hsp-16.41

UniProt ID: P06581
Organism: Caenorhabditis elegans
Review Status: DRAFT
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Gene Description

HSP-16.41 is a heat-inducible small heat shock protein (sHSP) of the alpha-crystallin/HSP20 family, encoded by the single-copy gene Y46H3A.2 on chromosome V, which is transcribed divergently from hsp-16.2 off a shared intergenic promoter containing heat shock elements. It belongs to the same sHSP subclass as HSP-16.48. HSP-16.41 is not expressed under normal conditions and is strongly induced by heat in an HSF-1-dependent manner, with the hsp-16.2/hsp-16.41 promoter acting preferentially in intestine and pharynx; unlike hsp-16.2 it is not hypoxia-responsive. By homology with HSP-16.2, it functions as an ATP-independent holdase chaperone that binds unfolding proteins to prevent their aggregation. Its pharyngeal expression during Salmonella infection depends on the Toll-like receptor TOL-1.

Proposed New Ontology Terms

holdase chaperone activity

Definition: Binding to an unfolded or misfolded protein to prevent its aggregation without actively catalyzing refolding. The holdase maintains the client protein in a soluble, folding-competent state. This is mechanistically distinct from foldase activity (GO:0044183) and from carrier-holdase activity (GO:0140309).

Justification: hsp-16.41: an alpha-crystallin-domain small HSP of the C. elegans HSP-16 family; the paralogue HSP-16.2 suppresses thermal aggregation of citrate synthase ATP-independently. Obsolete GO:0051082 captured binding only; GO:0044183 requires assisting folding, and GO:0140309 (relabelled 'unfolded protein holdase activity') keeps a carrier-specific definition requiring escort to an acceptor molecule or location, which is not demonstrated here. See go-ontology#30552.

Parent term: molecular_function

Supporting Evidence:

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005634 nucleus
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: PAINT IBA for nuclear activity propagated from the sHSP family node PTN000897708 (zebrafish and other vertebrate members as descendant evidence).
Reason: Vertebrate sHSPs enter the nucleus under stress and the target is within the clade; there is no direct C. elegans evidence for nuclear HSP-16.41. Retained as a plausible but non-core location (the hsp-16.2 review accepted the same IBA).
GO:0005737 cytoplasm
IBA
GO_REF:0000033
ACCEPT
Summary: PAINT IBA for cytoplasm from node PTN000897708, with several C. elegans sHSPs as descendant evidence.
Reason: HSP-16 proteins are soluble cytoplasmic chaperones without targeting signals; immunohistochemistry detects stress-induced HSP16s in many tissues.
Supporting Evidence:
PMID:11001875
Immunohistochemical data on 10 of the 14 small heat-shock (smHSPs) proteins in fourth larval stage and adult Caenorhabditis elegans show that the tissues expressing the greatest number of smHSPs are vulva (HSP12s, HSP43 and, under stress, HSP16s)
GO:0009408 response to heat
IBA
GO_REF:0000033
ACCEPT
Summary: PAINT IBA for response to heat from node PTN000897708.
Reason: The hsp-16 genes are the archetypal heat-inducible genes of C. elegans: never constitutively expressed and strongly induced by heat via HSF-1 and heat shock elements in the shared intergenic promoters.
Supporting Evidence:
PMID:1550963
Transcription of the hsp16-lacZ transgenes was totally heat-shock dependent and resulted in the rapid synthesis of detectable levels of beta-galactosidase.
GO:0009408 response to heat
IEP
PMID:1550963
Temporal and spatial expression patterns of the small heat s...
ACCEPT
Summary: hsp16-lacZ reporter study showing strictly heat-shock-dependent expression of the hsp16 gene pairs, with tissue differences between pairs and no inducibility in germline or early embryo.
Reason: Foundational expression evidence for the heat inducibility that defines the hsp-16 genes.
Supporting Evidence:
PMID:1550963
Transcription of the hsp16-lacZ transgenes was totally heat-shock dependent and resulted in the rapid synthesis of detectable levels of beta-galactosidase.
PMID:1550963
they are not heat inducible during gametogenesis or early embryogenesis
GO:0030968 endoplasmic reticulum unfolded protein response
HEP
PMID:12186849
A survival pathway for Caenorhabditis elegans with a blocked...
KEEP AS NON CORE
Summary: Microarray study: hsp-16 genes are among the genes induced by tunicamycin in an xbp-1-dependent manner (Table I).
Reason: The induction is real but HSP-16.41 is a cytoplasmic sHSP; its induction during ER stress is a secondary output, not participation in an ER-lumenal folding response. Non-core.
Supporting Evidence:
PMID:12186849
Of these 34 genes, 26 were uninduced or induced to significantly lower levels (P < 0.05) in the xbp-1 mutant strain.
GO:0036498 IRE1-mediated unfolded protein response
HEP
PMID:12186849
A survival pathway for Caenorhabditis elegans with a blocked...
KEEP AS NON CORE
Summary: Same microarray result: tunicamycin induction of hsp-16 transcripts is attenuated in xbp-1 mutants.
Reason: xbp-1 dependence places the expression change downstream of IRE-1/XBP-1, but the sHSP is an output of that response, not a component of the signalling pathway. Non-core.
Supporting Evidence:
PMID:12186849
Of these 34 genes, 26 were uninduced or induced to significantly lower levels (P < 0.05) in the xbp-1 mutant strain.
GO:0042026 protein refolding
IBA
GO_REF:0000033
MARK AS OVER ANNOTATED
Summary: PAINT IBA for protein refolding from node PTN000897708. HSP-16.41 is an ATP-independent holdase that sequesters unfolding polypeptides to prevent aggregation rather than catalyzing protein refolding itself.
Reason: sHSPs of the alpha-crystallin/HSP20 family (PANTHER:PTN000897708) do not catalyze protein refolding themselves; they bind unfolding intermediates ATP-independently to prevent irreversible aggregation and maintain them in a state from which the ATP-dependent HSP70 chaperone system subsequently refolds them. Although GO:0042026 (protein refolding) is a biological process term, sHSP holdase sequestration occurs during stress to prevent irreversible aggregation independently of whether the client's downstream fate is HSP70-mediated refolding or proteasomal/autophagic degradation, and sHSPs are neither subunits nor cofactors of the ATP-dependent HSP70/J-domain/NEF refolding reaction once substrate is released, so attributing the downstream protein refolding process (GO:0042026) to the upstream stress holdase conflates distinct proteostasis steps (go-ontology#30552). Marked as over-annotated, consistent with the sibling C. elegans hsp-16 and vertebrate sHSP/alpha-crystallin reviews.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: ROLE CONFLATION GRANULARITY MISMATCH
Sources checked:
PANTHER:PTN000897708 Β· PTN000897708 SUPPORTS SOURCE BUT NOT TARGET
Ancestral sHSP node placement (Eumetazoa, taxon:6072) is sound for chaperone-like holdase function, but GO:0042026 (protein refolding) ascribes to the sHSP an active foldase step performed by ATP-dependent chaperone machinery rather than HSP-16.41's ATP-independent holdase sequestration.
Supporting Evidence:
PMID:9305934
both wild-type and C-terminally-truncated HSP16-2 can function as molecular chaperones by suppressing the thermally-induced aggregation of citrate synthase
GO:0050829 defense response to Gram-negative bacterium
IEP
PMID:17975555
A conserved Toll-like receptor is required for Caenorhabditi...
KEEP AS NON CORE
Summary: Tenor & Aballay reported that the Toll-like receptor TOL-1 is required for correct expression of hsp-16.41 in the pharynx during infection with Salmonella enterica.
Reason: Expression-pattern evidence only: hsp-16.41 expression depends on TOL-1 in a pathogen context. This places it among infection-responsive genes, but the paper does not show that HSP-16.41 itself executes antibacterial defense. Retained as a non-core response annotation.
Supporting Evidence:
PMID:17975555
heat-shock protein 16.41, which is also expressed in the pharynx and is part of a HSP family of proteins required for C. elegans immunity
GO:0140309 unfolded protein holdase activity
ISS
GO_REF:0000024
MODIFY
Summary: Curator ISS transfer of unfolded protein holdase activity from a characterized sHSP.
Reason: HSP-16.41 is an alpha-crystallin-domain sHSP and its close paralogue HSP-16.2 suppresses thermal aggregation of citrate synthase in vitro, so ATP-independent holdase activity is well supported. However GO:0140309 retains a carrier definition (escort to an acceptor molecule or location), which has not been shown. Following the hsp-16.2 review and go-ontology#30552, the replacement is the proposed holdase chaperone activity NTR.
Proposed replacements: holdase chaperone activity
Supporting Evidence:
PMID:9305934
both wild-type and C-terminally-truncated HSP16-2 can function as molecular chaperones by suppressing the thermally-induced aggregation of citrate synthase
PMID:2632349
These hsps show extensive sequence identity with the small hsps of Drosophila, as well as with mammalian alpha-crystallins.

Core Functions

Heat-inducible ATP-independent holdase chaperone of the HSP-16 family that binds unfolding cytoplasmic proteins to prevent aggregation during heat stress.

Molecular Function:
holdase chaperone activity (proposed)
Directly Involved In:
Cellular Locations:
Supporting Evidence:
  • PMID:1550963
    Transcription of the hsp16-lacZ transgenes was totally heat-shock dependent and resulted in the rapid synthesis of detectable levels of beta-galactosidase.
  • PMID:27688402
    The expression of classical heat-shock genes hsp-16.41 and hsp-70 (C12C8.1) was severely compromised (>99% reduced) in hsf-1(ok600) animals exposed to heat shock compared with N2 animals
  • PMID:2632349
    Comparisons of the derived amino acid sequences show that hsp16-1 and hsp16-2 form a closely related pair, as do hsp16-41 and hsp16-48.
  • PMID:9305934
    both wild-type and C-terminally-truncated HSP16-2 can function as molecular chaperones by suppressing the thermally-induced aggregation of citrate synthase

References

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Suggested Questions for Experts

Q: Do HSP-16.1/16.2 (one subclass) and HSP-16.41/16.48 (the other subclass) form mixed oligomers in vivo, and do they differ in client range?

Q: Does the HSP-16 family hand clients to the inducible HSP70s (HSP-70, F44E5.4/5) for refolding, or primarily route them to sequestration/degradation?

Suggested Experiments

Experiment: Purify recombinant HSP-16.41 and test ATP-independent suppression of thermal aggregation of model clients (citrate synthase, luciferase), alone and with HSP-70 + DNJ-13 to measure hand-off refolding.

Hypothesis: HSP-16.41 is an ATP-independent holdase whose bound clients can be refolded by the worm HSP70/HSP40 system.

Tags

caeel-proteostasis

Deep Research

WormBase

(hsp-16.41-deep-research-wormbase.md)
WormBase gene description for hsp-16.41 (worm) WormBase

WormBase gene description for hsp-16.41 (worm)

hsp-16.41 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; an hsp-16.41 reporter fusion, expressed broadly but strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; expression is detectable in somatic tissues in post-gastrulation embryos, all larval stages, and in adults; HSP-16.41 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating.

πŸ“š Additional Documentation

Notes

(hsp-16.41-notes.md)

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