ESA1

UniProt ID: Q08649
Organism: Saccharomyces cerevisiae S288C
Review Status: COMPLETE
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Gene Description

ESA1 (Essential SAS2-related acetyltransferase 1) is the catalytic subunit of the NuA4 histone acetyltransferase complex. It catalyzes acetylation of histone H4 (at K5, K8, K12, K16), H3 (K14), H2B (K16), H2A (K4, K7), and the variant H2A.Z (K14), as well as non-histone substrates including ATG3 and PAH1. ESA1 is essential for transcriptional activation, DNA double-strand break repair, cell cycle progression, and chromatin organization. The protein also contributes crotonyl-CoA transferase activity in Piccolo NuA4.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0000785 chromatin
IBA
GO_REF:0000033
ACCEPT
Summary: ESA1 is a core component of the NuA4 complex that acts on chromatin substrates. Phylogenetic inference (IBA) correctly identifies chromatin as the cellular location where ESA1 functions through nucleosome acetylation.
Reason: ESA1 functions directly on chromatin through histone acetylation. Multiple experimental sources confirm NuA4 recruitment to chromatin and nucleosome-level acetylation patterns. The IBA evidence is conservative but appropriate.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN004172926 · MYST/KAT acetyltransferase ancestral node SUPPORTS TRANSFER
The current PTHR10615 broad MYST/KAT node supports chromatin as the activity context for ESA1 and related nuclear histone acetyltransferases; yeast Esa1 directly seeds this conserved chromatin assertion.
Supporting Evidence:
PMID:21984211
We have used EM and biochemistry to characterize the structure of NuA4, an essential yeast histone acetyltransferase (HAT) complex conserved throughout eukaryotes, and we have determined the interaction of NuA4 with the nucleosome core particle (NCP).
GO:0000785 chromatin
IDA
PMID:10911987
Multiple links between the NuA4 histone acetyltransferase co...
ACCEPT
Summary: Direct experimental evidence (IDA) confirms ESA1 localizes to and functions on chromatin. This duplicate annotation with IBA provides independent confirmation.
Reason: Multiple evidence codes for the same essential localization strengthen the annotation. IDA from PMID:10911987 provides direct experimental documentation.
Supporting Evidence:
PMID:10911987
Accordingly, NuA4 is localized in precise loci within the nucleus and does not overlap with the silent chromatin marker Sir3.
GO:0005634 nucleus
IBA
GO_REF:0000033
ACCEPT
Summary: ESA1 is a nuclear protein required for nuclear transcriptional and DNA repair processes. IBA annotation appropriately identifies the nucleus as the functional compartment.
Reason: ESA1 participates in nuclear-localized processes (transcription, DNA repair, cell cycle). Nuclear localization is essential and well-documented.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN004172926 · MYST/KAT acetyltransferase ancestral node SUPPORTS TRANSFER
The current PTHR10615 broad MYST/KAT node supports nuclear localization for ESA1-family chromatin acetyltransferases and transfers safely to yeast Esa1.
GO:0005634 nucleus
NAS
PMID:24843044
Eaf5/7/3 form a functionally independent NuA4 submodule link...
ACCEPT
Summary: NAS (narrative assertion) evidence from PMID:24843044 confirms nuclear localization. Redundant with IBA but provides independent literature support.
Reason: Multiple evidence codes strengthen localization annotation. NAS documentation is appropriate for established compartment assignment.
Supporting Evidence:
PMID:24843044
The NuA4 histone acetyltransferase complex is required for gene regulation, cell cycle progression, and DNA repair.
GO:0004402 histone acetyltransferase activity
IBA
GO_REF:0000033
ACCEPT
Summary: ESA1 is the defining histone acetyltransferase of the NuA4 complex. IBA annotation captures the fundamental catalytic function through phylogenetic inference.
Reason: This is ESA1's defining enzymatic function. Extensive literature demonstrates HAT activity on all conserved H4 lysines and additional histone tails. IBA reflects phylogenetic conservation of this catalytic function across eukaryotic orthologs.
GO:0004402 histone acetyltransferase activity
IEA
GO_REF:0000120
ACCEPT
Summary: Computational inference (IEA) based on InterPro domain IPR002717 (HAT_MYST-type) independently confirms HAT activity.
Reason: ESA1 contains the MYST HAT catalytic domain and has experimental HAT activity. IEA based on domain analysis is appropriate and provides independent evidence.
GO:0004402 histone acetyltransferase activity
IDA
PMID:17274630
Nucleosome recognition by the Piccolo NuA4 histone acetyltra...
ACCEPT
Summary: Direct experimental evidence (IDA) from nucleosome recognition and acetyltransferase activity studies confirms HAT activity.
Reason: IDA evidence from Piccolo NuA4 complex study demonstrates direct enzymatic activity on nucleosomal substrates. Multiple evidence codes strengthen this essential annotation.
Supporting Evidence:
PMID:17274630
the H2A, H3, and H2B tails do not influence the ability of picNuA4 to tetra-acetylate the H4 tail within the nucleosome
GO:0004402 histone acetyltransferase activity
IMP
PMID:10487762
NuA4, an essential transcription adaptor/histone H4 acetyltr...
ACCEPT
Summary: Mutational analysis (IMP) shows esa1 mutations abolish acetyltransferase activity in vitro and in vivo.
Reason: Temperature-sensitive esa1 mutants and catalytic site mutations document HAT activity through loss-of-function studies.
Supporting Evidence:
PMID:10487762
Antibodies against Esa1p specifically immunoprecipitate NuA4 activity whereas the complex purified from a temperature-sensitive esa1 mutant loses its acetyltransferase activity at the restrictive temperature.
GO:0010485 histone H4 acetyltransferase activity
IEA
GO_REF:0000117
ACCEPT
Summary: ARBA machine learning inference (IEA) identifies H4 as the primary histone substrate. This is the most mechanistically informative histone acetylation annotation.
Reason: ESA1's defining activity is H4 acetylation at K5, K8, K12, K16. This specific substrate annotation is more informative than the generic GO:0004402. IEA inference is appropriate given clear mechanistic focus on H4.
GO:0010485 histone H4 acetyltransferase activity
IDA
PMID:12110674
A conserved motif common to the histone acetyltransferase Es...
ACCEPT
Summary: Direct experimental evidence (IDA) from domain mutagenesis studies identifies the ESA1-RPD3 motif as essential for H4 acetyltransferase activity.
Reason: IDA from PMID:12110674 provides mechanistic details through mutagenesis of specific residues (W247, N250, L251, etc.) that abolish H4 acetylation activity. This is strong experimental support for H4-specific activity.
Supporting Evidence:
PMID:12110674
We did alanine-scanning mutagenesis and found that the ER motif regions of Esa1 or Rpd3 are required for HAT activity of Esa1 or HDAC activity of Rpd3, respectively.
GO:0061733 protein-lysine-acetyltransferase activity
IEA
GO_REF:0000120
ACCEPT
Summary: Computational annotation (IEA) based on EC 2.3.1.48 mapping captures ESA1's ability to acetylate both histone and non-histone protein substrates.
Reason: UniProt EC classification 2.3.1.48 directly maps to 'protein-lysine-acetyltransferase'. This formal enzymatic classification is appropriate and allows inclusion of emerging non-histone substrate functions.
GO:0061733 protein-lysine-acetyltransferase activity
IDA
PMID:29765047
Tip60-mediated lipin 1 acetylation and ER translocation dete...
ACCEPT
Summary: Direct experimental evidence (IDA) demonstrates ESA1-mediated acetylation of the non-histone protein PAH1 (lipin) with functional consequences for fatty acid synthesis.
Reason: IDA from PMID:29765047 documents non-histone substrate acetylation. Multiple evidence codes strengthen this broader substrate annotation.
Supporting Evidence:
PMID:29765047
Two acetylation sites, Lys496 and Lys801, were found as the major acetylation sites on PAH1 targeted by ESA1
GO:0106226 peptide 2-hydroxyisobutyryltransferase activity
IEA
GO_REF:0000116
UNDECIDED
Summary: Computational annotation (IEA) based on Rhea enzymatic reaction mapping infers 2-hydroxyisobutyryltransferase activity from fission yeast Mst1. However, in vivo activity in budding yeast is undocumented.
Reason: UniProt documents potential 2-hydroxyisobutyrylation capability based on sequence homology to Schizosaccharomyces pombe Mst1 (O94446), the SF218 ESA1 ortholog. However: (1) the evidence is sequence-based rather than experimental for budding yeast Esa1; (2) biological relevance in budding yeast is unclear; (3) no literature documents in vivo 2-hydroxyisobutyrylation by Esa1 in budding yeast. Annotation reflects ortholog capability but lacks direct experimental support.
GO:0140064 peptide crotonyltransferase activity
IEA
GO_REF:0000116
ACCEPT
Summary: Computational annotation (IEA) based on Rhea enzymatic reaction RHEA:53908 appropriately identifies crotonyl-CoA transferase activity.
Reason: PMID:31699900 directly demonstrates ESA1 catalyzes histone crotonylation in vivo. Rhea mapping is appropriate for this documented biochemical activity.
GO:0140068 histone crotonyltransferase activity
IDA
PMID:31699900
Gcn5 and Esa1 function as histone crotonyltransferases to re...
ACCEPT
Summary: Direct experimental evidence (IDA) from PMID:31699900 demonstrates ESA1-catalyzed histone crotonylation as a documented biochemical function.
Reason: PMID:31699900 directly shows Piccolo NuA4 crotonyltransferase activity toward nucleosomes in vitro, and the catalytically dead Esa1-E338Q substitution abrogates this activity. IDA evidence is strong and direct.
Supporting Evidence:
PMID:31699900
The Piccolo NuA4 complex, similar to the ADA complex, also exhibited crotonyltransferase activity toward nucleosomes in a manner dependent on its catalytic activity
GO:0016740 transferase activity
IEA
GO_REF:0000043
KEEP AS NON CORE
Summary: Generic annotation identifying ESA1 as a transferase enzyme. Technically correct but overly general and subsumed by more specific acetyltransferase annotations.
Reason: While accurate (acetyltransferases are transferases), this annotation is uninformative and redundant with GO:0004402 and GO:0061733. Should not be displayed as primary annotation but acceptable as ancestor term coverage.
GO:0003712 transcription coregulator activity
IBA
GO_REF:0000033
ACCEPT
Summary: ESA1 as part of NuA4 functions as a transcription coregulator by acetylating histones and facilitating RNA Pol II activity. IBA annotation appropriately identifies this molecular function role.
Reason: ESA1 is not a core promoter component but rather a regulatory enzyme recruited by transcription factors. It modulates transcription through chromatin remodeling - the definition of a coregulator. IBA evidence is appropriate for this conserved function.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN004172926 · MYST/KAT acetyltransferase ancestral node SUPPORTS TRANSFER
The current PTHR10615 broad MYST/KAT node supports transcription coregulator activity for ESA1-family chromatin acetyltransferases, matching Esa1's NuA4-dependent regulation of Pol II transcription.
GO:0003712 transcription coregulator activity
IDA
PMID:31699900
Gcn5 and Esa1 function as histone crotonyltransferases to re...
ACCEPT
Summary: IDA evidence from crotonylation paper documents transcription coregulator function through histone modification. Multiple evidence codes strengthen this essential annotation.
Reason: PMID:31699900 demonstrates ESA1-catalyzed histone modifications that regulate transcription, confirming coregulator status through mechanism.
Supporting Evidence:
PMID:31699900
Thus, we identify the Gcn5- and Esa1-containing ADA and Piccolo NuA4 complexes as bona fide crotonyltransferases that promote crotonylation-dependent transcription.
GO:0003682 chromatin binding
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Chromatin binding is plausible for ESA1 but too generic to represent a core mechanistic function.
Reason: Esa1 does associate with chromatin as the catalytic subunit of NuA4/Piccolo NuA4, so the term is true, but chromatin binding here is a consequence of substrate engagement by the complex rather than a separately characterised binding activity of Esa1. No more specific descendant binding term is supported by the evidence, so the term is retained at this level as peripheral to the core H4 acetyltransferase activity.
Propagation Review
Root cause: NO FAILURE NON CORE
Sources checked:
PANTHER:PTN004172926 · MYST/KAT acetyltransferase ancestral node SUPPORTS TRANSFER
The current PTHR10615 broad MYST/KAT node supports conserved chromatin association. For ESA1 this is true but secondary to the more informative histone acetyltransferase and chromatin-location assertions.
GO:0006281 DNA repair
IEA
GO_REF:0000043
ACCEPT
Summary: ESA1 is required for DNA double-strand break repair through H4 acetylation enabling repair machinery accessibility. IEA annotation based on UniProt 'DNA repair' keyword is appropriate.
Reason: PMID:12353039 provides strong experimental evidence for DNA repair requirement. IEA from keyword is conservative but appropriate for this well-documented function.
GO:0006281 DNA repair
IMP
PMID:12353039
Acetylation of histone H4 by Esa1 is required for DNA double...
ACCEPT
Summary: Mutational analysis (IMP) directly demonstrates that esa1 mutations result in DNA repair defects. This is the strongest evidence for DNA repair function.
Reason: PMID:12353039 shows temperature-sensitive esa1 mutants are defective in both nonhomologous end joining and replication-coupled repair. Mutational analysis provides definitive functional proof.
Supporting Evidence:
PMID:12353039
Both pathways require the ESA1 histone acetyl transferase (HAT), which is responsible for acetylating all H4 tail lysines, including ectopic lysines that restore repair capacity to a mutant H4 tail.
GO:0006281 DNA repair
IDA
PMID:16135807
Regulation of NuA4 histone acetyltransferase activity in tra...
ACCEPT
Summary: IDA evidence from phosphorylation regulation study documents NuA4/ESA1 involvement in DNA repair. Multiple evidence codes strengthen this critical annotation.
Reason: PMID:16135807 'Regulation of NuA4 histone acetyltransferase activity in transcription and DNA repair' documents functional role through direct experimental analysis.
Supporting Evidence:
PMID:16135807
Chromatin immunoprecipitation experiments also link local phosphorylation of H4 with its deacetylation, during both transcription and DNA repair.
GO:0006281 DNA repair
IGI
PMID:25628362
A moonlighting metabolic protein influences repair at DNA do...
ACCEPT
Summary: Genetic interaction (IGI) evidence documents functional relationship between ESA1 and DNA repair machinery components.
Reason: IGI evidence provides functional validation of repair requirement. However, IMP evidence from PMID:12353039 is more direct.
Supporting Evidence:
PMID:25628362
Lys20 was recruited to sites of DNA damage, and its overexpression promoted enhanced recruitment of the INO80 remodeling complex to restore normal histone eviction at the damage sites.
GO:0006974 DNA damage response
IEA
GO_REF:0000043
ACCEPT
Summary: ESA1 is specifically recruited to DNA damage sites and activated in response to DSBs. IEA annotation from UniProt 'DNA damage' keyword is appropriate.
Reason: PMID:12353039 and other literature show Arp4 component of NuA4 is recruited to DSBs and ESA1 activity is required for repair response. This is a well-documented DNA damage response function.
GO:0006325 chromatin organization
IEA
GO_REF:0000043
ACCEPT
Summary: Histone acetylation fundamentally alters chromatin structure by disrupting histone-DNA contacts and affecting nucleosome positioning. ESA1-catalyzed acetylation contributes to chromatin organization.
Reason: Histone acetylation is a key mechanism for chromatin remodeling and nucleosome organization. IEA inference from 'chromatin' keyword is appropriate for this mechanistic consequence of HAT activity.
GO:0006351 DNA-templated transcription
IEA
GO_REF:0000043
KEEP AS NON CORE
Summary: While ESA1 does affect transcription through chromatin modifications, it is not a core transcription component. This annotation inappropriately suggests ESA1 performs transcription rather than regulating it.
Reason: Annotation is not incorrect but lacks specificity and may be misleading. ESA1's role is regulatory (GO:0006357, GO:0032968), not core transcriptional machinery (GO:0006351). IEA inference from UniProt 'Chromatin' and 'DNA repair' keywords led to automatic broad annotation. Prefer more specific regulatory terms.
GO:0006351 DNA-templated transcription
NAS
PMID:24843044
Eaf5/7/3 form a functionally independent NuA4 submodule link...
MARK AS OVER ANNOTATED
Summary: NAS evidence from PMID:24843044 broadly connects NuA4 to gene regulation, but DNA-templated transcription is too general beside Esa1's accepted transcription-regulatory annotations.
Reason: ESA1 affects transcription through histone acetylation and chromatin modification, not as a core transcriptional component. The specific accepted GO:0006357 Pol II transcription-regulation rows capture this function more informatively than the generic GO:0006351 parent.
Supporting Evidence:
PMID:24843044
The NuA4 histone acetyltransferase complex is required for gene regulation, cell cycle progression, and DNA repair.
GO:0006355 regulation of DNA-templated transcription
IEA
GO_REF:0000002
ACCEPT
Summary: ESA1 regulates transcription initiation and maintenance through chromatin acetylation. InterPro-based inference is appropriate for this regulatory role.
Reason: This annotation correctly distinguishes ESA1's regulatory role from core transcription machinery. IEA from InterPro domain analysis is appropriate.
GO:0006357 regulation of transcription by RNA polymerase II
IBA
GO_REF:0000033
ACCEPT
Summary: ESA1-containing NuA4 complex is recruited to Pol II genes and regulates transcription. IBA annotation captures this core biological function through phylogenetic inference.
Reason: Extensive literature demonstrates NuA4 recruitment to Pol II-transcribed genes, acetylation of promoter and coding region nucleosomes, and requirement for normal transcription initiation and elongation. This is a well-established and essential function. IBA evidence reflects phylogenetic conservation across eukaryotes.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN004172926 · MYST/KAT acetyltransferase ancestral node SUPPORTS TRANSFER
The current PTHR10615 broad MYST/KAT node supports conserved Pol II transcriptional regulation, a core consequence of Esa1/NuA4 histone acetylation.
GO:0006357 regulation of transcription by RNA polymerase II
IEA
GO_REF:0000117
ACCEPT
Summary: ARBA machine learning inference (IEA) independently confirms Pol II transcription regulation function. Duplicate annotation with IBA provides computational confirmation.
Reason: Both IBA and IEA converge on this annotation, providing confidence. IEA from ARBA model is appropriate.
GO:0006357 regulation of transcription by RNA polymerase II
IMP
PMID:11036083
The yeast NuA4 and Drosophila MSL complexes contain homologo...
ACCEPT
Summary: Mutational analysis (IMP) documents that esa1 is required for Pol II transcription regulation. This is strong experimental support for transcription function.
Reason: PMID:11036083 demonstrates through functional analysis that NuA4/ESA1 is required for transcription regulation. Multiple evidence codes strengthen this essential annotation.
Supporting Evidence:
PMID:11036083
The EAF3 deletion and the ESA1 mutation lead to a decrease in PHO5 gene expression; the EAF3 deletion also significantly reduces HIS4 and TRP4 expressions.
GO:0006354 DNA-templated transcription elongation
IDA
PMID:15949446
Dynamic lysine methylation on histone H3 defines the regulat...
ACCEPT
Summary: Direct experimental evidence (IDA) documents ESA1 involvement in transcription elongation through interplay with H3 methylation marks.
Reason: PMID:15949446 documents dynamic lysine acetylation patterns during transcription elongation. This is a specific and important ESA1 function distinct from initiation.
Supporting Evidence:
PMID:15949446
are required for transient NuA4-dependent H4K8ac. This releases RNAPII from Isw1 control and promotes controlled transcription elongation and termination.
GO:0006354 DNA-templated transcription elongation
IMP
PMID:15949446
Dynamic lysine methylation on histone H3 defines the regulat...
ACCEPT
Summary: Mutational/functional analysis (IMP) documents ESA1 is required for transcription elongation as distinct from initiation.
Reason: IMP evidence strengthens this specific annotation. Multiple evidence codes document elongation-specific function.
Supporting Evidence:
PMID:15949446
are required for transient NuA4-dependent H4K8ac. This releases RNAPII from Isw1 control and promotes controlled transcription elongation and termination.
GO:0032968 positive regulation of transcription elongation by RNA polymerase II
IMP
PMID:19822662
NuA4 lysine acetyltransferase Esa1 is targeted to coding reg...
ACCEPT
Summary: ESA1 positively stimulates transcription elongation through H4 acetylation. IMP evidence is strong and specific.
Reason: PMID:19822662 is explicit: 'NuA4 lysine acetyltransferase Esa1 is targeted to coding regions and stimulates transcription elongation with Gcn5.' This is more specific and informative than generic transcription regulation.
Supporting Evidence:
PMID:19822662
The NuA4 KAT, Esa1, mediates increased H4 acetylation and enhanced RSC occupancy and histone eviction in coding sequences and stimulates the rate of transcription elongation.
GO:0032968 positive regulation of transcription elongation by RNA polymerase II
IGI
PMID:19822662
NuA4 lysine acetyltransferase Esa1 is targeted to coding reg...
ACCEPT
Summary: Genetic interaction evidence (IGI) provides additional functional confirmation of ESA1's elongation stimulation role.
Reason: IGI from same paper as IMP documents genetic evidence for elongation function.
Supporting Evidence:
PMID:19822662
The NuA4 KAT, Esa1, mediates increased H4 acetylation and enhanced RSC occupancy and histone eviction in coding sequences and stimulates the rate of transcription elongation.
GO:0010629 negative regulation of gene expression
IEA
GO_REF:0000117
KEEP AS NON CORE
Summary: Esa1 participates in rDNA and telomeric silencing, but this ARBA negative-regulation parent is secondary beside the specific rDNA heterochromatin rows and Esa1's dominant positive transcriptional roles.
Reason: PMID:16436512 directly implicates Esa1 in silencing Pol II-transcribed genes at telomeres and within rDNA. rDNA heterochromatin formation is a descendant of negative regulation of gene expression, so the electronic parent is biologically consistent but secondary to Esa1's core H4-acetyltransferase role and its activating Pol II transcription-regulation functions.
Supporting Evidence:
PMID:16436512
Here we report that Esa1p also plays a key role in silencing RNA polymerase II (Pol II)-transcribed genes at telomeres and within the ribosomal DNA (rDNA)
GO:0035267 NuA4 histone acetyltransferase complex
IEA
GO_REF:0000117
ACCEPT
Summary: ESA1 is the catalytic subunit and core component of the NuA4 complex. ARBA inference appropriately identifies complex membership.
Reason: ESA1 is essential for NuA4 assembly and catalysis - it is the catalytic heart of the complex. This is a fundamental annotation.
GO:0035267 NuA4 histone acetyltransferase complex
IDA
PMID:15485911
The Yaf9 component of the SWR1 and NuA4 complexes is require...
ACCEPT
Summary: IDA evidence from Yaf9 paper documents ESA1 as core NuA4 component. Multiple evidence codes strengthen complex membership annotation.
Reason: PMID:15485911 'The Yaf9 component of the SWR1 and NuA4 complexes is required for proper gene expression' confirms ESA1 as NuA4 component through protein interaction and functional analysis.
Supporting Evidence:
PMID:15485911
We verify that Yaf9 is a stable component of NuA4, an essential histone H4 acetyltransferase complex.
GO:0035267 NuA4 histone acetyltransferase complex
IDA
PMID:10911987
Multiple links between the NuA4 histone acetyltransferase co...
ACCEPT
Summary: IDA evidence from foundational NuA4 characterization paper documents ESA1 as core complex component.
Reason: PMID:10911987 is a landmark paper establishing NuA4 complex composition including ESA1. Provides comprehensive evidence for complex membership.
Supporting Evidence:
PMID:10911987
These data along with the known epigenetic roles of Act3/Arp4 and homologs of Epl1 and Esa1 strongly support an essential role for chromatin structure modification by NuA4 in transcription regulation in vivo.
GO:0032777 piccolo histone acetyltransferase complex
IDA
PMID:12782659
Yeast enhancer of polycomb defines global Esa1-dependent ace...
ACCEPT
Summary: ESA1 is also a component of the Piccolo-NuA4 complex variant. IDA evidence documents this complex variant membership.
Reason: PMID:12782659 'Yeast enhancer of polycomb defines global Esa1-dependent acetylation of chromatin' identifies the Epl1-containing Piccolo NuA4 as a NuA4 variant. ESA1 serves as catalytic subunit in both NuA4 and Piccolo NuA4 complexes.
Supporting Evidence:
PMID:12782659
The picNuA4 complex contains Esa1, Epl1, and Yng2 as subunits and strongly prefers chromatin over free histones as substrate.
GO:0033554 cellular response to stress
IEA
GO_REF:0000117
KEEP AS NON CORE
Summary: ESA1 participates in DNA damage response (a cellular stress response). Annotation is correct but overly generic.
Reason: While technically accurate (DNA damage response is a stress response), this annotation is too broad and is subsumed by more specific annotations (GO:0006974 DNA damage response, GO:0006281 DNA repair). Prefer specific stress response annotations rather than the generic cellular response to stress.
GO:0010867 positive regulation of triglyceride biosynthetic process
IDA
PMID:29765047
Tip60-mediated lipin 1 acetylation and ER translocation dete...
KEEP AS NON CORE
Summary: ESA1 acetylates PAH1 (lipin), promoting ER translocation and fatty acid synthesis. IDA evidence documents this secondary metabolic function.
Reason: PMID:29765047 documents conserved NuA4/Tip60 regulation of lipin/Pah1-family lipid metabolism, and the yeast NuA4-Pah1 relationship was extended in PMID:38961766. This is a documented secondary function; ESA1's primary roles are chromatin/epigenetics and DNA repair, not lipid metabolism. Mark as non-core.
Supporting Evidence:
PMID:38961766
Two NuA4-dependent acetylation sites have been identified on Pah1, and lysine to arginine mutations at these two sites, in tandem, resulted in a reduction in lipid droplet formation.
PMID:38961766
Mutation of a NuA4-dependent acetylation site on Pah1 also resulted in aberrant Pah1 localization and defects in nuclear morphology and NVJ.
GO:0016239 positive regulation of macroautophagy
IMP
PMID:22539722
Function and molecular mechanism of acetylation in autophagy...
KEEP AS NON CORE
Summary: ESA1 positively regulates autophagy through acetylation of ATG3. IMP evidence documents this emerging function.
Reason: PMID:22539722 'Function and molecular mechanism of acetylation in autophagy regulation' demonstrates ESA1-mediated acetylation of ATG3 K19/K48 controls autophagy. Mechanistically sound but not a primary ESA1 function. Mark as non-core.
Supporting Evidence:
PMID:22539722
We used genetic analysis of Saccharomyces cerevisiae to identify Esa1 as a histone acetyltransferase required for autophagy.
GO:0008270 zinc ion binding
RCA
PMID:30358795
The cellular economy of the Saccharomyces cerevisiae zinc pr...
KEEP AS NON CORE
Summary: ESA1 contains a C2HC MYST-type zinc finger that coordinates zinc as a structural element of the catalytic domain.
Reason: UniProt confirms the degenerate C2HC MYST zinc finger at residues 195..220, and PMID:30358795 identifies this feature in a yeast zinc-proteome survey. Zinc coordination is a structural contribution to the catalytic domain rather than a separate core molecular function.
Supporting Evidence:
file:yeast/ESA1/ESA1-uniprot.txt
FT ZN_FING 195..220 FT /note="C2HC MYST-type; degenerate" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01063"
GO:0051726 regulation of cell cycle
IMP
PMID:10082517
Esa1p is an essential histone acetyltransferase required for...
ACCEPT
Summary: ESA1 is essential for cell cycle progression, particularly through the mitosis/cytokinesis checkpoint. IMP evidence is strong.
Reason: PMID:10082517 'Esa1p is an essential histone acetyltransferase required for cell cycle progression' demonstrates through temperature-sensitive mutant analysis that esa1 is required for mitosis. Temperature-sensitive esa1 mutants complete DNA replication but block at mitosis/cytokinesis.
Supporting Evidence:
PMID:10082517
Strains carrying these mutations are also blocked in the cell cycle such that at restrictive temperatures, esa1 mutants succeed in replicating their DNA but fail to proceed normally through mitosis and cytokinesis.
GO:0000183 rDNA heterochromatin formation
IMP
PMID:16436512
Distinct roles for the essential MYST family HAT Esa1p in tr...
KEEP AS NON CORE
Summary: ESA1 has documented but mechanistically unclear roles in rDNA silencing. This appears paradoxical given ESA1's primary role as a transcriptional activator.
Reason: PMID:16436512 'Distinct roles for the essential MYST family HAT Esa1p in transcriptional silencing' demonstrates ESA1 involvement in rDNA heterochromatin. However: (1) Mechanistically counterintuitive - how does H4 acetylation (typically euchromatin mark) promote heterochromatin formation? (2) The paper title emphasizes 'distinct roles' suggesting indirect or complex mechanism; (3) ESA1's primary documented function is transcriptional activation, not silencing. Mark as non-core.
Supporting Evidence:
PMID:16436512
Here we report that Esa1p also plays a key role in silencing RNA polymerase II (Pol II)-transcribed genes at telomeres and within the ribosomal DNA (rDNA) of the nucleolus.
GO:0000183 rDNA heterochromatin formation
IGI
PMID:16436512
Distinct roles for the essential MYST family HAT Esa1p in tr...
KEEP AS NON CORE
Summary: Genetic interaction evidence (IGI) from same paper as IMP documents functional relationship with rDNA silencing machinery.
Reason: IGI provides additional evidence for rDNA silencing involvement, but same mechanistic concerns apply. Multiple evidence codes strengthen annotation but don't resolve mechanism.
Supporting Evidence:
PMID:16436512
Here we report that Esa1p also plays a key role in silencing RNA polymerase II (Pol II)-transcribed genes at telomeres and within the ribosomal DNA (rDNA) of the nucleolus.
GO:0005515 protein binding
IPI
PMID:10487762
NuA4, an essential transcription adaptor/histone H4 acetyltr...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P38811.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:10911987
Multiple links between the NuA4 histone acetyltransferase co...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P80428.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:11036083
The yeast NuA4 and Drosophila MSL complexes contain homologo...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:Q12432.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:12672825
Opposite role of yeast ING family members in p53-dependent t...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and an older IntAct partner.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:15045029
A protein complex containing the conserved Swi2/Snf2-related...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P38811.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:15353583
Regulation of chromosome stability by the histone H2A varian...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:Q12432.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:15485911
The Yaf9 component of the SWR1 and NuA4 complexes is require...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P38811.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:16429126
Proteome survey reveals modularity of the yeast cell machine...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P38811.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:16554755
Global landscape of protein complexes in the yeast Saccharom...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and an older IntAct partner.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:20489023
A global protein kinase and phosphatase interaction network ...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P38811.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:21179020
Defining the budding yeast chromatin-associated interactome.
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P02309.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:21183953
Gcn4p-mediated transcriptional repression of ribosomal prote...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P11938.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:21984211
Structure and nucleosome interaction of the yeast NuA4 and P...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and an older IntAct partner.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:22020126
MYST protein acetyltransferase activity requires active site...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P02309.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:24843044
Eaf5/7/3 form a functionally independent NuA4 submodule link...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P80428.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:37968396
The social and structural architecture of the yeast protein ...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P38811.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0000786 nucleosome
IDA
PMID:21984211
Structure and nucleosome interaction of the yeast NuA4 and P...
MODIFY
Summary: ComplexPortal-derived nucleosome component assertion for Esa1.
Reason: PMID:21984211 established the structure and nucleosome interaction of NuA4 and Piccolo NuA4, and PMID:40100634 directly resolved Piccolo NuA4 bound to nucleosomes. A molecular-function replacement, nucleosome binding, matches those assays and avoids asserting that Esa1 is part of the histone-DNA nucleosome particle itself.
Proposed replacements: nucleosome binding
Supporting Evidence:
PMID:21984211
EM analysis of a NuA4-NCP complex shows the NCP bound at the periphery of NuA4.
PMID:40100634
Here, using cryoelectron microscopy (cryo-EM) single particle analysis, we present seven cryo-EM structures of piccolo NuA4 (pNuA4) in complex with wild-type H2A.Z or H2A.Z-mutant-containing nucleosomes in the absence or presence of acetyl coenzyme A (Ac-CoA).
GO:0004402 histone acetyltransferase activity
EXP
PMID:12368900
The catalytic mechanism of the ESA1 histone acetyltransferas...
ACCEPT
Summary: Direct experimental support for Esa1 histone acetyltransferase activity.
Reason: Esa1 acetylates multiple histone substrates through NuA4 and Piccolo NuA4, including H4, H3, H2B, H2A, and H2A.Z, so the parent histone acetyltransferase molecular-function assertion remains correct in addition to the H4-specific rows. UniProt's curated function block summarizes the specific H4K5/8/12/16, H3K14, H2BK16, H2AK4/7, and H2A.ZK14 sites.
Supporting Evidence:
PMID:12368900
Yeast ESA1 is a member of the MYST subfamily of histone acetyltransferases
GO:0004402 histone acetyltransferase activity
EXP
PMID:17223684
Catalytic mechanism of a MYST family histone acetyltransfera...
ACCEPT
Summary: Direct experimental support for Esa1 histone acetyltransferase activity.
Reason: Esa1 acetylates multiple histone substrates through NuA4 and Piccolo NuA4, including H4, H3, H2B, H2A, and H2A.Z, so the parent histone acetyltransferase molecular-function assertion remains correct in addition to the H4-specific rows. UniProt's curated function block summarizes the specific H4K5/8/12/16, H3K14, H2BK16, H2AK4/7, and H2A.ZK14 sites.
Supporting Evidence:
PMID:17223684
Together, the results suggest that MYST family HATs utilize a direct-attack mechanism within an Esa1 x acetyl-CoA x histone ternary complex.
GO:0004402 histone acetyltransferase activity
EXP
PMID:18245364
Catalytic-site mutations in the MYST family histone Acetyltr...
ACCEPT
Summary: Direct experimental support for Esa1 histone acetyltransferase activity.
Reason: Esa1 acetylates multiple histone substrates through NuA4 and Piccolo NuA4, including H4, H3, H2B, H2A, and H2A.Z, so the parent histone acetyltransferase molecular-function assertion remains correct in addition to the H4-specific rows. UniProt's curated function block summarizes the specific H4K5/8/12/16, H3K14, H2BK16, H2AK4/7, and H2A.ZK14 sites.
Supporting Evidence:
PMID:18245364
Esa1 is the only essential histone acetyltransferase (HAT) in budding yeast.
GO:0004402 histone acetyltransferase activity
EXP
PMID:22020126
MYST protein acetyltransferase activity requires active site...
ACCEPT
Summary: Direct experimental support for Esa1 histone acetyltransferase activity.
Reason: Esa1 acetylates multiple histone substrates through NuA4 and Piccolo NuA4, including H4, H3, H2B, H2A, and H2A.Z, so the parent histone acetyltransferase molecular-function assertion remains correct in addition to the H4-specific rows. UniProt's curated function block summarizes the specific H4K5/8/12/16, H3K14, H2BK16, H2AK4/7, and H2A.ZK14 sites.
Supporting Evidence:
PMID:22020126
we present mass spectrometry data and biochemical experiments to demonstrate that this lysine autoacetylation on yEsa1, hMOF and its yeast orthologue, ySas2 (KAT8) occurs in solution and is required for acetylation and protein substrate binding in vitro
GO:0004402 histone acetyltransferase activity
EXP
PMID:9520405
ESA1 is a histone acetyltransferase that is essential for gr...
ACCEPT
Summary: Direct experimental support for Esa1 histone acetyltransferase activity.
Reason: Esa1 acetylates multiple histone substrates through NuA4 and Piccolo NuA4, including H4, H3, H2B, H2A, and H2A.Z, so the parent histone acetyltransferase molecular-function assertion remains correct in addition to the H4-specific rows. UniProt's curated function block summarizes the specific H4K5/8/12/16, H3K14, H2BK16, H2AK4/7, and H2A.ZK14 sites.
Supporting Evidence:
PMID:9520405
we express a yeast ORF with homology to MYST family members and show it possesses histone acetyltransferase activity
GO:0005515 protein binding
IPI
PMID:15485911
The Yaf9 component of the SWR1 and NuA4 complexes is require...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P80428.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:15485911
The Yaf9 component of the SWR1 and NuA4 complexes is require...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:Q12432.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:16429126
Proteome survey reveals modularity of the yeast cell machine...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P80428.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:16429126
Proteome survey reveals modularity of the yeast cell machine...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:Q12432.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:21179020
Defining the budding yeast chromatin-associated interactome.
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P38811.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:21179020
Defining the budding yeast chromatin-associated interactome.
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P80428.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:21179020
Defining the budding yeast chromatin-associated interactome.
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:Q12432.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:24843044
Eaf5/7/3 form a functionally independent NuA4 submodule link...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:Q12432.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:37968396
The social and structural architecture of the yeast protein ...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:P80428.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0005515 protein binding
IPI
PMID:37968396
The social and structural architecture of the yeast protein ...
REMOVE
Summary: Generic IntAct protein-binding evidence for ESA1 and UniProtKB:Q12432.
Reason: The reported interaction may be real, but GO:0005515 is a generic binding term that does not add a molecular function for ESA1. ESA1's informative activities and complex memberships are captured by the NuA4/Piccolo component rows and acetyltransferase rows, and this IPI row does not by itself support a more specific replacement molecular function.
GO:0006974 DNA damage response
IEA
GO_REF:0000117
ACCEPT
Summary: ARBA electronic assertion of the DNA-damage response role.
Reason: DNA double-strand break repair and damage response are established Esa1/NuA4 functions supported by multiple direct SGD DNA-repair rows, so this broad electronic DNA-damage response row is biologically consistent.
GO:0010485 histone H4 acetyltransferase activity
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic transfer of histone H4 acetyltransferase activity from the fungal Esa1/NuA4 clade.
Reason: Histone H4 acetyltransferase activity is the most specific core molecular function for yeast Esa1. The current PTHR10615 PTN000834946 IBD node is a safe fungal transfer and includes direct ESA1 evidence among its seeds.
Propagation Review
Root cause: NO FAILURE CORE
Sources checked:
PANTHER:PTN000834946 · fungal Esa1/NuA4 H4 acetyltransferase node SUPPORTS TRANSFER
The current PTHR10615 fungal Esa1/NuA4 node supports histone H4 acetyltransferase activity and includes direct yeast ESA1 evidence as one of its seeds, which is expected rather than circular.
GO:0032777 piccolo histone acetyltransferase complex
IPI
PMID:21984211
Structure and nucleosome interaction of the yeast NuA4 and P...
ACCEPT
Summary: ComplexPortal/Piccolo evidence that Esa1 is part of the Piccolo NuA4 HAT complex.
Reason: Esa1 is the catalytic subunit of Piccolo NuA4, so this complex-membership row is core and correct.
Supporting Evidence:
PMID:21984211
Three NuA4 subunits (Esa1, Yng2, and Epl1) are responsible for NuA4's HAT activity, and they comprise the Piccolo-NuA4 (Piccolo) catalytic subcomplex
GO:0035267 NuA4 histone acetyltransferase complex
IPI
PMID:24843044
Eaf5/7/3 form a functionally independent NuA4 submodule link...
ACCEPT
Summary: ComplexPortal evidence that Esa1 is part of the NuA4 HAT complex.
Reason: Esa1 is the catalytic subunit of the NuA4 histone acetyltransferase complex, so this complex-membership row is core and correct.
Supporting Evidence:
PMID:38961766
NuA4 is comprised of 13 subunits, including the catalytic component, Esa1, and the scaffolding unit, Eaf1.
PMID:24843044
The NuA4 histone acetyltransferase complex is required for gene regulation, cell cycle progression, and DNA repair.
GO:0061733 protein-lysine-acetyltransferase activity
EXP
PMID:22539722
Function and molecular mechanism of acetylation in autophagy...
ACCEPT
Summary: Experimental UniProt assertion of Esa1 protein-lysine acetyltransferase activity.
Reason: GO:0061733 is broader than the histone-specific terms and covers documented non-histone substrates such as Atg3; it is an appropriate general catalytic row for Esa1.
Supporting Evidence:
PMID:22539722
We further identified the autophagy signaling component Atg3 as a substrate for Esa1.
GO:0106226 peptide 2-hydroxyisobutyryltransferase activity
ISS
GO_REF:0000024
UNDECIDED
Summary: Sequence-similarity transfer of peptide 2-hydroxyisobutyryltransferase activity from fission yeast Mst1.
Reason: This row is transferred from Schizosaccharomyces pombe Mst1 and no direct S. cerevisiae Esa1 2-hydroxyisobutyryltransferase evidence is cited in the current GOA row. Keep unresolved until the source-side evidence and transfer to budding yeast Esa1 are reviewed.
GO:0140064 peptide crotonyltransferase activity
EXP
PMID:31699900
Gcn5 and Esa1 function as histone crotonyltransferases to re...
ACCEPT
Summary: Experimental UniProt assertion of Esa1 peptide crotonyltransferase activity.
Reason: This is the broad Rhea-level crotonyltransferase activity corresponding to the direct histone crotonyltransferase evidence from Fellows et al.
Supporting Evidence:
PMID:31699900
The Piccolo NuA4 complex, similar to the ADA complex, also exhibited crotonyltransferase activity toward nucleosomes in a manner dependent on its catalytic activity

Core Functions

Catalytic component of the NuA4 histone acetyltransferase complex that catalyzes acetylation of histone H4 (K5, K8, K12, K16), H3 (K14), H2B (K16), H2A (K4, K7), and histone variant H2A.Z (K14). ESA1 is essential for transcriptional activation of growth genes, double-strand break repair, cell cycle progression through S and G2/M phases, and chromatin organization. Functions through dynamic localization and recruitment to target genes via protein-protein interactions within the NuA4 complex.

Supporting Evidence:
  • file:yeast/ESA1/ESA1-uniprot.txt
    CC Acetylates histone H4 to form H4K5ac, H4K8ac, H4K12ac and H4K16ac, CC histone H3 to form H3K14ac, histone H2B to form H2BK16ac, histone H2A CC to form H2AK4ac and H2AK7ac, and histone variant H2A.Z to form CC H2A.ZK14ac (PubMed:10082517, PubMed:10835360, PubMed:10911987,
  • PMID:12353039
    Both pathways require the ESA1 histone acetyl transferase (HAT), which is responsible for acetylating all H4 tail lysines

Catalytic component of Piccolo NuA4 that can transfer crotonyl groups from crotonyl-CoA to nucleosomal histones, supporting crotonylation-dependent transcriptional regulation.

Supporting Evidence:
  • PMID:31699900
    The Piccolo NuA4 complex, similar to the ADA complex, also exhibited crotonyltransferase activity toward nucleosomes in a manner dependent on its catalytic activity
  • PMID:31699900
    crotonate-induced histone crotonylation was also reduced in the rapamycin-treated Esa1-N-FRB strain

References

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Suggested Questions for Experts

Q: How does H4 acetylation by ESA1 promote chromatin accessibility at DSBs while ESA1 also promotes rDNA heterochromatin formation? What is the mechanistic basis for these apparently paradoxical 'distinct roles'?

Q: Is H3K56 acetylation during DNA replication a function of ESA1 or is this restricted to Gcn5? Current annotations do not explicitly capture S-phase-specific acetyltransferase activity.

Q: What is the biological significance of ESA1's 2-hydroxyisobutyrylation capability? Is this an in vitro artifact or a documented in vivo modification in yeast?

Q: Are there documented cases where ESA1/NuA4 acts as a net repressor of transcription beyond the complex rDNA silencing mechanisms?

Q: How is ESA1 catalytic activity regulated in different cell cycle phases? Is there phosphorylation-dependent regulation as suggested by PMID:16135807?

Q: What is the relationship between ESA1-catalyzed histone acetylation and ESA1-catalyzed histone crotonylation? Do these occur on the same nucleosomes or mark different genes?

Suggested Experiments

Experiment: Chromatin immunoprecipitation (ChIP) of ESA1 across the genome combined with H3K14ac, H2BK16ac, H2AK4/7ac, H2A.ZK14ac, and H4K5/8/12/16ac marks to map site-specific acetylation patterns

Experiment: Quantitative mass spectrometry analysis of ESA1 substrate specificity and stoichiometry for histone and non-histone substrates in vivo

Experiment: Conditional degron/degradation studies of ESA1 to assess immediate vs. indirect effects on transcription, DNA repair, and autophagy

Experiment: Biochemical reconstitution of NuA4 complex with recombinant ESA1 mutants to define structure-function relationships for catalysis, substrate recognition, and complex assembly

Experiment: Metabolomics analysis of esa1 mutants vs. wildtype to assess changes in fatty acid synthesis, autophagy flux, and cellular energy metabolism

Experiment: Detailed analysis of ESA1 posttranslational modifications (phosphorylation, autoacetylation) and their functional consequences

Experiment: Comparison of crotonylation vs. acetylation marks by ESA1 on the same substrates using mass spectrometry and ChIP-seq

Deep Research

Falcon

(ESA1-deep-research-falcon.md)

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SGD

(ESA1-deep-research-sgd.md)
SGD gene description for ESA1 (yeast) SGD

SGD gene description for ESA1 (yeast)

Catalytic subunit of the histone acetyltransferase complex (NuA4); acetylates four conserved internal lysines of histone H4 N-terminal tail and can acetylate histone H2A; master regulator of cellular acetylation balance; required for cell cycle progression and transcriptional silencing at the rDNA locus and regulation of autophagy; human ortholog TIP60/KAT5 is implicated in cancer and other diseases, functionally complements lethality of the esa1 null mutation

📚 Additional Documentation

Notes

(ESA1-notes.md)

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Curation Analysis

(ESA1-CURATION-ANALYSIS.md)

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Curation Complete

(ESA1-CURATION-COMPLETE.md)

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Curation Summary

(ESA1-CURATION-SUMMARY.md)

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Files Index

(FILES-INDEX.md)

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Readme Curation

(README-CURATION.md)

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📄 View Raw YAML

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