fis-2

UniProt ID: Q6AHP8
Organism: Caenorhabditis elegans
Review Status: DRAFT
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Gene Description

fis-2 (F13B9.8) is one of two Caenorhabditis elegans homologs of FIS1, a small (151 aa) tail-anchored protein of the mitochondrial outer membrane. Like other FIS1-family members it has a cytosol-facing tetratricopeptide-repeat (TPR) fold and a single C-terminal transmembrane helix that anchors it in the outer membrane with the TPR body exposed to the cytosol. The worm genome encodes a second FIS1 homolog, fis-1, with which fis-2 acts partly redundantly. In mammals and fungi FIS1 proteins are receptor/adaptor factors implicated in recruiting the dynamin-related GTPase DRP1 to the outer membrane during mitochondrial (and peroxisomal) fission. In C. elegans, however, loss of fis-2 (alone or together with fis-1) does not detectably impair mitochondrial or peroxisomal fission or morphology; the essential fission machinery is instead MFF/DRP-1. The functions demonstrated for fis-2 are downstream of, or parallel to, fission: it has a minor pro-apoptotic role in promoting the elimination of mitochondria in dying cells, acting downstream of the CED-3 caspase and independently of DRP-1 and CED-9, and it contributes (redundantly with fis-1) to the orderly disposal of damaged mitochondria, where loss of both paralogs causes stress-induced accumulation of large autophagic (LGG-1/LC3-positive) aggregates containing mitochondrial remnants. fis-2 is thus a mitochondrial outer membrane FIS1-family protein linked to mitochondrial quality control and cell-death execution rather than to the core fission reaction.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0008289 lipid binding
IBA
GO_REF:0000033
MARK AS OVER ANNOTATED
Summary: Family-level phylogenetic (IBA) inference of a generic "lipid binding" molecular function. There is no C. elegans-specific evidence that FIS-2 binds lipid; its C-terminal transmembrane helix mediates membrane anchoring, which is not the same as a lipid-binding molecular function. This is a weak, uninformative over-propagation for this gene.
Reason: No experimental support in worm; the informative molecular function inferred for FIS1-family proteins is adaptor/receptor activity (GO:0060090), not lipid binding. Membrane anchoring via the tail-anchor TM helix does not justify a lipid-binding MF.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
PANTHER:PTN000326738 · FIS1 family node SOURCE WEAK OR INFERRED
GO:0060090 molecular adaptor activity
IBA
GO_REF:0000033
ACCEPT
Summary: The most informative molecular-function term available for a FIS1-family protein: an outer-membrane receptor/adaptor that helps bring the fission GTPase DRP-1 into the fission/degradation machinery. Consistent with fis-2 being a tail-anchored mitochondrial outer membrane protein that acts within the DRP-1/MAM disposal machinery. Important caveat: this is entirely family-level inference — no worm FIS-2 protein has been shown to bind DRP-1, an adaptor, or any partner (see knowledge_gaps).
Reason: Best-supported and most informative MF term for this gene; consistent with the family function (Drp1 recruitment/adaptor). Retained as the representative molecular function while flagged as an MF-dark gap because it is undemonstrated for fis-2 specifically.
Supporting Evidence:
PMID:24196833
Recruitment of Drp1 to mitochondria is mediated by proteins that are anchored in the mitochondrial outer membrane
PMID:24196833
Fis1 is part of the MAM complex and contributes to a late stage of the removal process but is not required for entry of Drp1 into the MAM or fission
GO:0005741 mitochondrial outer membrane
IBA
GO_REF:0000033
ACCEPT
Summary: Mitochondrial outer membrane is the expected site of action for a FIS1-family tail-anchored protein and is consistent with the fis-2 IDA mitochondrion localization (PMID:18722182) and ISS from human FIS1. Accept as the core cellular component, recognizing that OM-resolution localization of worm fis-2 is inferred (homology + tail-anchor topology) rather than directly resolved.
Reason: Well-supported localization consistent with the family and with the experimental (IDA) mitochondrial annotation; core to FIS-2 function.
GO:0005778 peroxisomal membrane
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Peroxisomal membrane localization is inferred from mammalian/plant FIS1 homologs, which act in peroxisome fission. Plausible for worm fis-2 by homology but not directly demonstrated, and fis-1;fis-2 mutants have normal (punctate) peroxisomes. Retain as a non-core, homology-based localization.
Reason: No direct worm evidence for peroxisomal localization or a peroxisomal role; family-level propagation. Not a core function of C. elegans fis-2.
Supporting Evidence:
PMID:24196833
showing punctate peroxisomes in wild-type and Fis1 mutants
GO:0000266 mitochondrial fission
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Mitochondrial fission is the ancestral FIS1-family process, but in C. elegans loss of fis-2 (alone or with fis-1) does NOT impair mitochondrial fission or morphology, and Fis1 homologs are not essential for fission or DRP-1 recruitment (MFF/DRP-1 are the essential factors). Retain as non-core: fis-2 belongs to the fission machinery at the family level but is not required for fission in worm.
Reason: Defensible at the family level, but loss-of-function is phenotypically silent for fission in worm; this is not the core, essential fission determinant.
Supporting Evidence:
PMID:24196833
Our results show that fis-1 and fis-2 single and double mutants have wild-type mitochondrial morphologies, as also shown by others
PMID:24196833
Mff and Fis1 are not essential for fission or for Drp1 recruitment to mitochondria in C. elegans
GO:0016559 peroxisome fission
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Peroxisome fission is a documented FIS1 function in mammals and plants, but in C. elegans fis-1;fis-2 mutants have normal punctate peroxisomes and only Mff/Drp1 loss produces tubular (fission-defective) peroxisomes. Family-level propagation not supported by direct worm evidence; retain as non-core.
Reason: No demonstrated peroxisome-fission role for worm fis-2; the worm data show normal peroxisomes in Fis1 mutants. Keep as homology-based, non-core.
Propagation Review
Root cause: PROPAGATION BAD
Failure modes: FUNCTIONAL DIVERGENCE
Sources checked:
PANTHER:PTN000326738 · FIS1 family node SUPPORTS SOURCE BUT NOT TARGET
Supporting Evidence:
PMID:24196833
showing punctate peroxisomes in wild-type and Fis1 mutants and tubular peroxisomes in drp-1 mutant and Mff double mutants
GO:0000266 mitochondrial fission
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: Electronic InterPro2GO mapping of the Fis1 domain (IPR016543) to mitochondrial fission. Same considerations as the IBA mitochondrial-fission annotation: defensible at the family/domain level but not the core essential fission role in worm.
Reason: Redundant with the IBA mitochondrial-fission annotation; family/domain-level inference. Non-core given the loss-of-function-silent fission phenotype in worm.
GO:0005739 mitochondrion
IEA
GO_REF:0000120
ACCEPT
Summary: Automated electronic annotation to the mitochondrion. Correct and corroborated by the direct experimental (IDA) mitochondrial localization from PMID:18722182 and by ISS from human FIS1.
Reason: Well-supported core localization; consistent with the experimental IDA annotation.
GO:0005741 mitochondrial outer membrane
IEA
GO_REF:0000044
ACCEPT
Summary: UniProt subcellular-location mapping to mitochondrial outer membrane, consistent with the FIS1 tail-anchor topology and ISS from human FIS1.
Reason: Well-supported core localization; redundant with the ISS annotation and consistent with the experimental mitochondrial localization.
GO:0005778 peroxisomal membrane
IEA
GO_REF:0000044
KEEP AS NON CORE
Summary: UniProt subcellular-location mapping to peroxisomal membrane, transferred from the mammalian FIS1 dual localization. Not directly shown in worm; non-core.
Reason: Homology-based peroxisomal localization; no direct C. elegans evidence. Retain as non-core.
GO:0005741 mitochondrial outer membrane
ISS
GO_REF:0000024
ACCEPT
Summary: ISS transfer of mitochondrial outer membrane localization from human FIS1 (Q9Y3D6). Consistent with the fis-2 IDA mitochondrial localization and the tail-anchor topology.
Reason: Well-supported core localization; consistent with experimental worm data.
GO:0005778 peroxisomal membrane
ISS
GO_REF:0000024
KEEP AS NON CORE
Summary: ISS transfer of peroxisomal membrane localization from human FIS1. Plausible by homology but not demonstrated in worm; non-core.
Reason: Homology-based; no direct worm evidence for peroxisomal localization.
GO:0036498 IRE1-mediated unfolded protein response
HEP
PMID:16184190
Genetic interactions due to constitutive and inducible gene ...
KEEP AS NON CORE
Summary: High-throughput expression-profiling (HEP) annotation: fis-2 (F13B9.8) was identified as a UPR-regulated gene in a genome-wide microarray study of the C. elegans unfolded protein response. This reflects transcriptional co-regulation of fis-2 with the IRE1/XBP-1 UPR, not a demonstrated functional role of fis-2 within the UPR pathway. fis-2 is not named in the paper's text (the evidence is in supplementary tables), so no verbatim supporting quote is available.
Reason: Expression-based (HEP) association only; being a UPR target gene does not establish that fis-2 acts in the UPR. Retain as a peripheral, non-core annotation reflecting transcriptional responsiveness, not core function.
GO:0005739 mitochondrion
IDA
PMID:18722182
Caenorhabditis elegans drp-1 and fis-2 regulate distinct cel...
ACCEPT
Summary: Direct experimental (IDA) mitochondrial localization of FIS-2 curated by WormBase from Breckenridge et al. 2008. This is the strongest, fis-2-specific evidence for FIS-2 localization and anchors the core cellular component. The cached record is abstract-only, so the localization figure is not quotable here; the annotation is retained on the WormBase curator's IDA assignment.
Reason: Direct experimental assay in C. elegans (WormBase IDA); the experimental basis for FIS-2 mitochondrial localization.
GO:0006915 apoptotic process
IGI
PMID:18722182
Caenorhabditis elegans drp-1 and fis-2 regulate distinct cel...
ACCEPT
Summary: The only individually demonstrated fis-2 function. Genetic-interaction (IGI) evidence: fis-2 has a minor pro-apoptotic role, revealed in sensitized genetic backgrounds, acting downstream of the CED-3 caspase and independently of DRP-1 and CED-9 to promote elimination of mitochondria in dying cells and facilitate cell-death execution. The effect is minor (fis-2 single mutants show only small changes in cell-corpse numbers), so this is a genuine but non-essential role.
Reason: Experimentally supported, fis-2-specific role in cell-death execution (IGI with ced-3). This is the best-characterized function of fis-2 and should be retained.
Supporting Evidence:
PMID:18722182
minor proapoptotic roles for drp-1 and fis-2, a homolog of human Fis1, are revealed in sensitized genetic backgrounds
PMID:18722182
reveal distinct roles for drp-1 and fis-2 as mediators of cell-death execution downstream of caspase activation
GO:0000423 mitophagy
IGI
PMID:24196833
Mutations in Fis1 disrupt orderly disposal of defective mito...
NEW
Summary: Proposed new annotation (not currently in GOA). Genetic loss of both FIS1 paralogs (the fis-1;fis-2 double mutant) disrupts the orderly disposal of defective mitochondria: mitochondrial stress induces accumulation of large LGG-1/LC3-positive autophagic aggregates containing mitochondrial remnants and DRP-1, and these aggregates/mitophagosome spots are suppressed by drp-1, mff, and pink-1 mutations. fis-2 is genetically part of this pathway (drp-1 fis-1 fis-2 and pink-1 fis-1 fis-2 triple mutants). IMPORTANT: the disposal phenotype was only demonstrated in the fis-1;fis-2 double, so fis-2's contribution is redundant with fis-1, not shown to be fis-2-autonomous.
Reason: Captures the experimentally supported biological process in which fis-2 participates (coupling stress-induced fission to mitophagic disposal), currently absent from GOA. Annotated as IGI (redundancy with fis-1) to reflect that the phenotype requires loss of both paralogs.
Supporting Evidence:
PMID:24196833
pink-1 single and pink-1 fis-1 fis-2 triple mutant animals had no colocalizing spots, as expected for a complete block of mitophagy
PMID:24196833
a drp-1 fis-1 fis-2 triple mutant strain also had reduced number and size of aggregates when treated with Paraquat

Core Functions

FIS-2 is a tail-anchored mitochondrial outer membrane protein of the FIS1 family that functions in the disposal of mitochondria rather than in the core fission reaction. Its individually demonstrated role is a minor pro-apoptotic (cell-death execution) function: acting downstream of the CED-3 caspase and independently of DRP-1 and CED-9, it promotes elimination of mitochondria in dying cells. Redundantly with the paralog fis-1, it also contributes to the orderly, PINK-1-dependent disposal of stress-damaged mitochondria downstream of MFF/DRP-1-mediated fission. Its molecular activity is inferred, at the family level only, to be that of a membrane adaptor/receptor.

Molecular Function:
molecular adaptor activity
Directly Involved In:
Cellular Locations:
Supporting Evidence:
  • PMID:18722182
    minor proapoptotic roles for drp-1 and fis-2, a homolog of human Fis1, are revealed in sensitized genetic backgrounds
  • PMID:24196833
    pink-1 single and pink-1 fis-1 fis-2 triple mutant animals had no colocalizing spots, as expected for a complete block of mitophagy
  • PMID:24196833
    Fis1 is part of the MAM complex and contributes to a late stage of the removal process but is not required for entry of Drp1 into the MAM or fission

References

Gene Ontology annotation through association of InterPro records with GO terms
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Combined Automated Annotation using Multiple IEA Methods
Genetic interactions due to constitutive and inducible gene regulation mediated by the unfolded protein response in C. elegans.
  • A genome-wide C. elegans UPR microarray study. fis-2 (F13B9.8) is not named in the abstract or main text; its identification as a UPR-regulated gene is in the supplementary microarray tables, which is the basis of the WormBase HEP annotation to IRE1-mediated UPR.
Caenorhabditis elegans drp-1 and fis-2 regulate distinct cell-death execution pathways downstream of ced-3 and independent of ced-9.
  • fis-2 (a homolog of human Fis1) has a minor pro-apoptotic role revealed in sensitized genetic backgrounds, acting downstream of the CED-3 caspase and independently of DRP-1 and CED-9 to promote elimination of mitochondria in dying cells.
    "minor proapoptotic roles for drp-1 and fis-2, a homolog of human Fis1, are revealed in sensitized genetic backgrounds"
Mutations in Fis1 disrupt orderly disposal of defective mitochondria.
  • C. elegans fis-2 single and fis-1;fis-2 double mutants have wild-type mitochondrial (and peroxisomal) morphology; Fis1 homologs are not essential for fission or for DRP-1 recruitment, unlike MFF/DRP-1.
    "Our results show that fis-1 and fis-2 single and double mutants have wild-type mitochondrial morphologies, as also shown by others"
  • Loss of both FIS1 paralogs (the fis-1;fis-2 "Fis1" double mutant) causes stress-induced accumulation of large LGG-1 autophagic aggregates containing mitochondrial remnants and DRP-1; drp-1 fis-1 fis-2 and pink-1 fis-1 fis-2 triple mutants place fis-2 genetically in the mitophagic disposal pathway downstream of DRP-1/MFF and PINK-1.
    "pink-1 single and pink-1 fis-1 fis-2 triple mutant animals had no colocalizing spots, as expected for a complete block of mitophagy"

Suggested Questions for Experts

Q: Does a fis-2 single loss-of-function (independent of fis-1) measurably alter mitophagic flux or mitochondrial quality control, or is fis-2 fully redundant with fis-1?

Q: Does C. elegans FIS-2 physically interact with DRP-1 or MAM/ER-mitochondria components, and does it use an adaptor intermediate, as mammalian FIS1 does under stress?

Q: Do the two worm FIS1 paralogs partition functionally (fis-2 toward cell-death-execution disposal, fis-1 toward UVC/mtDNA-damage removal), or are they interchangeable?

Suggested Experiments

Experiment: Compare stage-resolved mitophagy flux (mito-Rosella / mtKeima or LGG-1 puncta maturation) after Paraquat or antimycin A across wild-type, fis-2 single, fis-1 single, and fis-1;fis-2 double mutants, with allele-specific rescue, to isolate any fis-2-autonomous step.

Hypothesis: FIS-2 makes a distinct, non-redundant contribution to stress-induced mitophagy that is masked by the paralog fis-1 in double-mutant analyses.

Experiment: Use proximity labeling (TurboID) or co-immunoprecipitation of endogenously tagged FIS-2 from C. elegans under basal and mitochondrial-stress conditions to identify DRP-1, MAM, and autophagy/apoptosis interactors and to test for adaptor intermediates, comparing the FIS-2 and FIS-1 interactomes.

Hypothesis: Worm FIS-2 has direct or adaptor-mediated partners at the mitochondrial outer membrane / ER-mitochondrial interface.

Knowledge Gaps

What is not known — curated, literature-grounded statements of the open unknowns (the inverse of core functions).

Gap: The molecular activity of FIS-2 is entirely undetermined experimentally. Its only molecular-function annotation ("molecular adaptor activity") is a phylogenetic (IBA) propagation from the FIS1 family; no C. elegans FIS-2 protein has been shown to bind DRP-1, a fission adaptor, lipid, or any other partner, and no biochemical or structural study of worm FIS-2 exists.

OPEN BIOLOGY MF_DARK

What is known: Established: FIS-2 is a FIS1-family tail-anchored protein of the mitochondrial outer membrane (IDA mitochondrion; ISS/tail-anchor topology) that participates genetically in mitochondrial disposal. Unknown: what FIS-2 actually does at the molecular level - its direct binding partner(s) and the biochemical activity, if any, beyond membrane anchoring.

Significance: FIS1 has long been presumed a fission receptor; worm (and mammalian) data reassign the family to mitochondrial quality-control roles whose mechanism is unresolved. For the fis-2 paralog specifically, even the assumed adaptor activity is untested, making it a genuinely dark molecular function relevant to PINK1/Parkin quality-control biology.

Provenance (the field's own admissions):

Gap: Whether FIS-2 has any non-redundant, fis-2-autonomous role in mitochondrial disposal/mitophagy is unresolved. Every mitophagy/LGG-1-aggregate phenotype was scored in the fis-1(tm1867); fis-2(gk414) double mutant (the "Fis1 mutant"), and both single mutants have wild-type mitochondrial morphology, so the individual contribution of fis-2 to orderly disposal (versus complete redundancy with, or dispensability relative to, fis-1) has not been measured.

OPEN BIOLOGY RESIDUAL_SUBGAP

What is known: Established: the fis-1;fis-2 double mutant accumulates stress-induced LGG-1 aggregates and lies genetically downstream of MFF/DRP-1 and PINK-1. Unknown: what a fis-2 single loss-of-function does to mitophagic flux, and whether fis-2 contributes anything the paralog fis-1 does not.

Significance: Distinguishing redundant from specialized paralog functions is required before fis-2 can be assigned a specific mitophagy role rather than a family-level one, and determines whether fis-2 is a distinct quality-control node or a fis-1 backup.

Provenance (the field's own admissions):

Gap: The direct binding partners and interactome of C. elegans FIS-2 are unmapped. It is unknown whether FIS-2 binds DRP-1 (directly or via an adaptor intermediate analogous to yeast Mdv1/Caf4), whether it joins an ER-mitochondria (MAM) fission/disposal complex as mammalian FIS1 does under stress, and which downstream autophagy or apoptotic-machinery factors it engages.

OPEN BIOLOGYCURATION MF_DARK

What is known: Established (in mammals): stress induces a DRP-1-FIS1 co-immunoprecipitable complex that also contains ER/MAM proteins. Unknown (for worm FIS-2): its physical interactors, and whether the mammalian complex applies to this paralog.

Provenance (the field's own admissions):

Gap: The mechanism and biological significance of the fis-2-specific pro-apoptotic role are unknown. fis-2 promotes elimination of mitochondria in dying cells downstream of CED-3 and independently of DRP-1/CED-9, but whether this uses the same membrane machinery as its (redundant) mitophagy role, why the effect is only detectable in sensitized backgrounds, and why this activity is foregrounded for fis-2 but not fis-1, are all unresolved.

OPEN BIOLOGY MF_DARK

What is known: Established: in sensitized backgrounds fis-2 has a minor, CED-3-dependent, DRP-1/CED-9-independent pro-apoptotic effect on mitochondrial elimination. Unknown: the molecular basis of this activity and its relationship to the paralog-redundant mitophagy pathway.

Provenance (the field's own admissions):

📚 Additional Documentation

Notes

(fis-2-notes.md)

fis-2 (C. elegans) — Gene Review Notes

UniProt: Q6AHP8 (FIS12_CAEEL); WormBase F13B9.8 / WBGene00001425; ORF F13B9.8; Chromosome X.
Human ortholog: FIS1 (Q9Y3D6). Paralog in worm: fis-1 (Q20291, WBGene00001424) — a first FIS1
homologue reviewed separately (PR #1672, merged). Part of the flagship
projects/CAEEL_MITOPHAGY.md project.

151 aa tail-anchored protein: cytosol-facing TPR-fold body (CDD cd12212 Fis1; Pfam PF14852
Fis1_TPR_N + PF14853 Fis1_TPR_C) + a single C-terminal transmembrane helix (UniProt FT
TRANSMEM 126..146) that anchors it in the mitochondrial outer membrane. Belongs to the FIS1
family (PIRSF008835; PANTHER PTHR13247:SF0). PE 3: Inferred from homology (no experimental
protein-level evidence beyond localization/genetics).

Deep research provenance

Falcon deep research (just deep-research-falcon worm fis-2 --fallback perplexity-lite) was
attempted TWICE. Both runs timed out after the built-in 600 s falcon limit under heavy
concurrent Edison load (multiple sibling worktrees were simultaneously running falcon jobs for
other worm genes), and the perplexity-lite fallback failed with an HTTP 401
insufficient_quota error on both attempts. No fis-2-deep-research-falcon.md (or
perplexity-lite) file was produced, so none is committed (never fabricate a -deep-research-*
file). This review is therefore grounded directly in UniProt (Q6AHP8), GOA (15 annotations),
and cached primary literature. Critically, the one paper that directly characterises worm
fis-2 loss-of-function (PMID:24196833, full text cached) and the paper that reports a
fis-2-specific apoptotic phenotype (PMID:18722182, ABSTRACT-ONLY in cache) were both read
directly, so every existing annotation could be adjudicated without an UNDECIDED call.

Provenance sources

  • UniProt Q6AHP8 record (fis-2-uniprot.txt)
  • GOA (fis-2-goa.tsv) — 15 annotations
  • Primary literature (cached):
  • PMID:24196833 Shen et al. 2014 Mol Biol Cell — "Mutations in Fis1 disrupt orderly disposal
    of defective mitochondria" (FULL TEXT). Directly studies C. elegans fis-1/fis-2 using the
    fis-1(tm1867); fis-2(gk414) double mutant (referred to throughout as the "Fis1 mutant") plus
    drp-1 fis-1 fis-2 and pink-1 fis-1 fis-2 triple mutants.
  • PMID:18722182 Breckenridge et al. 2008 Mol Cell — "C. elegans drp-1 and fis-2 regulate
    distinct cell-death execution pathways downstream of ced-3 and independent of ced-9"
    (ABSTRACT ONLY in cache; abstract explicitly foregrounds fis-2). Source of the fis-2 IDA
    mitochondrion localization and the fis-2 IGI apoptosis annotation.
  • PMID:16184190 Shen et al. 2005 PLoS Genet — C. elegans UPR microarray study (FULL TEXT).
    fis-2 (F13B9.8) is NOT named in the abstract/main text; the HEP annotation
    (GO:0036498, IRE1-mediated UPR) derives from supplementary microarray tables where fis-2
    scored as a UPR-regulated (target) gene. No verbatim fis-2 quote is available from this
    paper.

KNOWN (well supported)

Localization: mitochondrion / mitochondrial outer membrane (KNOWN for fis-2)

  • Direct experimental (IDA) mitochondrial localization was assigned by WormBase from
    PMID:18722182 (UniProt: "SUBCELLULAR LOCATION: ... Mitochondrion
    {ECO:0000269|PubMed:18722182}"). The cached abstract does not restate the localization
    (full text has the fis-2::GFP data); defer to the WB curator for the IDA.
  • Outer-membrane sub-localization is by ISS from human FIS1 (Q9Y3D6) and by the tail-anchor
    topology (UniProt DOMAIN: "The C-terminus is required for mitochondrial or peroxisomal
    localization, while the N-terminus is necessary for mitochondrial or peroxisomal fission").
    This is family-level / homology-based for worm fis-2, not directly demonstrated at OM
    resolution. Peroxisomal-membrane localization is purely ISS/IBA from mammalian/plant FIS1.

fis-2-specific role: minor pro-apoptotic / cell-death-execution function (KNOWN, minor)

  • This is the ONLY function experimentally demonstrated for fis-2 individually.
    PMID:18722182
  • Acts downstream of the CED-3 caspase, independent of drp-1 and of CED-9, to eliminate
    mitochondria in dying cells.
    PMID:18722182
    PMID:18722182
  • Basis of the GOA IGI GO:0006915 apoptotic process annotation (genetic interaction with ced-3,
    WB:WBGene00000423). Note: minor, only in sensitized backgrounds; the fis-2 single mutant has
    only "minor" effects on cell corpses (UniProt DISRUPTION PHENOTYPE from PMID:18722182).

Redundant role in orderly disposal of defective mitochondria / mitophagy (KNOWN, but only via the double mutant)

  • In PMID:24196833 the "Fis1 mutant" is the fis-1(tm1867); fis-2(gk414) double.
    PMID:24196833
  • The double mutant accumulates large LGG-1 (worm LC3) autophagic aggregates containing
    mitochondrial remnants and DRP-1 under mitochondrial stress.
    PMID:24196833
  • fis-2 is genetically part of the disposal pathway: a drp-1 fis-1 fis-2 triple mutant suppresses
    the aggregates, and a pink-1 fis-1 fis-2 triple mutant abolishes mitophagosome spots.
    PMID:24196833
    PMID:24196833
  • Model (family level, largely mammalian coIP): FIS1 is a MOM factor in the DRP-1/MAM fission
    complex acting at a late disposal step.
    PMID:24196833

NOT known / important negatives

fis-2 is NOT required for mitochondrial fission in C. elegans (fis-2-specific negative)

  • The fis-2 SINGLE mutant (and the fis-1;fis-2 double) has wild-type mitochondrial morphology.
    PMID:24196833
  • Fis1 homologues are not essential for fission or for DRP-1 recruitment in worm (Mff is the
    relevant recruiter; drp-1 the essential mechanochemical GTPase).
    PMID:24196833
  • So the family-propagated GO:0000266 mitochondrial fission (IBA + IEA) is defensible only at
    the family/machinery level; it is NOT the core essential fission role in worm → non-core.

fis-2 is NOT required for peroxisome fission in C. elegans (negative)

  • Fis1 mutants (= fis-1;fis-2 double) have normal punctate peroxisomes; only Mff/Drp1 loss gives
    tubular (fission-defective) peroxisomes.
    PMID:24196833
  • GO:0016559 peroxisome fission (IBA) and GO:0005778 peroxisomal membrane (IBA/ISS/IEA) are
    family-level propagations with no direct worm support → non-core.

lipid binding (GO:0008289, IBA) — weakly supported

  • No worm fis-2 evidence for lipid binding. The C-terminal TM helix mediates membrane anchoring,
    which is not a "lipid binding" molecular function. Generic family-level over-propagation →
    over-annotated.

molecular adaptor activity (GO:0060090, IBA) — best available MF, but undemonstrated for fis-2

  • Assigned purely by phylogenetic propagation from the FIS1 family. It is the most informative
    MF term available and is consistent with fis-2 being a tail-anchored MOM protein in the
    fission/disposal machinery, but NO worm fis-2 protein has been shown to bind DRP-1, an
    adaptor, or any partner. Accept as the representative MF, but flag as an MF-dark knowledge gap.

Difference from the fis-1 paralog (why fis-2 needs its own evidence)

  • fis-1 review concluded fis-1 is dispensable for fission and acts (redundantly with fis-2) in
    orderly mitochondrial disposal; its individually demonstrated data were localization
    (YFP::FIS-1 as OM marker, PMID:21248201) and the UVC/mtDNA-damage-removal role
    (fis-1 RNAi, PMID:24058863).
  • fis-2's individually demonstrated datum is different: the minor pro-apoptotic / cell-death
    execution role (PMID:18722182, Breckenridge — which foregrounds fis-2, not fis-1). The
    mitophagy/LGG-1 disposal phenotype (PMID:24196833) was only ever scored in the fis-1;fis-2
    DOUBLE mutant, so it demonstrates a redundant contribution, not an fis-2-autonomous role.
  • Open question: do the two paralogs partition (fis-2 → apoptotic disposal per Breckenridge;
    fis-1 → UVC/mtDNA damage removal per Bess/Shen; both → stress mitophagy), or are they fully
    interchangeable? Not resolved in the literature.

Unknowns (candidate knowledge gaps — the point for a dark paralog)

  1. MF-dark: the molecular activity of fis-2 is entirely inferred. "Molecular adaptor activity"
    is a family-level IBA; there is no worm fis-2 binding/biochemical data at all.
  2. Whether fis-2 has ANY non-redundant function distinct from fis-1 is unresolved: the disposal
    phenotype requires loss of BOTH paralogs (double mutant), and both single mutants have normal
    mitochondrial morphology. fis-2's autonomous contribution to mitophagy is undetermined.
  3. fis-2's interactome is unmapped: no worm data on whether fis-2 binds DRP-1 (directly or via an
    adaptor), participates in a MAM/ER-mitochondria complex, or what distinguishes it from fis-1.
  4. The mechanism and physiological significance of the minor, sensitized-background pro-apoptotic
    role, and whether it reflects the same disposal machinery acting in dying cells, is unknown.

Curation decisions summary (see fis-2-ai-review.yaml)

  • ACCEPT (core/representative): GO:0060090 molecular adaptor activity (IBA, best MF, flagged
    MF-dark); GO:0005739 mitochondrion (IDA, fis-2-specific); GO:0005741 mitochondrial outer
    membrane (ISS, IEA-SubCell); GO:0005739 mitochondrion (IEA); GO:0006915 apoptotic process
    (IGI, the one demonstrated fis-2-specific function).
  • KEEP_AS_NON_CORE: GO:0000266 mitochondrial fission (IBA, IEA); GO:0005741 mito OM (IBA
    is_active_in); GO:0005778 peroxisomal membrane (IBA/ISS/IEA); GO:0016559 peroxisome fission
    (IBA); GO:0036498 IRE1-mediated UPR (HEP, expression-only).
  • MARK_AS_OVER_ANNOTATED: GO:0008289 lipid binding (IBA).
  • NEW (proposed): GO:0000423 mitophagy (IGI, redundant with fis-1; only shown in the double
    mutant) — flagged as redundant, not fis-2-autonomous.

📄 View Raw YAML

id: Q6AHP8
gene_symbol: fis-2
product_type: PROTEIN
status: DRAFT
taxon:
  id: NCBITaxon:6239
  label: Caenorhabditis elegans
description: >-
  fis-2 (F13B9.8) is one of two Caenorhabditis elegans homologs of FIS1, a small
  (151 aa) tail-anchored protein of the mitochondrial outer membrane. Like other
  FIS1-family members it has a cytosol-facing tetratricopeptide-repeat (TPR) fold
  and a single C-terminal transmembrane helix that anchors it in the outer
  membrane with the TPR body exposed to the cytosol. The worm genome encodes a
  second FIS1 homolog, fis-1, with which fis-2 acts partly redundantly. In
  mammals and fungi FIS1 proteins are receptor/adaptor factors implicated in
  recruiting the dynamin-related GTPase DRP1 to the outer membrane during
  mitochondrial (and peroxisomal) fission. In C. elegans, however, loss of fis-2
  (alone or together with fis-1) does not detectably impair mitochondrial or
  peroxisomal fission or morphology; the essential fission machinery is instead
  MFF/DRP-1. The functions demonstrated for fis-2 are downstream of, or parallel
  to, fission: it has a minor pro-apoptotic role in promoting the elimination of
  mitochondria in dying cells, acting downstream of the CED-3 caspase and
  independently of DRP-1 and CED-9, and it contributes (redundantly with fis-1)
  to the orderly disposal of damaged mitochondria, where loss of both paralogs
  causes stress-induced accumulation of large autophagic (LGG-1/LC3-positive)
  aggregates containing mitochondrial remnants. fis-2 is thus a mitochondrial
  outer membrane FIS1-family protein linked to mitochondrial quality control and
  cell-death execution rather than to the core fission reaction.
references:
- id: GO_REF:0000002
  title: Gene Ontology annotation through association of InterPro records with GO
    terms
  findings: []
- id: GO_REF:0000024
  title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
    by curator judgment of sequence similarity
  findings: []
- id: GO_REF:0000033
  title: Annotation inferences using phylogenetic trees
  findings: []
- id: GO_REF:0000044
  title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
    vocabulary mapping, accompanied by conservative changes to GO terms applied by
    UniProt
  findings: []
- id: GO_REF:0000120
  title: Combined Automated Annotation using Multiple IEA Methods
  findings: []
- id: PMID:16184190
  title: Genetic interactions due to constitutive and inducible gene regulation mediated
    by the unfolded protein response in C. elegans.
  findings:
  - statement: >-
      A genome-wide C. elegans UPR microarray study. fis-2 (F13B9.8) is not named
      in the abstract or main text; its identification as a UPR-regulated gene is
      in the supplementary microarray tables, which is the basis of the WormBase
      HEP annotation to IRE1-mediated UPR.
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: >-
      PMC full text confirmed (full_text_available: true). This is a
      transcriptional-profiling study of the C. elegans UPR; fis-2 appears only as
      a high-throughput expression-profiling (HEP) target in supplementary data.
      No verbatim fis-2 quote is available. Supports at most that fis-2 mRNA is
      UPR-responsive, not that fis-2 functions in the UPR; used to justify a
      non-core, expression-based annotation only.
- id: PMID:18722182
  title: Caenorhabditis elegans drp-1 and fis-2 regulate distinct cell-death execution
    pathways downstream of ced-3 and independent of ced-9.
  findings:
  - statement: >-
      fis-2 (a homolog of human Fis1) has a minor pro-apoptotic role revealed in
      sensitized genetic backgrounds, acting downstream of the CED-3 caspase and
      independently of DRP-1 and CED-9 to promote elimination of mitochondria in
      dying cells.
    supporting_text: >-
      minor proapoptotic roles for drp-1 and fis-2, a homolog of human Fis1, are
      revealed in sensitized genetic backgrounds
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      Cached record is abstract-only (full_text_available: false). The abstract
      directly foregrounds fis-2 and is the source of the fis-2-specific IGI
      apoptosis annotation and (via full text not in cache) the IDA mitochondrion
      localization curated by WormBase. This is the ONLY paper demonstrating an
      individual (fis-2 single-gene) loss-of-function phenotype for fis-2.
- id: PMID:24196833
  title: Mutations in Fis1 disrupt orderly disposal of defective mitochondria.
  findings:
  - statement: >-
      C. elegans fis-2 single and fis-1;fis-2 double mutants have wild-type
      mitochondrial (and peroxisomal) morphology; Fis1 homologs are not essential
      for fission or for DRP-1 recruitment, unlike MFF/DRP-1.
    supporting_text: >-
      Our results show that fis-1 and fis-2 single and double mutants have wild-type
      mitochondrial morphologies, as also shown by others
  - statement: >-
      Loss of both FIS1 paralogs (the fis-1;fis-2 "Fis1" double mutant) causes
      stress-induced accumulation of large LGG-1 autophagic aggregates containing
      mitochondrial remnants and DRP-1; drp-1 fis-1 fis-2 and pink-1 fis-1 fis-2
      triple mutants place fis-2 genetically in the mitophagic disposal pathway
      downstream of DRP-1/MFF and PINK-1.
    supporting_text: >-
      pink-1 single and pink-1 fis-1 fis-2 triple mutant animals had no colocalizing
      spots, as expected for a complete block of mitophagy
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      PMC full text confirmed. Directly characterizes C. elegans fis-2 using the
      fis-1(tm1867); fis-2(gk414) double mutant (called the "Fis1 mutant"
      throughout) plus drp-1 fis-1 fis-2 and pink-1 fis-1 fis-2 triple mutants.
      Establishes that fis-2 is dispensable for fission and contributes REDUNDANTLY
      (only demonstrated in the double mutant) to orderly disposal of defective
      mitochondria. Not in the GOA seed set; added here because it is the primary
      loss-of-function characterization of worm fis-2.
existing_annotations:
- term:
    id: GO:0008289
    label: lipid binding
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: enables
  review:
    summary: >-
      Family-level phylogenetic (IBA) inference of a generic "lipid binding"
      molecular function. There is no C. elegans-specific evidence that FIS-2 binds
      lipid; its C-terminal transmembrane helix mediates membrane anchoring, which
      is not the same as a lipid-binding molecular function. This is a weak,
      uninformative over-propagation for this gene.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      No experimental support in worm; the informative molecular function inferred
      for FIS1-family proteins is adaptor/receptor activity (GO:0060090), not lipid
      binding. Membrane anchoring via the tail-anchor TM helix does not justify a
      lipid-binding MF.
    propagation_review:
      root_cause: TERM_SCOPING_PROBLEM
      failure_modes:
      - GRANULARITY_MISMATCH
      source_entities:
      - source_id: PANTHER:PTN000326738
        source_label: FIS1 family node
        source_status: SOURCE_WEAK_OR_INFERRED
- term:
    id: GO:0060090
    label: molecular adaptor activity
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: enables
  review:
    summary: >-
      The most informative molecular-function term available for a FIS1-family
      protein: an outer-membrane receptor/adaptor that helps bring the fission
      GTPase DRP-1 into the fission/degradation machinery. Consistent with fis-2
      being a tail-anchored mitochondrial outer membrane protein that acts within
      the DRP-1/MAM disposal machinery. Important caveat: this is entirely
      family-level inference — no worm FIS-2 protein has been shown to bind DRP-1,
      an adaptor, or any partner (see knowledge_gaps).
    action: ACCEPT
    reason: >-
      Best-supported and most informative MF term for this gene; consistent with
      the family function (Drp1 recruitment/adaptor). Retained as the representative
      molecular function while flagged as an MF-dark gap because it is undemonstrated
      for fis-2 specifically.
    supported_by:
    - reference_id: PMID:24196833
      supporting_text: >-
        Recruitment of Drp1 to mitochondria is mediated by proteins that are anchored
        in the mitochondrial outer membrane
    - reference_id: PMID:24196833
      supporting_text: >-
        Fis1 is part of the MAM complex and contributes to a late stage of the removal
        process but is not required for entry of Drp1 into the MAM or fission
- term:
    id: GO:0005741
    label: mitochondrial outer membrane
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: is_active_in
  review:
    summary: >-
      Mitochondrial outer membrane is the expected site of action for a FIS1-family
      tail-anchored protein and is consistent with the fis-2 IDA mitochondrion
      localization (PMID:18722182) and ISS from human FIS1. Accept as the core
      cellular component, recognizing that OM-resolution localization of worm fis-2
      is inferred (homology + tail-anchor topology) rather than directly resolved.
    action: ACCEPT
    reason: >-
      Well-supported localization consistent with the family and with the
      experimental (IDA) mitochondrial annotation; core to FIS-2 function.
- term:
    id: GO:0005778
    label: peroxisomal membrane
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: is_active_in
  review:
    summary: >-
      Peroxisomal membrane localization is inferred from mammalian/plant FIS1
      homologs, which act in peroxisome fission. Plausible for worm fis-2 by
      homology but not directly demonstrated, and fis-1;fis-2 mutants have normal
      (punctate) peroxisomes. Retain as a non-core, homology-based localization.
    action: KEEP_AS_NON_CORE
    reason: >-
      No direct worm evidence for peroxisomal localization or a peroxisomal role;
      family-level propagation. Not a core function of C. elegans fis-2.
    supported_by:
    - reference_id: PMID:24196833
      supporting_text: showing punctate peroxisomes in wild-type and Fis1 mutants
- term:
    id: GO:0000266
    label: mitochondrial fission
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: involved_in
  review:
    summary: >-
      Mitochondrial fission is the ancestral FIS1-family process, but in C. elegans
      loss of fis-2 (alone or with fis-1) does NOT impair mitochondrial fission or
      morphology, and Fis1 homologs are not essential for fission or DRP-1
      recruitment (MFF/DRP-1 are the essential factors). Retain as non-core: fis-2
      belongs to the fission machinery at the family level but is not required for
      fission in worm.
    action: KEEP_AS_NON_CORE
    reason: >-
      Defensible at the family level, but loss-of-function is phenotypically silent
      for fission in worm; this is not the core, essential fission determinant.
    supported_by:
    - reference_id: PMID:24196833
      supporting_text: >-
        Our results show that fis-1 and fis-2 single and double mutants have wild-type
        mitochondrial morphologies, as also shown by others
    - reference_id: PMID:24196833
      supporting_text: >-
        Mff and Fis1 are not essential for fission or for Drp1 recruitment to
        mitochondria in C. elegans
- term:
    id: GO:0016559
    label: peroxisome fission
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: involved_in
  review:
    summary: >-
      Peroxisome fission is a documented FIS1 function in mammals and plants, but in
      C. elegans fis-1;fis-2 mutants have normal punctate peroxisomes and only
      Mff/Drp1 loss produces tubular (fission-defective) peroxisomes. Family-level
      propagation not supported by direct worm evidence; retain as non-core.
    action: KEEP_AS_NON_CORE
    reason: >-
      No demonstrated peroxisome-fission role for worm fis-2; the worm data show
      normal peroxisomes in Fis1 mutants. Keep as homology-based, non-core.
    supported_by:
    - reference_id: PMID:24196833
      supporting_text: >-
        showing punctate peroxisomes in wild-type and Fis1 mutants and tubular
        peroxisomes in drp-1 mutant and Mff double mutants
    propagation_review:
      root_cause: PROPAGATION_BAD
      failure_modes:
      - FUNCTIONAL_DIVERGENCE
      source_entities:
      - source_id: PANTHER:PTN000326738
        source_label: FIS1 family node
        source_status: SUPPORTS_SOURCE_BUT_NOT_TARGET
- term:
    id: GO:0000266
    label: mitochondrial fission
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: involved_in
  review:
    summary: >-
      Electronic InterPro2GO mapping of the Fis1 domain (IPR016543) to mitochondrial
      fission. Same considerations as the IBA mitochondrial-fission annotation:
      defensible at the family/domain level but not the core essential fission role
      in worm.
    action: KEEP_AS_NON_CORE
    reason: >-
      Redundant with the IBA mitochondrial-fission annotation; family/domain-level
      inference. Non-core given the loss-of-function-silent fission phenotype in
      worm.
- term:
    id: GO:0005739
    label: mitochondrion
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: located_in
  review:
    summary: >-
      Automated electronic annotation to the mitochondrion. Correct and corroborated
      by the direct experimental (IDA) mitochondrial localization from PMID:18722182
      and by ISS from human FIS1.
    action: ACCEPT
    reason: >-
      Well-supported core localization; consistent with the experimental IDA
      annotation.
- term:
    id: GO:0005741
    label: mitochondrial outer membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: >-
      UniProt subcellular-location mapping to mitochondrial outer membrane,
      consistent with the FIS1 tail-anchor topology and ISS from human FIS1.
    action: ACCEPT
    reason: >-
      Well-supported core localization; redundant with the ISS annotation and
      consistent with the experimental mitochondrial localization.
- term:
    id: GO:0005778
    label: peroxisomal membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: >-
      UniProt subcellular-location mapping to peroxisomal membrane, transferred from
      the mammalian FIS1 dual localization. Not directly shown in worm; non-core.
    action: KEEP_AS_NON_CORE
    reason: >-
      Homology-based peroxisomal localization; no direct C. elegans evidence. Retain
      as non-core.
- term:
    id: GO:0005741
    label: mitochondrial outer membrane
  evidence_type: ISS
  original_reference_id: GO_REF:0000024
  qualifier: located_in
  review:
    summary: >-
      ISS transfer of mitochondrial outer membrane localization from human FIS1
      (Q9Y3D6). Consistent with the fis-2 IDA mitochondrial localization and the
      tail-anchor topology.
    action: ACCEPT
    reason: Well-supported core localization; consistent with experimental worm data.
- term:
    id: GO:0005778
    label: peroxisomal membrane
  evidence_type: ISS
  original_reference_id: GO_REF:0000024
  qualifier: located_in
  review:
    summary: >-
      ISS transfer of peroxisomal membrane localization from human FIS1. Plausible by
      homology but not demonstrated in worm; non-core.
    action: KEEP_AS_NON_CORE
    reason: Homology-based; no direct worm evidence for peroxisomal localization.
- term:
    id: GO:0036498
    label: IRE1-mediated unfolded protein response
  evidence_type: HEP
  original_reference_id: PMID:16184190
  qualifier: acts_upstream_of_or_within
  review:
    summary: >-
      High-throughput expression-profiling (HEP) annotation: fis-2 (F13B9.8) was
      identified as a UPR-regulated gene in a genome-wide microarray study of the
      C. elegans unfolded protein response. This reflects transcriptional
      co-regulation of fis-2 with the IRE1/XBP-1 UPR, not a demonstrated functional
      role of fis-2 within the UPR pathway. fis-2 is not named in the paper's text
      (the evidence is in supplementary tables), so no verbatim supporting quote is
      available.
    action: KEEP_AS_NON_CORE
    reason: >-
      Expression-based (HEP) association only; being a UPR target gene does not
      establish that fis-2 acts in the UPR. Retain as a peripheral, non-core
      annotation reflecting transcriptional responsiveness, not core function.
- term:
    id: GO:0005739
    label: mitochondrion
  evidence_type: IDA
  original_reference_id: PMID:18722182
  qualifier: located_in
  review:
    summary: >-
      Direct experimental (IDA) mitochondrial localization of FIS-2 curated by
      WormBase from Breckenridge et al. 2008. This is the strongest, fis-2-specific
      evidence for FIS-2 localization and anchors the core cellular component. The
      cached record is abstract-only, so the localization figure is not quotable
      here; the annotation is retained on the WormBase curator's IDA assignment.
    action: ACCEPT
    reason: >-
      Direct experimental assay in C. elegans (WormBase IDA); the experimental basis
      for FIS-2 mitochondrial localization.
- term:
    id: GO:0006915
    label: apoptotic process
  evidence_type: IGI
  original_reference_id: PMID:18722182
  qualifier: involved_in
  review:
    summary: >-
      The only individually demonstrated fis-2 function. Genetic-interaction (IGI)
      evidence: fis-2 has a minor pro-apoptotic role, revealed in sensitized
      genetic backgrounds, acting downstream of the CED-3 caspase and independently
      of DRP-1 and CED-9 to promote elimination of mitochondria in dying cells and
      facilitate cell-death execution. The effect is minor (fis-2 single mutants
      show only small changes in cell-corpse numbers), so this is a genuine but
      non-essential role.
    action: ACCEPT
    reason: >-
      Experimentally supported, fis-2-specific role in cell-death execution (IGI
      with ced-3). This is the best-characterized function of fis-2 and should be
      retained.
    supported_by:
    - reference_id: PMID:18722182
      supporting_text: >-
        minor proapoptotic roles for drp-1 and fis-2, a homolog of human Fis1, are
        revealed in sensitized genetic backgrounds
    - reference_id: PMID:18722182
      supporting_text: >-
        reveal distinct roles for drp-1 and fis-2 as mediators of cell-death
        execution downstream of caspase activation
- term:
    id: GO:0000423
    label: mitophagy
  evidence_type: IGI
  original_reference_id: PMID:24196833
  qualifier: involved_in
  review:
    summary: >-
      Proposed new annotation (not currently in GOA). Genetic loss of both FIS1
      paralogs (the fis-1;fis-2 double mutant) disrupts the orderly disposal of
      defective mitochondria: mitochondrial stress induces accumulation of large
      LGG-1/LC3-positive autophagic aggregates containing mitochondrial remnants
      and DRP-1, and these aggregates/mitophagosome spots are suppressed by drp-1,
      mff, and pink-1 mutations. fis-2 is genetically part of this pathway
      (drp-1 fis-1 fis-2 and pink-1 fis-1 fis-2 triple mutants). IMPORTANT: the
      disposal phenotype was only demonstrated in the fis-1;fis-2 double, so fis-2's
      contribution is redundant with fis-1, not shown to be fis-2-autonomous.
    action: NEW
    reason: >-
      Captures the experimentally supported biological process in which fis-2
      participates (coupling stress-induced fission to mitophagic disposal),
      currently absent from GOA. Annotated as IGI (redundancy with fis-1) to reflect
      that the phenotype requires loss of both paralogs.
    supported_by:
    - reference_id: PMID:24196833
      supporting_text: >-
        pink-1 single and pink-1 fis-1 fis-2 triple mutant animals had no colocalizing
        spots, as expected for a complete block of mitophagy
    - reference_id: PMID:24196833
      supporting_text: >-
        a drp-1 fis-1 fis-2 triple mutant strain also had reduced number and size of
        aggregates when treated with Paraquat
core_functions:
- description: >-
    FIS-2 is a tail-anchored mitochondrial outer membrane protein of the FIS1
    family that functions in the disposal of mitochondria rather than in the core
    fission reaction. Its individually demonstrated role is a minor pro-apoptotic
    (cell-death execution) function: acting downstream of the CED-3 caspase and
    independently of DRP-1 and CED-9, it promotes elimination of mitochondria in
    dying cells. Redundantly with the paralog fis-1, it also contributes to the
    orderly, PINK-1-dependent disposal of stress-damaged mitochondria downstream
    of MFF/DRP-1-mediated fission. Its molecular activity is inferred, at the
    family level only, to be that of a membrane adaptor/receptor.
  molecular_function:
    id: GO:0060090
    label: molecular adaptor activity
  directly_involved_in:
  - id: GO:0006915
    label: apoptotic process
  - id: GO:0000423
    label: mitophagy
  locations:
  - id: GO:0005741
    label: mitochondrial outer membrane
  supported_by:
  - reference_id: PMID:18722182
    supporting_text: >-
      minor proapoptotic roles for drp-1 and fis-2, a homolog of human Fis1, are
      revealed in sensitized genetic backgrounds
  - reference_id: PMID:24196833
    supporting_text: >-
      pink-1 single and pink-1 fis-1 fis-2 triple mutant animals had no colocalizing
      spots, as expected for a complete block of mitophagy
  - reference_id: PMID:24196833
    supporting_text: >-
      Fis1 is part of the MAM complex and contributes to a late stage of the removal
      process but is not required for entry of Drp1 into the MAM or fission
knowledge_gaps:
- gap_statement: >-
    The molecular activity of FIS-2 is entirely undetermined experimentally. Its
    only molecular-function annotation ("molecular adaptor activity") is a
    phylogenetic (IBA) propagation from the FIS1 family; no C. elegans FIS-2
    protein has been shown to bind DRP-1, a fission adaptor, lipid, or any other
    partner, and no biochemical or structural study of worm FIS-2 exists.
  boundary: >-
    Established: FIS-2 is a FIS1-family tail-anchored protein of the mitochondrial
    outer membrane (IDA mitochondrion; ISS/tail-anchor topology) that participates
    genetically in mitochondrial disposal. Unknown: what FIS-2 actually does at the
    molecular level - its direct binding partner(s) and the biochemical activity,
    if any, beyond membrane anchoring.
  gap_kind:
  - BIOLOGY
  dark_aspect: MF_DARK
  status: OPEN
  significance: >-
    FIS1 has long been presumed a fission receptor; worm (and mammalian) data
    reassign the family to mitochondrial quality-control roles whose mechanism is
    unresolved. For the fis-2 paralog specifically, even the assumed adaptor
    activity is untested, making it a genuinely dark molecular function relevant to
    PINK1/Parkin quality-control biology.
  provenance:
  - reference_id: PMID:24196833
    supporting_text: >-
      Mff and Fis1 are not essential for fission or for Drp1 recruitment to
      mitochondria in C. elegans
- gap_statement: >-
    Whether FIS-2 has any non-redundant, fis-2-autonomous role in mitochondrial
    disposal/mitophagy is unresolved. Every mitophagy/LGG-1-aggregate phenotype
    was scored in the fis-1(tm1867); fis-2(gk414) double mutant (the "Fis1
    mutant"), and both single mutants have wild-type mitochondrial morphology, so
    the individual contribution of fis-2 to orderly disposal (versus complete
    redundancy with, or dispensability relative to, fis-1) has not been measured.
  boundary: >-
    Established: the fis-1;fis-2 double mutant accumulates stress-induced LGG-1
    aggregates and lies genetically downstream of MFF/DRP-1 and PINK-1. Unknown:
    what a fis-2 single loss-of-function does to mitophagic flux, and whether fis-2
    contributes anything the paralog fis-1 does not.
  gap_kind:
  - BIOLOGY
  dark_aspect: RESIDUAL_SUBGAP
  status: OPEN
  significance: >-
    Distinguishing redundant from specialized paralog functions is required before
    fis-2 can be assigned a specific mitophagy role rather than a family-level one,
    and determines whether fis-2 is a distinct quality-control node or a fis-1
    backup.
  provenance:
  - reference_id: PMID:24196833
    supporting_text: >-
      Our results show that fis-1 and fis-2 single and double mutants have wild-type
      mitochondrial morphologies, as also shown by others
- gap_statement: >-
    The direct binding partners and interactome of C. elegans FIS-2 are unmapped.
    It is unknown whether FIS-2 binds DRP-1 (directly or via an adaptor
    intermediate analogous to yeast Mdv1/Caf4), whether it joins an
    ER-mitochondria (MAM) fission/disposal complex as mammalian FIS1 does under
    stress, and which downstream autophagy or apoptotic-machinery factors it
    engages.
  boundary: >-
    Established (in mammals): stress induces a DRP-1-FIS1 co-immunoprecipitable
    complex that also contains ER/MAM proteins. Unknown (for worm FIS-2): its
    physical interactors, and whether the mammalian complex applies to this
    paralog.
  gap_kind:
  - BIOLOGY
  - CURATION
  dark_aspect: MF_DARK
  status: OPEN
  provenance:
  - reference_id: PMID:24196833
    supporting_text: >-
      Recruitment of Drp1 to mitochondria is mediated by proteins that are anchored
      in the mitochondrial outer membrane
- gap_statement: >-
    The mechanism and biological significance of the fis-2-specific pro-apoptotic
    role are unknown. fis-2 promotes elimination of mitochondria in dying cells
    downstream of CED-3 and independently of DRP-1/CED-9, but whether this uses the
    same membrane machinery as its (redundant) mitophagy role, why the effect is
    only detectable in sensitized backgrounds, and why this activity is
    foregrounded for fis-2 but not fis-1, are all unresolved.
  boundary: >-
    Established: in sensitized backgrounds fis-2 has a minor, CED-3-dependent,
    DRP-1/CED-9-independent pro-apoptotic effect on mitochondrial elimination.
    Unknown: the molecular basis of this activity and its relationship to the
    paralog-redundant mitophagy pathway.
  gap_kind:
  - BIOLOGY
  dark_aspect: MF_DARK
  status: OPEN
  provenance:
  - reference_id: PMID:18722182
    supporting_text: >-
      drp-1 and fis-2 function independent of one another and the Bcl-2 homolog
      CED-9 and downstream of the CED-3 caspase to promote elimination of
      mitochondria in dying cells
proposed_new_terms: []
suggested_questions:
- question: >-
    Does a fis-2 single loss-of-function (independent of fis-1) measurably alter
    mitophagic flux or mitochondrial quality control, or is fis-2 fully redundant
    with fis-1?
- question: >-
    Does C. elegans FIS-2 physically interact with DRP-1 or MAM/ER-mitochondria
    components, and does it use an adaptor intermediate, as mammalian FIS1 does
    under stress?
- question: >-
    Do the two worm FIS1 paralogs partition functionally (fis-2 toward
    cell-death-execution disposal, fis-1 toward UVC/mtDNA-damage removal), or are
    they interchangeable?
suggested_experiments:
- hypothesis: >-
    FIS-2 makes a distinct, non-redundant contribution to stress-induced mitophagy
    that is masked by the paralog fis-1 in double-mutant analyses.
  description: >-
    Compare stage-resolved mitophagy flux (mito-Rosella / mtKeima or LGG-1 puncta
    maturation) after Paraquat or antimycin A across wild-type, fis-2 single,
    fis-1 single, and fis-1;fis-2 double mutants, with allele-specific rescue, to
    isolate any fis-2-autonomous step.
- hypothesis: >-
    Worm FIS-2 has direct or adaptor-mediated partners at the mitochondrial outer
    membrane / ER-mitochondrial interface.
  description: >-
    Use proximity labeling (TurboID) or co-immunoprecipitation of endogenously
    tagged FIS-2 from C. elegans under basal and mitochondrial-stress conditions to
    identify DRP-1, MAM, and autophagy/apoptosis interactors and to test for
    adaptor intermediates, comparing the FIS-2 and FIS-1 interactomes.