HSP-16.41 is a heat-inducible small heat shock protein (sHSP) of the alpha-crystallin/HSP20 family, encoded by the single-copy gene Y46H3A.2 on chromosome V, which is transcribed divergently from hsp-16.2 off a shared intergenic promoter containing heat shock elements. It belongs to the same sHSP subclass as HSP-16.48. HSP-16.41 is not expressed under normal conditions and is strongly induced by heat in an HSF-1-dependent manner, with the hsp-16.2/hsp-16.41 promoter acting preferentially in intestine and pharynx; unlike hsp-16.2 it is not hypoxia-responsive. By homology with HSP-16.2, it functions as an ATP-independent holdase chaperone that binds unfolding proteins to prevent their aggregation. Its pharyngeal expression during Salmonella infection depends on the Toll-like receptor TOL-1.
Definition: Binding to an unfolded or misfolded protein to prevent its aggregation without actively catalyzing refolding. The holdase maintains the client protein in a soluble, folding-competent state. This is mechanistically distinct from foldase activity (GO:0044183) and from carrier-holdase activity (GO:0140309).
Justification: hsp-16.41: an alpha-crystallin-domain small HSP of the C. elegans HSP-16 family; the paralogue HSP-16.2 suppresses thermal aggregation of citrate synthase ATP-independently. Obsolete GO:0051082 captured binding only; GO:0044183 requires assisting folding, and GO:0140309 (relabelled 'unfolded protein holdase activity') keeps a carrier-specific definition requiring escort to an acceptor molecule or location, which is not demonstrated here. See go-ontology#30552.
Parent term: molecular_function
Supporting Evidence:
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0005634 nucleus | IBA GO_REF:0000033 | KEEP AS NON CORE | Summary: PAINT IBA for nuclear activity propagated from the sHSP family node PTN000897708 (zebrafish and other vertebrate members as descendant evidence). Reason: Vertebrate sHSPs enter the nucleus under stress and the target is within the clade; there is no direct C. elegans evidence for nuclear HSP-16.41. Retained as a plausible but non-core location (the hsp-16.2 review accepted the same IBA). |
| GO:0005737 cytoplasm | IBA GO_REF:0000033 | ACCEPT | Summary: PAINT IBA for cytoplasm from node PTN000897708, with several C. elegans sHSPs as descendant evidence. Reason: HSP-16 proteins are soluble cytoplasmic chaperones without targeting signals; immunohistochemistry detects stress-induced HSP16s in many tissues. Supporting Evidence: PMID:11001875 Immunohistochemical data on 10 of the 14 small heat-shock (smHSPs) proteins in fourth larval stage and adult Caenorhabditis elegans show that the tissues expressing the greatest number of smHSPs are vulva (HSP12s, HSP43 and, under stress, HSP16s) |
| GO:0009408 response to heat | IBA GO_REF:0000033 | ACCEPT | Summary: PAINT IBA for response to heat from node PTN000897708. Reason: The hsp-16 genes are the archetypal heat-inducible genes of C. elegans: never constitutively expressed and strongly induced by heat via HSF-1 and heat shock elements in the shared intergenic promoters. Supporting Evidence: PMID:1550963 Transcription of the hsp16-lacZ transgenes was totally heat-shock dependent and resulted in the rapid synthesis of detectable levels of beta-galactosidase. |
| GO:0009408 response to heat | IEP PMID:1550963 Temporal and spatial expression patterns of the small heat s... | ACCEPT | Summary: hsp16-lacZ reporter study showing strictly heat-shock-dependent expression of the hsp16 gene pairs, with tissue differences between pairs and no inducibility in germline or early embryo. Reason: Foundational expression evidence for the heat inducibility that defines the hsp-16 genes. Supporting Evidence: PMID:1550963 Transcription of the hsp16-lacZ transgenes was totally heat-shock dependent and resulted in the rapid synthesis of detectable levels of beta-galactosidase. PMID:1550963 they are not heat inducible during gametogenesis or early embryogenesis |
| GO:0030968 endoplasmic reticulum unfolded protein response | HEP PMID:12186849 A survival pathway for Caenorhabditis elegans with a blocked... | KEEP AS NON CORE | Summary: Microarray study: hsp-16 genes are among the genes induced by tunicamycin in an xbp-1-dependent manner (Table I). Reason: The induction is real but HSP-16.41 is a cytoplasmic sHSP; its induction during ER stress is a secondary output, not participation in an ER-lumenal folding response. Non-core. Supporting Evidence: PMID:12186849 Of these 34 genes, 26 were uninduced or induced to significantly lower levels (P < 0.05) in the xbp-1 mutant strain. |
| GO:0036498 IRE1-mediated unfolded protein response | HEP PMID:12186849 A survival pathway for Caenorhabditis elegans with a blocked... | KEEP AS NON CORE | Summary: Same microarray result: tunicamycin induction of hsp-16 transcripts is attenuated in xbp-1 mutants. Reason: xbp-1 dependence places the expression change downstream of IRE-1/XBP-1, but the sHSP is an output of that response, not a component of the signalling pathway. Non-core. Supporting Evidence: PMID:12186849 Of these 34 genes, 26 were uninduced or induced to significantly lower levels (P < 0.05) in the xbp-1 mutant strain. |
| GO:0042026 protein refolding | IBA GO_REF:0000033 | MARK AS OVER ANNOTATED | Summary: PAINT IBA for protein refolding from node PTN000897708. HSP-16.41 is an ATP-independent holdase that sequesters unfolding polypeptides to prevent aggregation rather than catalyzing protein refolding itself. Reason: sHSPs of the alpha-crystallin/HSP20 family (PANTHER:PTN000897708) do not catalyze protein refolding themselves; they bind unfolding intermediates ATP-independently to prevent irreversible aggregation and maintain them in a state from which the ATP-dependent HSP70 chaperone system subsequently refolds them. Although GO:0042026 (protein refolding) is a biological process term, sHSP holdase sequestration occurs during stress to prevent irreversible aggregation independently of whether the client's downstream fate is HSP70-mediated refolding or proteasomal/autophagic degradation, and sHSPs are neither subunits nor cofactors of the ATP-dependent HSP70/J-domain/NEF refolding reaction once substrate is released, so attributing the downstream protein refolding process (GO:0042026) to the upstream stress holdase conflates distinct proteostasis steps (go-ontology#30552). Marked as over-annotated, consistent with the sibling C. elegans hsp-16 and vertebrate sHSP/alpha-crystallin reviews. Propagation Review Root cause: TERM SCOPING PROBLEM Failure modes: ROLE CONFLATION GRANULARITY MISMATCH Sources checked: PANTHER:PTN000897708 Β· PTN000897708 SUPPORTS SOURCE BUT NOT TARGET Ancestral sHSP node placement (Eumetazoa, taxon:6072) is sound for chaperone-like holdase function, but GO:0042026 (protein refolding) ascribes to the sHSP an active foldase step performed by ATP-dependent chaperone machinery rather than HSP-16.41's ATP-independent holdase sequestration. Supporting Evidence: PMID:9305934 both wild-type and C-terminally-truncated HSP16-2 can function as molecular chaperones by suppressing the thermally-induced aggregation of citrate synthase |
| GO:0050829 defense response to Gram-negative bacterium | IEP PMID:17975555 A conserved Toll-like receptor is required for Caenorhabditi... | KEEP AS NON CORE | Summary: Tenor & Aballay reported that the Toll-like receptor TOL-1 is required for correct expression of hsp-16.41 in the pharynx during infection with Salmonella enterica. Reason: Expression-pattern evidence only: hsp-16.41 expression depends on TOL-1 in a pathogen context. This places it among infection-responsive genes, but the paper does not show that HSP-16.41 itself executes antibacterial defense. Retained as a non-core response annotation. Supporting Evidence: PMID:17975555 heat-shock protein 16.41, which is also expressed in the pharynx and is part of a HSP family of proteins required for C. elegans immunity |
| GO:0140309 unfolded protein holdase activity | ISS GO_REF:0000024 | MODIFY | Summary: Curator ISS transfer of unfolded protein holdase activity from a characterized sHSP. Reason: HSP-16.41 is an alpha-crystallin-domain sHSP and its close paralogue HSP-16.2 suppresses thermal aggregation of citrate synthase in vitro, so ATP-independent holdase activity is well supported. However GO:0140309 retains a carrier definition (escort to an acceptor molecule or location), which has not been shown. Following the hsp-16.2 review and go-ontology#30552, the replacement is the proposed holdase chaperone activity NTR. Proposed replacements: holdase chaperone activity Supporting Evidence: PMID:9305934 both wild-type and C-terminally-truncated HSP16-2 can function as molecular chaperones by suppressing the thermally-induced aggregation of citrate synthase PMID:2632349 These hsps show extensive sequence identity with the small hsps of Drosophila, as well as with mammalian alpha-crystallins. |
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Download this section (compressed HTML)Q: Do HSP-16.1/16.2 (one subclass) and HSP-16.41/16.48 (the other subclass) form mixed oligomers in vivo, and do they differ in client range?
Q: Does the HSP-16 family hand clients to the inducible HSP70s (HSP-70, F44E5.4/5) for refolding, or primarily route them to sequestration/degradation?
Experiment: Purify recombinant HSP-16.41 and test ATP-independent suppression of thermal aggregation of model clients (citrate synthase, luciferase), alone and with HSP-70 + DNJ-13 to measure hand-off refolding.
Hypothesis: HSP-16.41 is an ATP-independent holdase whose bound clients can be refolded by the worm HSP70/HSP40 system.
hsp-16.41 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; an hsp-16.41 reporter fusion, expressed broadly but strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; expression is detectable in somatic tissues in post-gastrulation embryos, all larval stages, and in adults; HSP-16.41 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating.
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