:
- reference_id: PMID:24196833
supporting_text: showing punctate peroxisomes in wild-type and Fis1 mutants
- term:
id: GO:0000266
label: mitochondrial fission
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
Mitochondrial fission is the ancestral FIS1-family process, but in C. elegans
loss of fis-2 (alone or with fis-1) does NOT impair mitochondrial fission or
morphology, and Fis1 homologs are not essential for fission or DRP-1
recruitment (MFF/DRP-1 are the essential factors). Retain as non-core: fis-2
belongs to the fission machinery at the family level but is not required for
fission in worm.
action: KEEP_AS_NON_CORE
reason: >-
Defensible at the family level, but loss-of-function is phenotypically silent
for fission in worm; this is not the core, essential fission determinant.
supported_by:
- reference_id: PMID:24196833
supporting_text: >-
Our results show that fis-1 and fis-2 single and double mutants have wild-type
mitochondrial morphologies, as also shown by others
- reference_id: PMID:24196833
supporting_text: >-
Mff and Fis1 are not essential for fission or for Drp1 recruitment to
mitochondria in C. elegans
- term:
id: GO:0016559
label: peroxisome fission
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
Peroxisome fission is a documented FIS1 function in mammals and plants, but in
C. elegans fis-1;fis-2 mutants have normal punctate peroxisomes and only
Mff/Drp1 loss produces tubular (fission-defective) peroxisomes. Family-level
propagation not supported by direct worm evidence; retain as non-core.
action: KEEP_AS_NON_CORE
reason: >-
No demonstrated peroxisome-fission role for worm fis-2; the worm data show
normal peroxisomes in Fis1 mutants. Keep as homology-based, non-core.
supported_by:
- reference_id: PMID:24196833
supporting_text: >-
showing punctate peroxisomes in wild-type and Fis1 mutants and tubular
peroxisomes in drp-1 mutant and Mff double mutants
propagation_review:
root_cause: PROPAGATION_BAD
failure_modes:
- FUNCTIONAL_DIVERGENCE
source_entities:
- source_id: PANTHER:PTN000326738
source_label: FIS1 family node
source_status: SUPPORTS_SOURCE_BUT_NOT_TARGET
- term:
id: GO:0000266
label: mitochondrial fission
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: >-
Electronic InterPro2GO mapping of the Fis1 domain (IPR016543) to mitochondrial
fission. Same considerations as the IBA mitochondrial-fission annotation:
defensible at the family/domain level but not the core essential fission role
in worm.
action: KEEP_AS_NON_CORE
reason: >-
Redundant with the IBA mitochondrial-fission annotation; family/domain-level
inference. Non-core given the loss-of-function-silent fission phenotype in
worm.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: >-
Automated electronic annotation to the mitochondrion. Correct and corroborated
by the direct experimental (IDA) mitochondrial localization from PMID:18722182
and by ISS from human FIS1.
action: ACCEPT
reason: >-
Well-supported core localization; consistent with the experimental IDA
annotation.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
UniProt subcellular-location mapping to mitochondrial outer membrane,
consistent with the FIS1 tail-anchor topology and ISS from human FIS1.
action: ACCEPT
reason: >-
Well-supported core localization; redundant with the ISS annotation and
consistent with the experimental mitochondrial localization.
- term:
id: GO:0005778
label: peroxisomal membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
UniProt subcellular-location mapping to peroxisomal membrane, transferred from
the mammalian FIS1 dual localization. Not directly shown in worm; non-core.
action: KEEP_AS_NON_CORE
reason: >-
Homology-based peroxisomal localization; no direct C. elegans evidence. Retain
as non-core.
- term:
id: GO:0005741
label: mitochondrial outer membrane
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: >-
ISS transfer of mitochondrial outer membrane localization from human FIS1
(Q9Y3D6). Consistent with the fis-2 IDA mitochondrial localization and the
tail-anchor topology.
action: ACCEPT
reason: Well-supported core localization; consistent with experimental worm data.
- term:
id: GO:0005778
label: peroxisomal membrane
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: >-
ISS transfer of peroxisomal membrane localization from human FIS1. Plausible by
homology but not demonstrated in worm; non-core.
action: KEEP_AS_NON_CORE
reason: Homology-based; no direct worm evidence for peroxisomal localization.
- term:
id: GO:0036498
label: IRE1-mediated unfolded protein response
evidence_type: HEP
original_reference_id: PMID:16184190
qualifier: acts_upstream_of_or_within
review:
summary: >-
High-throughput expression-profiling (HEP) annotation: fis-2 (F13B9.8) was
identified as a UPR-regulated gene in a genome-wide microarray study of the
C. elegans unfolded protein response. This reflects transcriptional
co-regulation of fis-2 with the IRE1/XBP-1 UPR, not a demonstrated functional
role of fis-2 within the UPR pathway. fis-2 is not named in the paper's text
(the evidence is in supplementary tables), so no verbatim supporting quote is
available.
action: KEEP_AS_NON_CORE
reason: >-
Expression-based (HEP) association only; being a UPR target gene does not
establish that fis-2 acts in the UPR. Retain as a peripheral, non-core
annotation reflecting transcriptional responsiveness, not core function.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IDA
original_reference_id: PMID:18722182
qualifier: located_in
review:
summary: >-
Direct experimental (IDA) mitochondrial localization of FIS-2 curated by
WormBase from Breckenridge et al. 2008. This is the strongest, fis-2-specific
evidence for FIS-2 localization and anchors the core cellular component. The
cached record is abstract-only, so the localization figure is not quotable
here; the annotation is retained on the WormBase curator's IDA assignment.
action: ACCEPT
reason: >-
Direct experimental assay in C. elegans (WormBase IDA); the experimental basis
for FIS-2 mitochondrial localization.
- term:
id: GO:0006915
label: apoptotic process
evidence_type: IGI
original_reference_id: PMID:18722182
qualifier: involved_in
review:
summary: >-
The only individually demonstrated fis-2 function. Genetic-interaction (IGI)
evidence: fis-2 has a minor pro-apoptotic role, revealed in sensitized
genetic backgrounds, acting downstream of the CED-3 caspase and independently
of DRP-1 and CED-9 to promote elimination of mitochondria in dying cells and
facilitate cell-death execution. The effect is minor (fis-2 single mutants
show only small changes in cell-corpse numbers), so this is a genuine but
non-essential role.
action: ACCEPT
reason: >-
Experimentally supported, fis-2-specific role in cell-death execution (IGI
with ced-3). This is the best-characterized function of fis-2 and should be
retained.
supported_by:
- reference_id: PMID:18722182
supporting_text: >-
minor proapoptotic roles for drp-1 and fis-2, a homolog of human Fis1, are
revealed in sensitized genetic backgrounds
- reference_id: PMID:18722182
supporting_text: >-
reveal distinct roles for drp-1 and fis-2 as mediators of cell-death
execution downstream of caspase activation
- term:
id: GO:0000423
label: mitophagy
evidence_type: IGI
original_reference_id: PMID:24196833
qualifier: involved_in
review:
summary: >-
Proposed new annotation (not currently in GOA). Genetic loss of both FIS1
paralogs (the fis-1;fis-2 double mutant) disrupts the orderly disposal of
defective mitochondria: mitochondrial stress induces accumulation of large
LGG-1/LC3-positive autophagic aggregates containing mitochondrial remnants
and DRP-1, and these aggregates/mitophagosome spots are suppressed by drp-1,
mff, and pink-1 mutations. fis-2 is genetically part of this pathway
(drp-1 fis-1 fis-2 and pink-1 fis-1 fis-2 triple mutants). IMPORTANT: the
disposal phenotype was only demonstrated in the fis-1;fis-2 double, so fis-2's
contribution is redundant with fis-1, not shown to be fis-2-autonomous.
action: NEW
reason: >-
Captures the experimentally supported biological process in which fis-2
participates (coupling stress-induced fission to mitophagic disposal),
currently absent from GOA. Annotated as IGI (redundancy with fis-1) to reflect
that the phenotype requires loss of both paralogs.
supported_by:
- reference_id: PMID:24196833
supporting_text: >-
pink-1 single and pink-1 fis-1 fis-2 triple mutant animals had no colocalizing
spots, as expected for a complete block of mitophagy
- reference_id: PMID:24196833
supporting_text: >-
a drp-1 fis-1 fis-2 triple mutant strain also had reduced number and size of
aggregates when treated with Paraquat
core_functions:
- description: >-
FIS-2 is a tail-anchored mitochondrial outer membrane protein of the FIS1
family that functions in the disposal of mitochondria rather than in the core
fission reaction. Its individually demonstrated role is a minor pro-apoptotic
(cell-death execution) function: acting downstream of the CED-3 caspase and
independently of DRP-1 and CED-9, it promotes elimination of mitochondria in
dying cells. Redundantly with the paralog fis-1, it also contributes to the
orderly, PINK-1-dependent disposal of stress-damaged mitochondria downstream
of MFF/DRP-1-mediated fission. Its molecular activity is inferred, at the
family level only, to be that of a membrane adaptor/receptor.
molecular_function:
id: GO:0060090
label: molecular adaptor activity
directly_involved_in:
- id: GO:0006915
label: apoptotic process
- id: GO:0000423
label: mitophagy
locations:
- id: GO:0005741
label: mitochondrial outer membrane
supported_by:
- reference_id: PMID:18722182
supporting_text: >-
minor proapoptotic roles for drp-1 and fis-2, a homolog of human Fis1, are
revealed in sensitized genetic backgrounds
- reference_id: PMID:24196833
supporting_text: >-
pink-1 single and pink-1 fis-1 fis-2 triple mutant animals had no colocalizing
spots, as expected for a complete block of mitophagy
- reference_id: PMID:24196833
supporting_text: >-
Fis1 is part of the MAM complex and contributes to a late stage of the removal
process but is not required for entry of Drp1 into the MAM or fission
knowledge_gaps:
- gap_statement: >-
The molecular activity of FIS-2 is entirely undetermined experimentally. Its
only molecular-function annotation ("molecular adaptor activity") is a
phylogenetic (IBA) propagation from the FIS1 family; no C. elegans FIS-2
protein has been shown to bind DRP-1, a fission adaptor, lipid, or any other
partner, and no biochemical or structural study of worm FIS-2 exists.
boundary: >-
Established: FIS-2 is a FIS1-family tail-anchored protein of the mitochondrial
outer membrane (IDA mitochondrion; ISS/tail-anchor topology) that participates
genetically in mitochondrial disposal. Unknown: what FIS-2 actually does at the
molecular level - its direct binding partner(s) and the biochemical activity,
if any, beyond membrane anchoring.
gap_kind:
- BIOLOGY
dark_aspect: MF_DARK
status: OPEN
significance: >-
FIS1 has long been presumed a fission receptor; worm (and mammalian) data
reassign the family to mitochondrial quality-control roles whose mechanism is
unresolved. For the fis-2 paralog specifically, even the assumed adaptor
activity is untested, making it a genuinely dark molecular function relevant to
PINK1/Parkin quality-control biology.
provenance:
- reference_id: PMID:24196833
supporting_text: >-
Mff and Fis1 are not essential for fission or for Drp1 recruitment to
mitochondria in C. elegans
- gap_statement: >-
Whether FIS-2 has any non-redundant, fis-2-autonomous role in mitochondrial
disposal/mitophagy is unresolved. Every mitophagy/LGG-1-aggregate phenotype
was scored in the fis-1(tm1867); fis-2(gk414) double mutant (the "Fis1
mutant"), and both single mutants have wild-type mitochondrial morphology, so
the individual contribution of fis-2 to orderly disposal (versus complete
redundancy with, or dispensability relative to, fis-1) has not been measured.
boundary: >-
Established: the fis-1;fis-2 double mutant accumulates stress-induced LGG-1
aggregates and lies genetically downstream of MFF/DRP-1 and PINK-1. Unknown:
what a fis-2 single loss-of-function does to mitophagic flux, and whether fis-2
contributes anything the paralog fis-1 does not.
gap_kind:
- BIOLOGY
dark_aspect: RESIDUAL_SUBGAP
status: OPEN
significance: >-
Distinguishing redundant from specialized paralog functions is required before
fis-2 can be assigned a specific mitophagy role rather than a family-level one,
and determines whether fis-2 is a distinct quality-control node or a fis-1
backup.
provenance:
- reference_id: PMID:24196833
supporting_text: >-
Our results show that fis-1 and fis-2 single and double mutants have wild-type
mitochondrial morphologies, as also shown by others
- gap_statement: >-
The direct binding partners and interactome of C. elegans FIS-2 are unmapped.
It is unknown whether FIS-2 binds DRP-1 (directly or via an adaptor
intermediate analogous to yeast Mdv1/Caf4), whether it joins an
ER-mitochondria (MAM) fission/disposal complex as mammalian FIS1 does under
stress, and which downstream autophagy or apoptotic-machinery factors it
engages.
boundary: >-
Established (in mammals): stress induces a DRP-1-FIS1 co-immunoprecipitable
complex that also contains ER/MAM proteins. Unknown (for worm FIS-2): its
physical interactors, and whether the mammalian complex applies to this
paralog.
gap_kind:
- BIOLOGY
- CURATION
dark_aspect: MF_DARK
status: OPEN
provenance:
- reference_id: PMID:24196833
supporting_text: >-
Recruitment of Drp1 to mitochondria is mediated by proteins that are anchored
in the mitochondrial outer membrane
- gap_statement: >-
The mechanism and biological significance of the fis-2-specific pro-apoptotic
role are unknown. fis-2 promotes elimination of mitochondria in dying cells
downstream of CED-3 and independently of DRP-1/CED-9, but whether this uses the
same membrane machinery as its (redundant) mitophagy role, why the effect is
only detectable in sensitized backgrounds, and why this activity is
foregrounded for fis-2 but not fis-1, are all unresolved.
boundary: >-
Established: in sensitized backgrounds fis-2 has a minor, CED-3-dependent,
DRP-1/CED-9-independent pro-apoptotic effect on mitochondrial elimination.
Unknown: the molecular basis of this activity and its relationship to the
paralog-redundant mitophagy pathway.
gap_kind:
- BIOLOGY
dark_aspect: MF_DARK
status: OPEN
provenance:
- reference_id: PMID:18722182
supporting_text: >-
drp-1 and fis-2 function independent of one another and the Bcl-2 homolog
CED-9 and downstream of the CED-3 caspase to promote elimination of
mitochondria in dying cells
proposed_new_terms: []
suggested_questions:
- question: >-
Does a fis-2 single loss-of-function (independent of fis-1) measurably alter
mitophagic flux or mitochondrial quality control, or is fis-2 fully redundant
with fis-1?
- question: >-
Does C. elegans FIS-2 physically interact with DRP-1 or MAM/ER-mitochondria
components, and does it use an adaptor intermediate, as mammalian FIS1 does
under stress?
- question: >-
Do the two worm FIS1 paralogs partition functionally (fis-2 toward
cell-death-execution disposal, fis-1 toward UVC/mtDNA-damage removal), or are
they interchangeable?
suggested_experiments:
- hypothesis: >-
FIS-2 makes a distinct, non-redundant contribution to stress-induced mitophagy
that is masked by the paralog fis-1 in double-mutant analyses.
description: >-
Compare stage-resolved mitophagy flux (mito-Rosella / mtKeima or LGG-1 puncta
maturation) after Paraquat or antimycin A across wild-type, fis-2 single,
fis-1 single, and fis-1;fis-2 double mutants, with allele-specific rescue, to
isolate any fis-2-autonomous step.
- hypothesis: >-
Worm FIS-2 has direct or adaptor-mediated partners at the mitochondrial outer
membrane / ER-mitochondrial interface.
description: >-
Use proximity labeling (TurboID) or co-immunoprecipitation of endogenously
tagged FIS-2 from C. elegans under basal and mitochondrial-stress conditions to
identify DRP-1, MAM, and autophagy/apoptosis interactors and to test for
adaptor intermediates, comparing the FIS-2 and FIS-1 interactomes.