klp-20 encodes one of the two motor subunits of heterotrimeric kinesin-II, the anterograde intraflagellar transport (IFT) motor of Caenorhabditis elegans. It is a member of the kinesin-2 subfamily with an N-terminal kinesin motor domain (P-loop ATPase) and a C-terminal coiled-coil stalk. klp-20 does not act alone: it heterodimerizes through its C-terminal stalk with the second motor subunit klp-11, and this heterodimer associates with the non-motor accessory subunit kap-1 to form the heterotrimeric kinesin-II holoenzyme (klp-11/klp-20/kap-1). Heterodimerization with klp-11 is required to generate a processive motor and to bind kap-1, which links the motor to IFT cargo. As part of kinesin-II the protein is an ATP-driven, microtubule plus-end-directed motor that, together with the homodimeric kinesin-2 motor osm-3, powers anterograde IFT along the middle (doublet) segment of sensory-neuron cilia, building and maintaining the ciliary axoneme. It localizes to sensory cilia, including the ciliary base and transition zone.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0003777
microtubule motor activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic (IBA) support for microtubule motor activity, redundant with the experimental IDA below (PMID:17000880). Correct core molecular function of the kinesin motor domain. The more specific term is plus-end-directed microtubule motor activity (GO:0008574), captured in core_functions.
Supporting Evidence:
PMID:17000880
indicating that Mg-ATP is the preferred substrate for kinesin-2 motors
|
|
GO:0005737
cytoplasm
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Broad cytoplasmic localization consistent with UniProt (Cytoplasm, cytoskeleton by similarity), but uninformative relative to the specific ciliary localization. Keep as non-core context.
|
|
GO:0008017
microtubule binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Microtubule binding is intrinsic to the kinesin motor domain and required for the motor to engage its track. Correct and consistent with plus-end-directed motor activity; retained as a supporting molecular function.
|
|
GO:0060271
cilium assembly
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Kinesin-II (with klp-20 as a motor subunit) and osm-3 move IFT particles that redundantly build the sensory cilium foundation, so involvement in cilium assembly is well supported. Accept as a core biological process.
Supporting Evidence:
PMID:17000880
either motor but not both being dispensable for this function
|
|
GO:0005871
kinesin complex
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Correct but general parent of the specific complex membership. klp-20 is a subunit of the (axonemal heterotrimeric) kinesin-II complex; the specific terms GO:0016939/GO:0030993 are preferred. Keep as non-core.
|
|
GO:0005874
microtubule
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: The microtubule is the motor's track rather than a distinct cellular location of the protein. Consistent with function but non-core; the informative location is the cilium.
|
|
GO:0016887
ATP hydrolysis activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: ATP hydrolysis powers the kinesin motor; the motor domain of klp-20 contains the P-loop (Walker A) ATPase site, and purified kinesin-II shows Mg-ATP-dependent motility with Michaelis-Menten kinetics (PMID:17000880). Accept as part of the core motor mechanism.
Supporting Evidence:
PMID:17000880
kinesin-II–driven motility conformed to Michaelis-Menten kinetics
|
|
GO:0008089
anterograde axonal transport
|
IBA
GO_REF:0000033 |
MARK AS OVER ANNOTATED |
Summary: This term is a phylogenetic transfer from kinesin-II orthologs (KIF3) that act in neuronal axonal transport. In C. elegans the documented role of klp-20/kinesin-II is anterograde intraflagellar (ciliary) transport, not classical axonal cargo transport; there is no experimental evidence for a klp-20 axonal-transport role in worm. Treated as an over-propagated electronic inference; the accurate specific term is intraciliary anterograde transport (GO:0035720).
Propagation Review
Root cause:
TERM SCOPING PROBLEM
Failure modes:
CONTEXT OR TISSUE MISMATCH
GRANULARITY MISMATCH
Sources checked:
FB:FBgn0004380
· Klp64D (Drosophila kinesin-II KIF3A ortholog)
SUPPORTS SOURCE BUT NOT TARGET
Kinesin-II orthologs act in neuronal anterograde axonal transport, but the documented C. elegans klp-20 role is anterograde intraciliary transport, not axonal cargo transport; the axon-specific term does not transfer.
PANTHER:PTN000650181
· kinesin-2 anterograde-transport node
SUPPORTS SOURCE BUT NOT TARGET
Node-level anterograde-transport inference; the ciliary (GO:0035720) rather than axonal (GO:0008089) child is the correct scoping for klp-20.
|
|
GO:0003777
microtubule motor activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic (InterPro/ARBA) support for microtubule motor activity, redundant with the experimental IDA (PMID:17000880) and the IBA above. Correct core molecular function.
|
|
GO:0005524
ATP binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: ATP binding via the conserved P-loop/Walker A motif of the kinesin motor domain (UniProt BINDING 91..98). Correct molecular-mechanism support for the ATP-driven motor; retained as supporting.
|
|
GO:0005856
cytoskeleton
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: General cytoskeletal localization from an electronic subcellular-location rule. Consistent with a microtubule motor but non-specific; the informative location is the cilium.
|
|
GO:0005929
cilium
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Ciliary localization is well established: klp-20/kinesin-II functions in sensory cilia and UniProt records SUBCELLULAR LOCATION cilium (localizing to the base and transition zone; PMID:28479320). Accept as a core cellular location.
|
|
GO:0007018
microtubule-based movement
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic support for microtubule-based movement, redundant with the experimental IDA (PMID:17000880). Correct but general; the specific process is intraciliary anterograde transport (GO:0035720). Accept.
|
|
GO:0008017
microtubule binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: Electronic (InterPro) support for microtubule binding, redundant with the IBA above and intrinsic to the motor domain. Accept as supporting molecular function.
|
|
GO:0032991
protein-containing complex
|
IEA
GO_REF:0000117 |
MARK AS OVER ANNOTATED |
Summary: Root-level complex membership from an ARBA rule. True (klp-20 is part of kinesin-II) but uninformative; the specific complex terms GO:0016939 and GO:0030993 supersede it. Over-annotated at this level of generality.
|
|
GO:1904115
axon cytoplasm
|
IEA
GO_REF:0000108 |
MARK AS OVER ANNOTATED |
Summary: Inferred logically (GO_REF:0000108) from the anterograde axonal transport annotation (GO:0008089), which is itself an over-propagated phylogenetic transfer. klp-20 acts in sensory cilia in C. elegans, not documented axoplasm; this location is a downstream consequence of the over-annotated axonal-transport term.
|
|
GO:0007018
microtubule-based movement
|
NAS
PMID:20498083 Regulation of a heterodimeric kinesin-2 through an unprocess... |
ACCEPT |
Summary: ComplexPortal NAS annotation for microtubule-based movement, supported by the biophysical characterization of the KLP-11/KLP-20 heterodimer motor. Correct but general relative to intraciliary anterograde transport; accept.
Supporting Evidence:
PMID:20498083
One motor domain is unprocessive as a homodimer
|
|
GO:0016939
kinesin II complex
|
NAS
PMID:20498083 Regulation of a heterodimeric kinesin-2 through an unprocess... |
ACCEPT |
Summary: klp-20 is a subunit of the kinesin II complex (the klp-11/klp-20/kap-1 heterotrimer). Directly supported: heterodimerization of klp-20 with klp-11 is required to bind kap-1 (PMID:20498083), and the purified heterotrimer was characterized in PMID:17000880. Accept as core complex membership; the axonemal term GO:0030993 is the most specific.
Supporting Evidence:
PMID:20498083
heterodimerization is necessary to bind KAP1, the in vivo link between motor and
|
|
GO:0035720
intraciliary anterograde transport
|
NAS
PMID:20498083 Regulation of a heterodimeric kinesin-2 through an unprocess... |
ACCEPT |
Summary: Anterograde IFT is the core biological process of kinesin-II. As a kinesin-II motor subunit, klp-20 drives base-to-tip transport of IFT particles along sensory cilia together with osm-3. Accept as a core process.
Supporting Evidence:
PMID:17000880
two anterograde IFT motors called kinesin-II and OSM-3
|
|
GO:0003777
microtubule motor activity
|
IDA
PMID:17000880 Mechanism of transport of IFT particles in C. elegans cilia ... |
ACCEPT |
Summary: Direct experimental (IDA) annotation from characterization of purified kinesin-II, which contains klp-20 as one of its two motor subunits and moves microtubules in an ATP-dependent manner. This is the strongest evidence for the core molecular function. The most specific term is plus-end-directed microtubule motor activity (GO:0008574), used in core_functions.
Supporting Evidence:
PMID:17000880
the KLP-11, KAP-1, and KLP-20 subunits elute as a monodisperse heterotrimeric complex
|
|
GO:0007018
microtubule-based movement
|
IDA
PMID:17000880 Mechanism of transport of IFT particles in C. elegans cilia ... |
ACCEPT |
Summary: Direct experimental annotation for microtubule-based movement from the kinesin-II gliding assays. Correct; general relative to intraciliary anterograde transport but experimentally solid. Accept.
Supporting Evidence:
PMID:17000880
indicating that Mg-ATP is the preferred substrate for kinesin-2 motors
|
|
GO:0030993
axonemal heterotrimeric kinesin-II complex
|
IPI
PMID:17000880 Mechanism of transport of IFT particles in C. elegans cilia ... |
ACCEPT |
Summary: Direct physical-interaction (IPI) evidence that klp-20 is a subunit of the axonemal heterotrimeric kinesin-II complex, purified as a monodisperse heterotrimer of KLP-11/KLP-20/KAP-1 (with WormBase klp-11 and kap-1 as the with/from partners). This is the most specific and best-supported complex-membership term and the core cellular-component annotation.
Supporting Evidence:
PMID:17000880
consisting of 1 mol each of its subunits KLP-11, KLP-20, and KAP-1 with a native molecular mass of 287 kD
|
|
GO:0008574
plus-end-directed microtubule motor activity
|
IDA
PMID:17000880 Mechanism of transport of IFT particles in C. elegans cilia ... |
NEW |
Summary: Proposed refinement of the experimental microtubule motor activity annotation (GO:0003777, IDA, PMID:17000880) to the more specific plus-end-directed microtubule motor activity. Kinesins are plus-end-directed motors and kinesin-II (with klp-20) drives anterograde (base-to-tip, plus-end-directed) IFT; the purified motor moves microtubules in gliding assays. This is the primary core molecular function.
Supporting Evidence:
PMID:17000880
kinesin-II alone moved MTs at a maximal rate of 0.3
|
Q: Within the klp-11/klp-20 heterodimer, which motor domain is the processive one and which is unprocessive, and how do the two heads cooperate to set the ~0.5 um/s in vivo velocity of kinesin-II?
Q: How does cargo binding to kap-1 relieve the tail-mediated autoinhibition of the klp-11/klp-20 heterodimer, and what is the specific contribution of the klp-20 tail (residues 444-445 and the 525-550 klp-11 interaction region)?
Experiment: Single-molecule motility (TIRF) comparison of purified klp-20 homodimer, klp-11 homodimer, and klp-11/klp-20 heterodimer with subunit-specific fluorophores, to assign processivity and duty ratio to each subunit and test the asymmetric-autoregulation model.
Hypothesis: klp-20 and klp-11 have different intrinsic processivities, and one specific subunit is the unprocessive, autoregulatory head.
Experiment: In vivo IFT imaging (kymography of fluorescently tagged IFT components) in klp-20 loss-of-function versus osm-3 loss-of-function animals to define the cargoes and axonemal segments whose transport specifically depends on the klp-20-containing kinesin-II motor.
Hypothesis: The klp-20-containing kinesin-II motor is specifically required for anterograde transport of a defined subset of IFT cargoes along the middle (doublet) segment.
What is not known — curated, literature-grounded statements of the open unknowns (the inverse of core functions).
Gap: Within the klp-11/klp-20 heterodimer it is not resolved which subunit is the "unprocessive" motor domain and which is the processive one — i.e. whether klp-20 itself is the processive or the autoinhibited/unprocessive head, and the residue-level basis of its individual duty ratio.
OPEN BIOLOGY RESIDUAL_SUBGAP
What is known: It is established that heterodimerization of the two distinct C. elegans kinesin-2 motor domains converts an otherwise unprocessive homodimer into a processive heterodimer, that the unprocessive subunit mediates an asymmetric autoregulation of motor activity, and that the heterodimer must form to bind kap-1 (the cargo link). UniProt annotates two klp-20 residues (444, 445) as possibly required for autoinhibition within the heterodimer.
Significance: Kinesin-2 heterodimerization is the paradigm for how obligate motor heterodimers tune processivity and autoregulation; assigning the processive vs unprocessive role to klp-20 vs klp-11 defines the mechanistic division of labor of the anterograde IFT motor.
What would resolve it: Single-molecule processivity assays on defined homodimeric vs heterodimeric constructs of the klp-20 and klp-11 motor domains, with subunit-specific labeling and head-tracking to assign duty ratio to each subunit.
Provenance (the field's own admissions):
Gap: The direct, klp-20-motor-selected ciliary cargo repertoire is not enumerated: what cargoes the klp-20-containing kinesin-II specifically delivers is inferred through the IFT-A/IFT-B particle rather than measured for the motor itself.
OPEN BIOLOGYCURATION BP_DARK
What is known: Kinesin-II (with klp-20 as a motor subunit) and osm-3 are the two anterograde IFT motors that move IFT particles to build the sensory cilium foundation; kap-1 provides the in vivo link between the motor and cargo.
Significance: Defining the motor-specific cargo would clarify how the two anterograde IFT motors (kinesin-II vs osm-3) divide cargo responsibilities along the ciliary axoneme, which is central to understanding ciliogenesis and ciliopathy.
What would resolve it: Proximity labeling or cargo-trapping proteomics on the klp-20/kap-1 motor in cilia, combined with klp-20 loss-of-function IFT imaging to identify cargoes whose ciliary delivery specifically requires the klp-20-containing motor.
Provenance (the field's own admissions):
The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.
You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.
We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.
We are interested in where in or outside the cell the gene product carries out its function.
We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.
Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.
The gene klp-20 (ORF name Y50D7A.6; UniProt accession Q965T6) encodes a kinesin-like protein in Caenorhabditis elegans. KLP-20 belongs to the TRAFAC class myosin-kinesin ATPase superfamily and contains a canonical kinesin motor domain (InterPro: IPR001752), a kinesin-like family domain (IPR027640), a P-loop NTPase domain (IPR027417), and a kinesin motor domain conserved site (IPR019821). These domains are diagnostic of a microtubule-dependent motor protein that couples ATP hydrolysis to directional movement along microtubule tracks.
The summary of KLP-20's key properties is provided below:
| Property | Value |
|---|---|
| Gene name | klp-20 (maguire2015myristoylatedcil7is pages 13-17) |
| ORF name | Y50D7A.6 |
| UniProt accession | Q965T6 |
| Protein family | Kinesin-2 / heterotrimeric kinesin-II; TRAFAC-class myosin-kinesin ATPase superfamily (maguire2015myristoylatedcil7is pages 13-17, nakayama2018ciliaryproteintrafficking pages 4-5) |
| Complex partners | KLP-11 and KAP-1 form the heterotrimeric kinesin-II complex with KLP-20 (maguire2015myristoylatedcil7is pages 13-17, nakayama2018ciliaryproteintrafficking pages 4-5) |
| Mammalian ortholog / counterpart | Functional counterpart within the mammalian heterotrimeric kinesin-II complex: KIF3B (with KIF3A and KAP3/KIFAP3) (nakayama2018ciliaryproteintrafficking pages 4-5, verhey2011kinesinmotorsand pages 2-4) |
| Molecular function | ATP-dependent microtubule motor that drives anterograde intraflagellar transport (IFT) of IFT complexes/cargo during ciliogenesis and ciliary maintenance (maguire2015myristoylatedcil7is pages 13-17, maguire2015myristoylatedcil7is pages 7-13, verhey2011kinesinmotorsand pages 2-4) |
| Subcellular localization | Cilia of ciliated sensory neurons, including amphids, phasmids, IL2 neurons, and male-specific sensory neurons (maguire2015myristoylatedcil7is pages 13-17, maguire2015myristoylatedcil7is pages 7-13) |
| Motor velocity alone | ~0.5 μm/s for kinesin-II anterograde movement in amphid channel cilia / transition zone loading phase (maguire2015myristoylatedcil7is pages 13-17, prevo2017intraflagellartransportmechanisms pages 33-35, prevo2017intraflagellartransportmechanisms pages 12-14) |
| Motor velocity with OSM-3 | ~0.7 μm/s when kinesin-II and OSM-3 co-transport IFT trains in the middle segment (maguire2015myristoylatedcil7is pages 13-17, prevo2017intraflagellartransportmechanisms pages 12-14) |
| Key biological process | Intraflagellar transport supporting cilia assembly, maintenance, and organization of middle/proximal ciliary segments (nakayama2018ciliaryproteintrafficking pages 4-5, li2024regulationofciliary pages 3-5) |
| Functional division of labor | Kinesin-II loads/navigates IFT trains through the transition zone and cooperates with OSM-3 in the middle segment; OSM-3 alone builds/transports in the distal segment (prevo2017intraflagellartransportmechanisms pages 33-35, maguire2015myristoylatedcil7is pages 13-17, prevo2017intraflagellartransportmechanisms pages 12-14) |
| Mutant phenotype | In single mutants of heterotrimeric kinesin-II genes including klp-20, amphid chemosensory cilia are maintained because OSM-3 compensates; thus klp-20 loss alone yields a relatively mild/partially redundant ciliary phenotype (verhey2011kinesinmotorsand pages 2-4) |
Table: This table summarizes the core annotated and literature-supported properties of C. elegans KLP-20, including its kinesin-II complex membership, ciliary localization, transport role, velocities, and mutant behavior. It is useful as a compact reference for functional annotation.
KLP-20 is one of the two motor subunits of the C. elegans heterotrimeric kinesin-II complex, a member of the kinesin-2 family (maguire2015myristoylatedcil7is pages 13-17, nakayama2018ciliaryproteintrafficking pages 4-5). The heterotrimeric kinesin-II complex consists of two distinct motor subunits, KLP-20 and KLP-11, plus the non-motor accessory subunit KAP-1 (maguire2015myristoylatedcil7is pages 13-17, maguire2015myristoylatedcil7is pages 7-13). This complex is the functional ortholog of the mammalian heterotrimeric kinesin-II comprising KIF3A, KIF3B, and KAP3/KIFAP3, with KLP-20 serving as the functional counterpart of KIF3B (nakayama2018ciliaryproteintrafficking pages 4-5, verhey2011kinesinmotorsand pages 2-4).
As a kinesin motor protein, KLP-20 functions as an ATP-dependent microtubule-based motor. The enzymatic reaction catalyzed is the hydrolysis of ATP to ADP and inorganic phosphate (Pi), and this chemical energy is coupled to plus-end-directed translocation along microtubule tracks. The substrate is ATP (with Mg²⁺ as a cofactor), and the protein generates mechanical force through conformational changes in the motor domain upon nucleotide binding and hydrolysis. The kinesin motor domain contains a P-loop NTPase fold characteristic of this superfamily.
The primary biological function of KLP-20, as part of the heterotrimeric kinesin-II complex, is to drive anterograde intraflagellar transport (IFT) in the cilia of sensory neurons (maguire2015myristoylatedcil7is pages 13-17, maguire2015myristoylatedcil7is pages 7-13, nakayama2018ciliaryproteintrafficking pages 4-5). IFT is an essential, highly conserved mechanism for the assembly, maintenance, and function of cilia. During IFT, kinesin-II assembles with IFT particle complexes (IFT-A and IFT-B) and associated cargoes—including axoneme precursors, ciliary membrane proteins, signaling molecules, and retrograde motors—and drives their anterograde (base-to-tip) transport along axonemal microtubules (maguire2015myristoylatedcil7is pages 13-17, verhey2011kinesinmotorsand pages 2-4).
A distinguishing feature of IFT in C. elegans sensory cilia is the cooperative action of two kinesin-2 motors: the heterotrimeric kinesin-II (containing KLP-20/KLP-11/KAP-1) and the homodimeric kinesin-2 motor OSM-3 (the C. elegans ortholog of mammalian KIF17) (maguire2015myristoylatedcil7is pages 13-17, li2024regulationofciliary pages 3-5). These two motors have distinct velocities and roles:
This cooperation involves a coordinated motor handover mechanism: as IFT trains move distally along the middle segment, kinesin-II gradually undocks from the trains while OSM-3 motors simultaneously dock, causing progressive acceleration. In the distal segment, OSM-3 alone occupies the trains, reaching terminal velocity. During retrograde transport, IFT dynein returns the trains to the base while recycling OSM-3, and kinesin-II gradually re-docks along the proximal segment (prevo2017intraflagellartransportmechanisms pages 33-35).
The C. elegans amphid channel cilia exhibit a characteristic bipartite structure with a middle segment containing nine microtubule doublets and a distal segment containing nine microtubule singlets. Kinesin-II and OSM-3 work together redundantly to build the middle segment, while OSM-3 alone is responsible for constructing the distal segment (nakayama2018ciliaryproteintrafficking pages 4-5, maguire2015myristoylatedcil7is pages 13-17, li2024regulationofciliary pages 3-5, prevo2017intraflagellartransportmechanisms pages 15-17). The handover zone between kinesin-II and OSM-3 defines the boundary between proximal and distal ciliary compartments, and this boundary is regulated by kinases such as CDKL-1 (park2021cdklkinaseregulates pages 1-3, park2021cdklkinaseregulates pages 12-13).
KLP-20, as part of the heterotrimeric kinesin-II complex, is expressed and functions within the cilia of all ciliated sensory neurons in C. elegans (maguire2015myristoylatedcil7is pages 13-17, maguire2015myristoylatedcil7is pages 7-13). In adult hermaphrodites, 60 of 302 neurons possess ciliated dendritic endings, including the amphid neurons (primary chemosensory organs in the head), phasmid neurons (chemosensory organs in the tail), inner labial neurons (IL1, IL2), and various other sensory neurons. Male C. elegans possess an additional ~50 ciliated sensory neurons involved in mating behaviors (maguire2015myristoylatedcil7is pages 7-13). Specifically, KLP-20 localizes to the ciliary compartment where it carries out anterograde IFT along the axoneme, with highest concentration in the transition zone and middle (proximal) segment of cilia (prevo2017intraflagellartransportmechanisms pages 33-35, prevo2017intraflagellartransportmechanisms pages 12-14).
A notable aspect of KLP-20 function in C. elegans is its partial redundancy with OSM-3. In single mutants of any of the heterotrimeric kinesin-II genes (klp-11, klp-20, or kap-1), the non-motile cilia at the dendritic endings of amphid chemosensory neurons are maintained, because OSM-3 compensates for the loss of kinesin-II function (verhey2011kinesinmotorsand pages 2-4). This contrasts sharply with the situation in most other organisms, where loss of heterotrimeric kinesin-II leads to a complete absence of cilia. In mammals, for example, deletion of either Kif3a or Kif3b results in a "no cilia" phenotype (nakayama2018ciliaryproteintrafficking pages 4-5). The unique redundancy in C. elegans was established through studies showing that kinesin-II and OSM-3 work cooperatively and redundantly in the middle region of ASH/ASI channel and AWC wing cilia, whereas OSM-3 works alone to build the distal region (verhey2011kinesinmotorsand pages 2-4). However, this compensation is not universal across all cilia types in C. elegans; the roles of kinesin-2 and OSM-3 differ across different chemosensory neuron types within the amphid organ (verhey2011kinesinmotorsand pages 2-4).
The activity of kinesin motors in C. elegans cilia, including kinesin-II, is regulated by the "tubulin code"—a system of tubulin post-translational modifications (PTMs) including glutamylation. The glutamylase TTLL-11 and deglutamylase CCPP-1 fine-tune tubulin glutamylation levels in cilia, which in turn regulates motor protein activity and cargo transport (o’hagan2017glutamylationregulatestransport pages 4-5, o’hagan2017glutamylationregulatestransport pages 1-3). Interestingly, while CCPP-1-mediated regulation affects the velocities of OSM-3/KIF17 and KLP-6 (a kinesin-3 motor), it does not appear to directly affect the anterograde transport mediated by heterotrimeric kinesin-II (o’hagan2017glutamylationregulatestransport pages 4-5, o’hagan2017glutamylationregulatestransport pages 1-3). In vitro studies have shown that polyglutamylation of tubulin increases both the processivity and velocity of kinesin-2 motors (o’hagan2017glutamylationregulatestransport pages 7-8). The transport of the glutamylase TTLL-11 by ciliary kinesins creates a feedback mechanism whereby the motors transport the very enzyme that modifies the microtubule tracks on which they run (o’hagan2017glutamylationregulatestransport pages 9-10, o’hagan2017glutamylationregulatestransport pages 9-9).
KLP-20 functions within the intraflagellar transport pathway, which is central to ciliogenesis and ciliary homeostasis. The IFT pathway involves: (1) assembly of IFT trains (composed of IFT-A and IFT-B particle complexes) at the ciliary base; (2) anterograde transport by kinesin-2 motors (kinesin-II and OSM-3) delivering axonemal building blocks and signaling molecules to the ciliary tip; (3) cargo unloading and IFT train remodeling at the ciliary tip; and (4) retrograde transport by IFT dynein returning components to the base (prevo2017intraflagellartransportmechanisms pages 33-35, prevo2017intraflagellartransportmechanisms pages 15-17, verhey2011kinesinmotorsand pages 2-4). Heterotrimeric kinesin-II interacts with the IFT-B complex at the interface between the core and peripheral subcomplexes (nakayama2018ciliaryproteintrafficking pages 4-5).
The conservation of the heterotrimeric kinesin-II complex from nematodes to mammals underscores its fundamental importance in cilia biology. Mutations in ciliary genes, including those encoding IFT motors and their regulators, cause a growing class of pleiotropic human diseases known as ciliopathies. While KLP-20 itself is a C. elegans-specific gene name, its mammalian counterpart KIF3B is essential for ciliogenesis, and loss of KIF3B in mice results in a complete absence of cilia (nakayama2018ciliaryproteintrafficking pages 4-5).
KLP-20 is a kinesin-2 family motor protein that functions as one of the two motor subunits of the C. elegans heterotrimeric kinesin-II complex, together with KLP-11 and the accessory subunit KAP-1. Its primary molecular function is ATP-dependent, plus-end-directed translocation along ciliary microtubules, driving anterograde intraflagellar transport in all ciliated sensory neurons. KLP-20 cooperates with the homodimeric kinesin-2 motor OSM-3 to build the middle segments of sensory cilia, with a motor handover mechanism ensuring smooth cargo delivery along different ciliary compartments. The partial functional redundancy between kinesin-II and OSM-3 in C. elegans means that klp-20 single mutants maintain cilia structure, a feature distinct from most other organisms. KLP-20's activity is influenced by the tubulin code, including glutamylation of axonemal microtubules, and it operates within the broader IFT pathway that is essential for cilia assembly, maintenance, and sensory signaling.
References
(maguire2015myristoylatedcil7is pages 13-17): Julie Elizabeth Maguire. Myristoylated cil-7 is required for polycystin associated behaviors and extracellular vesicle biogenesis in c. elegans. ArXiv, Jan 2015. URL: https://doi.org/10.7282/t3cr5w7w, doi:10.7282/t3cr5w7w. This article has 0 citations.
(nakayama2018ciliaryproteintrafficking pages 4-5): Kazuhisa Nakayama and Yohei Katoh. Ciliary protein trafficking mediated by ift and bbsome complexes with the aid of kinesin-2 and dynein-2 motors. Journal of biochemistry, 163 3:155-164, Mar 2018. URL: https://doi.org/10.1093/jb/mvx087, doi:10.1093/jb/mvx087. This article has 160 citations and is from a peer-reviewed journal.
(verhey2011kinesinmotorsand pages 2-4): Kristen J. Verhey, John Dishinger, and Hooi Lynn Kee. Kinesin motors and primary cilia. Biochemical Society transactions, 39 5:1120-5, Oct 2011. URL: https://doi.org/10.1042/bst0391120, doi:10.1042/bst0391120. This article has 108 citations and is from a peer-reviewed journal.
(maguire2015myristoylatedcil7is pages 7-13): Julie Elizabeth Maguire. Myristoylated cil-7 is required for polycystin associated behaviors and extracellular vesicle biogenesis in c. elegans. ArXiv, Jan 2015. URL: https://doi.org/10.7282/t3cr5w7w, doi:10.7282/t3cr5w7w. This article has 0 citations.
(prevo2017intraflagellartransportmechanisms pages 33-35): Bram Prevo, Jonathan M. Scholey, and Erwin J. G. Peterman. Intraflagellar transport: mechanisms of motor action, cooperation, and cargo delivery. The FEBS Journal, 284:2905-2931, Sep 2017. URL: https://doi.org/10.1111/febs.14068, doi:10.1111/febs.14068. This article has 253 citations.
(prevo2017intraflagellartransportmechanisms pages 12-14): Bram Prevo, Jonathan M. Scholey, and Erwin J. G. Peterman. Intraflagellar transport: mechanisms of motor action, cooperation, and cargo delivery. The FEBS Journal, 284:2905-2931, Sep 2017. URL: https://doi.org/10.1111/febs.14068, doi:10.1111/febs.14068. This article has 253 citations.
(li2024regulationofciliary pages 3-5): Lin Li and Jie Ran. Regulation of ciliary homeostasis by intraflagellar transport-independent kinesins. Cell Death & Disease, Jan 2024. URL: https://doi.org/10.1038/s41419-024-06428-9, doi:10.1038/s41419-024-06428-9. This article has 21 citations and is from a peer-reviewed journal.
(prevo2017intraflagellartransportmechanisms pages 15-17): Bram Prevo, Jonathan M. Scholey, and Erwin J. G. Peterman. Intraflagellar transport: mechanisms of motor action, cooperation, and cargo delivery. The FEBS Journal, 284:2905-2931, Sep 2017. URL: https://doi.org/10.1111/febs.14068, doi:10.1111/febs.14068. This article has 253 citations.
(park2021cdklkinaseregulates pages 1-3): Kwangjin Park, Chunmei Li, Sofia Tsiropoulou, João Gonçalves, Christine Kondratev, Laurence Pelletier, Oliver E. Blacque, and Michel R. Leroux. Cdkl kinase regulates the length of the ciliary proximal segment. Current Biology, 31:2359-2373.e7, Jun 2021. URL: https://doi.org/10.1016/j.cub.2021.03.068, doi:10.1016/j.cub.2021.03.068. This article has 40 citations and is from a highest quality peer-reviewed journal.
(park2021cdklkinaseregulates pages 12-13): Kwangjin Park, Chunmei Li, Sofia Tsiropoulou, João Gonçalves, Christine Kondratev, Laurence Pelletier, Oliver E. Blacque, and Michel R. Leroux. Cdkl kinase regulates the length of the ciliary proximal segment. Current Biology, 31:2359-2373.e7, Jun 2021. URL: https://doi.org/10.1016/j.cub.2021.03.068, doi:10.1016/j.cub.2021.03.068. This article has 40 citations and is from a highest quality peer-reviewed journal.
(o’hagan2017glutamylationregulatestransport pages 4-5): Robert O’Hagan, Malan Silva, Ken C.Q. Nguyen, Winnie Zhang, Sebastian Bellotti, Yasmin H. Ramadan, David H. Hall, and Maureen M. Barr. Glutamylation regulates transport, specializes function, and sculpts the structure of cilia. Current biology : CB, 27:3430-3441.e6, Nov 2017. URL: https://doi.org/10.1016/j.cub.2017.09.066, doi:10.1016/j.cub.2017.09.066. This article has 119 citations.
(o’hagan2017glutamylationregulatestransport pages 1-3): Robert O’Hagan, Malan Silva, Ken C.Q. Nguyen, Winnie Zhang, Sebastian Bellotti, Yasmin H. Ramadan, David H. Hall, and Maureen M. Barr. Glutamylation regulates transport, specializes function, and sculpts the structure of cilia. Current biology : CB, 27:3430-3441.e6, Nov 2017. URL: https://doi.org/10.1016/j.cub.2017.09.066, doi:10.1016/j.cub.2017.09.066. This article has 119 citations.
(o’hagan2017glutamylationregulatestransport pages 7-8): Robert O’Hagan, Malan Silva, Ken C.Q. Nguyen, Winnie Zhang, Sebastian Bellotti, Yasmin H. Ramadan, David H. Hall, and Maureen M. Barr. Glutamylation regulates transport, specializes function, and sculpts the structure of cilia. Current biology : CB, 27:3430-3441.e6, Nov 2017. URL: https://doi.org/10.1016/j.cub.2017.09.066, doi:10.1016/j.cub.2017.09.066. This article has 119 citations.
(o’hagan2017glutamylationregulatestransport pages 9-10): Robert O’Hagan, Malan Silva, Ken C.Q. Nguyen, Winnie Zhang, Sebastian Bellotti, Yasmin H. Ramadan, David H. Hall, and Maureen M. Barr. Glutamylation regulates transport, specializes function, and sculpts the structure of cilia. Current biology : CB, 27:3430-3441.e6, Nov 2017. URL: https://doi.org/10.1016/j.cub.2017.09.066, doi:10.1016/j.cub.2017.09.066. This article has 119 citations.
(o’hagan2017glutamylationregulatestransport pages 9-9): Robert O’Hagan, Malan Silva, Ken C.Q. Nguyen, Winnie Zhang, Sebastian Bellotti, Yasmin H. Ramadan, David H. Hall, and Maureen M. Barr. Glutamylation regulates transport, specializes function, and sculpts the structure of cilia. Current biology : CB, 27:3430-3441.e6, Nov 2017. URL: https://doi.org/10.1016/j.cub.2017.09.066, doi:10.1016/j.cub.2017.09.066. This article has 119 citations.
klp-20 is one of the two motor subunits of heterotrimeric kinesin-II in C. elegans. Kinesin-II is the
heterotrimer KLP-11 + KLP-20 + KAP-1 (two distinct motor polypeptides + one non-motor accessory subunit KAP).
This is distinct from OSM-3, the homodimeric kinesin-2 that is the second anterograde IFT motor. klp-20 must be
kept distinct from its heterodimer partner klp-11 (KLP11_CAEEL) — much of the biochemistry was done on the
KLP-11/KLP-20 heterodimer, and where a result is specific to klp-11 alone I note it.
Which subunit of the heterodimer is the "unprocessive" one? PMID:20498083 shows the KLP-11/KLP-20 heterodimer
pairs a processive with an unprocessive motor domain and that the unprocessive subunit mediates asymmetric
autoregulation, but the abstract (only the abstract is cached; full text not available from PMC) does not, in the
cached text, assign the unprocessive/processive role to klp-20 vs klp-11 by name. So whether klp-20 itself is the
processive or the unprocessive head — and thus the residue-level basis of its individual duty ratio — is not
pinned down here. (Later biophysical work partly addresses this, but is not in our cache.)
klp-20-specific (vs klp-11-specific) contribution to autoinhibition / cargo release. UniProt annotates two
sites on klp-20 (444, 445) as "May be required for autoinhibition within the klp-11/klp-20 heterodimer"
(ECO:0000269|PubMed:20498083), but the mechanism by which klp-20 (as opposed to klp-11 or KAP-1) triggers
release of autoinhibition upon cargo binding is not resolved.
Direct ciliary cargo of the klp-20-containing motor. UniProt notes the kinesin-II complex delivers specific
ciliary cargo (e.g. che-3/dynein) to ciliary tips "likely mediated by IFT complexes A and B" (PMID:28479320) —
i.e. the direct, klp-20-motor-selected cargo repertoire is inferred through the IFT particle, not directly
enumerated for klp-20.
MF:
- GO:0003777 microtubule motor activity — 3 rows (IBA GO_REF:0000033; IEA GO_REF:0000120; IDA PMID:17000880).
Core. IDA is the strongest; MF is really plus-end-directed. ACCEPT the IDA as core; the IBA/IEA are redundant
same-term support (KEEP_AS_NON_CORE / ACCEPT). Propose GO:0008574 as the more specific MF in core_functions.
- GO:0016887 ATP hydrolysis activity (IBA) — ACCEPT, part of motor mechanism (supported by PMID:17000880 kinetics).
- GO:0005524 ATP binding (IEA) — ACCEPT (Walker A motif present; molecular-mechanism support).
- GO:0008017 microtubule binding — 2 rows (IBA, IEA) — ACCEPT (motor must bind MT track).
CC:
- GO:0030993 axonemal heterotrimeric kinesin-II complex (IPI PMID:17000880) — ACCEPT, core complex membership.
- GO:0016939 kinesin II complex (NAS PMID:20498083) — ACCEPT, complex membership (more general than 0030993).
- GO:0005871 kinesin complex (IBA) — ACCEPT/KEEP_AS_NON_CORE (general parent of the above).
- GO:0032991 protein-containing complex (IEA ARBA) — over-general; MARK_AS_OVER_ANNOTATED (root-level).
- GO:0005929 cilium (IEA) — ACCEPT, location (consistent with UniProt SUBCELLULAR LOCATION cilium).
- GO:0005874 microtubule (IBA) — KEEP_AS_NON_CORE (track, not really a "location" of the protein per se).
- GO:0005737 cytoplasm (IBA) — KEEP_AS_NON_CORE (broad; consistent with cytoplasm-by-similarity).
- GO:0005856 cytoskeleton (IEA) — KEEP_AS_NON_CORE (general).
- GO:1904115 axon cytoplasm (IEA GO_REF:0000108, inferred from GO:0008089) — this is inferred solely from the
anterograde axonal transport BP, which itself is an IBA over-propagation (see below). klp-20 acts in sensory
cilia, not documented axonal transport in worm. MARK_AS_OVER_ANNOTATED / KEEP_AS_NON_CORE.
BP:
- GO:0035720 intraciliary anterograde transport (NAS PMID:20498083) — ACCEPT, core.
- GO:0060271 cilium assembly (IBA) — ACCEPT/KEEP_AS_NON_CORE (kinesin-II builds the cilium foundation; PMID:17000880).
- GO:0007018 microtubule-based movement — 3 rows (IBA; IEA; IDA PMID:17000880; NAS PMID:20498083 also) — ACCEPT
(parent of the specific transport; IDA strongest). Somewhat general vs 0035720.
- GO:0008089 anterograde axonal transport (IBA) — the phylogenetic transfer from KIF3/kinesin-II in neurons brings
in an axonal-transport term. In C. elegans the documented role is ciliary IFT, not classical axonal transport;
this is a likely IBA over-propagation. MARK_AS_OVER_ANNOTATED (or KEEP_AS_NON_CORE) — but do NOT remove the
underlying experimental terms; this is the electronic/IBA one only.
Kinesin modeling (per task): model motor via in_complex (GO:0030993 axonemal heterotrimeric kinesin-II complex) +
contributes_to_molecular_function (GO:0008574 plus-end-directed MT motor / GO:0016887 ATP hydrolysis), keeping a
specific MT motor MF (not protein binding). Directly_involved_in: GO:0035720 intraciliary anterograde transport,
GO:0060271 cilium assembly.
id: Q965T6
gene_symbol: klp-20
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:6239
label: Caenorhabditis elegans
description: >-
klp-20 encodes one of the two motor subunits of heterotrimeric kinesin-II, the
anterograde intraflagellar transport (IFT) motor of Caenorhabditis elegans. It is a
member of the kinesin-2 subfamily with an N-terminal kinesin motor domain (P-loop
ATPase) and a C-terminal coiled-coil stalk. klp-20 does not act alone: it
heterodimerizes through its C-terminal stalk with the second motor subunit klp-11, and
this heterodimer associates with the non-motor accessory subunit kap-1 to form the
heterotrimeric kinesin-II holoenzyme (klp-11/klp-20/kap-1). Heterodimerization with
klp-11 is required to generate a processive motor and to bind kap-1, which links the
motor to IFT cargo. As part of kinesin-II the protein is an ATP-driven, microtubule
plus-end-directed motor that, together with the homodimeric kinesin-2 motor osm-3,
powers anterograde IFT along the middle (doublet) segment of sensory-neuron cilia,
building and maintaining the ciliary axoneme. It localizes to sensory cilia, including
the ciliary base and transition zone.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000108
title: Automatic assignment of GO terms using logical inference, based on on inter-ontology links
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:17000880
title: Mechanism of transport of IFT particles in C. elegans cilia by the concerted action of kinesin-II and OSM-3 motors.
findings:
- statement: >-
Purified recombinant kinesin-II behaves as a monodisperse heterotrimer of the
KLP-11, KLP-20 and KAP-1 subunits (native mass ~287 kD, 1:1:1 stoichiometry),
establishing klp-20 as a subunit of the heterotrimeric kinesin-II complex.
supporting_text: "the KLP-11, KAP-1, and KLP-20 subunits elute as a monodisperse heterotrimeric complex"
reference_section_type: RESULTS
- statement: >-
Kinesin-II (containing klp-20) is an ATP-driven microtubule motor; in gliding
assays it moves microtubules and uses Mg-ATP by Michaelis-Menten kinetics.
supporting_text: "indicating that Mg-ATP is the preferred substrate for kinesin-2 motors"
reference_section_type: RESULTS
- statement: >-
Kinesin-II and OSM-3 are the two anterograde IFT motors that redundantly move
IFT particles to build the sensory cilium foundation.
supporting_text: "two anterograde IFT motors called kinesin-II and OSM-3"
reference_section_type: INTRODUCTION
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Full text cached (PMC2064394). Directly names KLP-20 as a subunit of the purified
heterotrimeric kinesin-II holoenzyme and characterizes its motor/ATPase activity
and role in anterograde IFT. Source of the WormBase IDA (GO:0003777) and IPI
(GO:0030993) annotations.
- id: PMID:20498083
title: Regulation of a heterodimeric kinesin-2 through an unprocessive motor domain that is turned processive by its partner.
findings:
- statement: >-
The KLP-11/KLP-20 heterodimer pairs an unprocessive with a processive motor
domain; heterodimerization generates processivity.
supporting_text: "One motor domain is unprocessive as a homodimer"
reference_section_type: ABSTRACT
- statement: >-
Heterodimerization of klp-20 with klp-11 is required to bind KAP-1, the in vivo
link between the motor and its cargo.
supporting_text: "heterodimerization is necessary to bind KAP1, the in vivo link between motor and"
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Abstract-only cache (full text not available from PMC2890855). Studies the
C. elegans KLP-11/KLP-20 heterodimer directly; establishes that processivity and
KAP-1 (cargo) binding require heterodimerization, and that the motor is
autoregulated. Source of the ComplexPortal NAS annotations.
existing_annotations:
- term:
id: GO:0003777
label: microtubule motor activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
Phylogenetic (IBA) support for microtubule motor activity, redundant with the
experimental IDA below (PMID:17000880). Correct core molecular function of the
kinesin motor domain. The more specific term is plus-end-directed microtubule
motor activity (GO:0008574), captured in core_functions.
action: ACCEPT
supported_by:
- reference_id: PMID:17000880
supporting_text: "indicating that Mg-ATP is the preferred substrate for kinesin-2 motors"
reference_section_type: RESULTS
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
Broad cytoplasmic localization consistent with UniProt (Cytoplasm, cytoskeleton by
similarity), but uninformative relative to the specific ciliary localization. Keep
as non-core context.
action: KEEP_AS_NON_CORE
- term:
id: GO:0008017
label: microtubule binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
Microtubule binding is intrinsic to the kinesin motor domain and required for the
motor to engage its track. Correct and consistent with plus-end-directed motor
activity; retained as a supporting molecular function.
action: ACCEPT
- term:
id: GO:0060271
label: cilium assembly
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
Kinesin-II (with klp-20 as a motor subunit) and osm-3 move IFT particles that
redundantly build the sensory cilium foundation, so involvement in cilium assembly
is well supported. Accept as a core biological process.
action: ACCEPT
supported_by:
- reference_id: PMID:17000880
supporting_text: "either motor but not both being dispensable for this function"
reference_section_type: INTRODUCTION
- term:
id: GO:0005871
label: kinesin complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: part_of
review:
summary: >-
Correct but general parent of the specific complex membership. klp-20 is a subunit
of the (axonemal heterotrimeric) kinesin-II complex; the specific terms
GO:0016939/GO:0030993 are preferred. Keep as non-core.
action: KEEP_AS_NON_CORE
- term:
id: GO:0005874
label: microtubule
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
The microtubule is the motor's track rather than a distinct cellular location of
the protein. Consistent with function but non-core; the informative location is the
cilium.
action: KEEP_AS_NON_CORE
- term:
id: GO:0016887
label: ATP hydrolysis activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
ATP hydrolysis powers the kinesin motor; the motor domain of klp-20 contains the
P-loop (Walker A) ATPase site, and purified kinesin-II shows Mg-ATP-dependent
motility with Michaelis-Menten kinetics (PMID:17000880). Accept as part of the
core motor mechanism.
action: ACCEPT
supported_by:
- reference_id: PMID:17000880
supporting_text: "kinesin-II–driven motility conformed to Michaelis-Menten kinetics"
reference_section_type: RESULTS
- term:
id: GO:0008089
label: anterograde axonal transport
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
This term is a phylogenetic transfer from kinesin-II orthologs (KIF3) that act in
neuronal axonal transport. In C. elegans the documented role of klp-20/kinesin-II
is anterograde intraflagellar (ciliary) transport, not classical axonal cargo
transport; there is no experimental evidence for a klp-20 axonal-transport role in
worm. Treated as an over-propagated electronic inference; the accurate specific
term is intraciliary anterograde transport (GO:0035720).
action: MARK_AS_OVER_ANNOTATED
propagation_review:
root_cause: TERM_SCOPING_PROBLEM
failure_modes:
- CONTEXT_OR_TISSUE_MISMATCH
- GRANULARITY_MISMATCH
source_entities:
- source_id: FB:FBgn0004380
source_label: Klp64D (Drosophila kinesin-II KIF3A ortholog)
source_status: SUPPORTS_SOURCE_BUT_NOT_TARGET
comment: >-
Kinesin-II orthologs act in neuronal anterograde axonal transport, but the
documented C. elegans klp-20 role is anterograde intraciliary transport, not
axonal cargo transport; the axon-specific term does not transfer.
- source_id: PANTHER:PTN000650181
source_label: kinesin-2 anterograde-transport node
source_status: SUPPORTS_SOURCE_BUT_NOT_TARGET
comment: >-
Node-level anterograde-transport inference; the ciliary (GO:0035720) rather
than axonal (GO:0008089) child is the correct scoping for klp-20.
- term:
id: GO:0003777
label: microtubule motor activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: >-
Electronic (InterPro/ARBA) support for microtubule motor activity, redundant with
the experimental IDA (PMID:17000880) and the IBA above. Correct core molecular
function.
action: ACCEPT
- term:
id: GO:0005524
label: ATP binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: >-
ATP binding via the conserved P-loop/Walker A motif of the kinesin motor domain
(UniProt BINDING 91..98). Correct molecular-mechanism support for the ATP-driven
motor; retained as supporting.
action: ACCEPT
- term:
id: GO:0005856
label: cytoskeleton
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: >-
General cytoskeletal localization from an electronic subcellular-location rule.
Consistent with a microtubule motor but non-specific; the informative location is
the cilium.
action: KEEP_AS_NON_CORE
- term:
id: GO:0005929
label: cilium
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: >-
Ciliary localization is well established: klp-20/kinesin-II functions in sensory
cilia and UniProt records SUBCELLULAR LOCATION cilium (localizing to the base and
transition zone; PMID:28479320). Accept as a core cellular location.
action: ACCEPT
- term:
id: GO:0007018
label: microtubule-based movement
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: involved_in
review:
summary: >-
Electronic support for microtubule-based movement, redundant with the experimental
IDA (PMID:17000880). Correct but general; the specific process is intraciliary
anterograde transport (GO:0035720). Accept.
action: ACCEPT
- term:
id: GO:0008017
label: microtubule binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: >-
Electronic (InterPro) support for microtubule binding, redundant with the IBA
above and intrinsic to the motor domain. Accept as supporting molecular function.
action: ACCEPT
- term:
id: GO:0032991
label: protein-containing complex
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: part_of
review:
summary: >-
Root-level complex membership from an ARBA rule. True (klp-20 is part of
kinesin-II) but uninformative; the specific complex terms GO:0016939 and GO:0030993
supersede it. Over-annotated at this level of generality.
action: MARK_AS_OVER_ANNOTATED
- term:
id: GO:1904115
label: axon cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000108
qualifier: located_in
review:
summary: >-
Inferred logically (GO_REF:0000108) from the anterograde axonal transport
annotation (GO:0008089), which is itself an over-propagated phylogenetic transfer.
klp-20 acts in sensory cilia in C. elegans, not documented axoplasm; this location
is a downstream consequence of the over-annotated axonal-transport term.
action: MARK_AS_OVER_ANNOTATED
- term:
id: GO:0007018
label: microtubule-based movement
evidence_type: NAS
original_reference_id: PMID:20498083
qualifier: involved_in
review:
summary: >-
ComplexPortal NAS annotation for microtubule-based movement, supported by the
biophysical characterization of the KLP-11/KLP-20 heterodimer motor. Correct but
general relative to intraciliary anterograde transport; accept.
action: ACCEPT
supported_by:
- reference_id: PMID:20498083
supporting_text: "One motor domain is unprocessive as a homodimer"
reference_section_type: ABSTRACT
- term:
id: GO:0016939
label: kinesin II complex
evidence_type: NAS
original_reference_id: PMID:20498083
qualifier: part_of
review:
summary: >-
klp-20 is a subunit of the kinesin II complex (the klp-11/klp-20/kap-1
heterotrimer). Directly supported: heterodimerization of klp-20 with klp-11 is
required to bind kap-1 (PMID:20498083), and the purified heterotrimer was
characterized in PMID:17000880. Accept as core complex membership; the axonemal
term GO:0030993 is the most specific.
action: ACCEPT
supported_by:
- reference_id: PMID:20498083
supporting_text: "heterodimerization is necessary to bind KAP1, the in vivo link between motor and"
reference_section_type: ABSTRACT
- term:
id: GO:0035720
label: intraciliary anterograde transport
evidence_type: NAS
original_reference_id: PMID:20498083
qualifier: involved_in
review:
summary: >-
Anterograde IFT is the core biological process of kinesin-II. As a kinesin-II motor
subunit, klp-20 drives base-to-tip transport of IFT particles along sensory cilia
together with osm-3. Accept as a core process.
action: ACCEPT
supported_by:
- reference_id: PMID:17000880
supporting_text: "two anterograde IFT motors called kinesin-II and OSM-3"
reference_section_type: INTRODUCTION
- term:
id: GO:0003777
label: microtubule motor activity
evidence_type: IDA
original_reference_id: PMID:17000880
qualifier: enables
review:
summary: >-
Direct experimental (IDA) annotation from characterization of purified kinesin-II,
which contains klp-20 as one of its two motor subunits and moves microtubules in an
ATP-dependent manner. This is the strongest evidence for the core molecular
function. The most specific term is plus-end-directed microtubule motor activity
(GO:0008574), used in core_functions.
action: ACCEPT
supported_by:
- reference_id: PMID:17000880
supporting_text: "the KLP-11, KAP-1, and KLP-20 subunits elute as a monodisperse heterotrimeric complex"
reference_section_type: RESULTS
- term:
id: GO:0007018
label: microtubule-based movement
evidence_type: IDA
original_reference_id: PMID:17000880
qualifier: involved_in
review:
summary: >-
Direct experimental annotation for microtubule-based movement from the kinesin-II
gliding assays. Correct; general relative to intraciliary anterograde transport but
experimentally solid. Accept.
action: ACCEPT
supported_by:
- reference_id: PMID:17000880
supporting_text: "indicating that Mg-ATP is the preferred substrate for kinesin-2 motors"
reference_section_type: RESULTS
- term:
id: GO:0030993
label: axonemal heterotrimeric kinesin-II complex
evidence_type: IPI
original_reference_id: PMID:17000880
qualifier: part_of
review:
summary: >-
Direct physical-interaction (IPI) evidence that klp-20 is a subunit of the axonemal
heterotrimeric kinesin-II complex, purified as a monodisperse heterotrimer of
KLP-11/KLP-20/KAP-1 (with WormBase klp-11 and kap-1 as the with/from partners).
This is the most specific and best-supported complex-membership term and the core
cellular-component annotation.
action: ACCEPT
supported_by:
- reference_id: PMID:17000880
supporting_text: "consisting of 1 mol each of its subunits KLP-11, KLP-20, and KAP-1 with a native molecular mass of 287 kD"
reference_section_type: RESULTS
- term:
id: GO:0008574
label: plus-end-directed microtubule motor activity
evidence_type: IDA
original_reference_id: PMID:17000880
qualifier: enables
review:
summary: >-
Proposed refinement of the experimental microtubule motor activity annotation
(GO:0003777, IDA, PMID:17000880) to the more specific plus-end-directed microtubule
motor activity. Kinesins are plus-end-directed motors and kinesin-II (with klp-20)
drives anterograde (base-to-tip, plus-end-directed) IFT; the purified motor moves
microtubules in gliding assays. This is the primary core molecular function.
action: NEW
supported_by:
- reference_id: PMID:17000880
supporting_text: "kinesin-II alone moved MTs at a maximal rate of 0.3"
reference_section_type: RESULTS
core_functions:
- description: >-
As one of the two motor subunits of heterotrimeric kinesin-II (klp-11/klp-20/kap-1),
klp-20 contributes to the ATP-driven, microtubule plus-end-directed motor activity of
the complex. klp-20 heterodimerizes with klp-11 through its C-terminal coiled-coil
stalk; this heterodimer is processive and binds the accessory subunit kap-1, which
couples the motor to IFT cargo. The motor moves along the doublet microtubules of the
sensory-cilium middle segment.
molecular_function:
id: GO:0008574
label: plus-end-directed microtubule motor activity
contributes_to_molecular_function:
id: GO:0008574
label: plus-end-directed microtubule motor activity
in_complex:
id: GO:0030993
label: axonemal heterotrimeric kinesin-II complex
directly_involved_in:
- id: GO:0035720
label: intraciliary anterograde transport
- id: GO:0060271
label: cilium assembly
locations:
- id: GO:0005929
label: cilium
supported_by:
- reference_id: PMID:17000880
supporting_text: "the KLP-11, KAP-1, and KLP-20 subunits elute as a monodisperse heterotrimeric complex"
reference_section_type: RESULTS
- reference_id: PMID:20498083
supporting_text: "heterodimerization is necessary to bind KAP1, the in vivo link between motor and"
reference_section_type: ABSTRACT
- description: >-
The kinesin motor domain of klp-20 hydrolyzes ATP to power microtubule-based
movement. Purified kinesin-II (containing klp-20) uses Mg-ATP as its preferred
substrate with Michaelis-Menten kinetics, and klp-20 carries the conserved P-loop
(Walker A) ATP-binding motif.
molecular_function:
id: GO:0016887
label: ATP hydrolysis activity
contributes_to_molecular_function:
id: GO:0016887
label: ATP hydrolysis activity
in_complex:
id: GO:0030993
label: axonemal heterotrimeric kinesin-II complex
supported_by:
- reference_id: PMID:17000880
supporting_text: "indicating that Mg-ATP is the preferred substrate for kinesin-2 motors"
reference_section_type: RESULTS
knowledge_gaps:
- gap_statement: >-
Within the klp-11/klp-20 heterodimer it is not resolved which subunit is the
"unprocessive" motor domain and which is the processive one — i.e. whether klp-20
itself is the processive or the autoinhibited/unprocessive head, and the
residue-level basis of its individual duty ratio.
boundary: >-
It is established that heterodimerization of the two distinct C. elegans kinesin-2
motor domains converts an otherwise unprocessive homodimer into a processive
heterodimer, that the unprocessive subunit mediates an asymmetric autoregulation of
motor activity, and that the heterodimer must form to bind kap-1 (the cargo link).
UniProt annotates two klp-20 residues (444, 445) as possibly required for
autoinhibition within the heterodimer.
gap_kind:
- BIOLOGY
dark_aspect: RESIDUAL_SUBGAP
status: OPEN
significance: >-
Kinesin-2 heterodimerization is the paradigm for how obligate motor heterodimers
tune processivity and autoregulation; assigning the processive vs unprocessive role
to klp-20 vs klp-11 defines the mechanistic division of labor of the anterograde IFT
motor.
resolution: >-
Single-molecule processivity assays on defined homodimeric vs heterodimeric
constructs of the klp-20 and klp-11 motor domains, with subunit-specific labeling and
head-tracking to assign duty ratio to each subunit.
provenance:
- reference_id: PMID:20498083
supporting_text: "One motor domain is unprocessive as a homodimer"
reference_section_type: ABSTRACT
- reference_id: PMID:20498083
supporting_text: "asymmetric autoregulation of the motor"
reference_section_type: ABSTRACT
- gap_statement: >-
The direct, klp-20-motor-selected ciliary cargo repertoire is not enumerated: what
cargoes the klp-20-containing kinesin-II specifically delivers is inferred through the
IFT-A/IFT-B particle rather than measured for the motor itself.
boundary: >-
Kinesin-II (with klp-20 as a motor subunit) and osm-3 are the two anterograde IFT
motors that move IFT particles to build the sensory cilium foundation; kap-1 provides
the in vivo link between the motor and cargo.
gap_kind:
- BIOLOGY
- CURATION
dark_aspect: BP_DARK
status: OPEN
significance: >-
Defining the motor-specific cargo would clarify how the two anterograde IFT motors
(kinesin-II vs osm-3) divide cargo responsibilities along the ciliary axoneme, which
is central to understanding ciliogenesis and ciliopathy.
resolution: >-
Proximity labeling or cargo-trapping proteomics on the klp-20/kap-1 motor in cilia,
combined with klp-20 loss-of-function IFT imaging to identify cargoes whose ciliary
delivery specifically requires the klp-20-containing motor.
provenance:
- reference_id: PMID:20498083
supporting_text: "heterodimerization is necessary to bind KAP1, the in vivo link between motor and"
reference_section_type: ABSTRACT
suggested_questions:
- question: >-
Within the klp-11/klp-20 heterodimer, which motor domain is the processive one and
which is unprocessive, and how do the two heads cooperate to set the ~0.5 um/s in vivo
velocity of kinesin-II?
- question: >-
How does cargo binding to kap-1 relieve the tail-mediated autoinhibition of the
klp-11/klp-20 heterodimer, and what is the specific contribution of the klp-20 tail
(residues 444-445 and the 525-550 klp-11 interaction region)?
suggested_experiments:
- description: >-
Single-molecule motility (TIRF) comparison of purified klp-20 homodimer, klp-11
homodimer, and klp-11/klp-20 heterodimer with subunit-specific fluorophores, to
assign processivity and duty ratio to each subunit and test the
asymmetric-autoregulation model.
hypothesis: >-
klp-20 and klp-11 have different intrinsic processivities, and one specific subunit
is the unprocessive, autoregulatory head.
- description: >-
In vivo IFT imaging (kymography of fluorescently tagged IFT components) in klp-20
loss-of-function versus osm-3 loss-of-function animals to define the cargoes and
axonemal segments whose transport specifically depends on the klp-20-containing
kinesin-II motor.
hypothesis: >-
The klp-20-containing kinesin-II motor is specifically required for anterograde
transport of a defined subset of IFT cargoes along the middle (doublet) segment.
tags:
- caeel-ciliopathy