HAC1

UniProt ID: P41546
Organism: Saccharomyces cerevisiae S288C
Review Status: COMPLETE
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Gene Description

HAC1 encodes the basic-leucine zipper (bZIP) transcription factor that executes the transcriptional arm of the unfolded protein response (UPR) in Saccharomyces cerevisiae. HAC1 mRNA is constitutively transcribed but translationally silenced by base pairing between its intron and 5' UTR; upon accumulation of unfolded proteins in the endoplasmic reticulum, the ER-membrane kinase/endoribonuclease Ire1 excises the intron and tRNA ligase Trl1 joins the exons, allowing synthesis of the active Hac1i protein. Hac1i is a nuclear protein that binds the UPR element (UPRE, core CAGCGTG) in the promoters of genes encoding ER chaperones, folding enzymes, ER-associated degradation components and secretory pathway and lipid-synthesis proteins (e.g. KAR2, PDI1, EUG1, FKB2), activating their transcription. The spliced C-terminal tail stabilizes the otherwise rapidly degraded protein. Hac1i also acts as a repressor of early meiotic genes through association with the Rpd3-Sin3 histone deacetylase, linking ER stress to inhibition of meiosis and other nitrogen-starvation differentiation programs. Hac1 is the functional counterpart of metazoan XBP1. Basal Hac1-dependent UPR activity is also needed in unstressed cells: hac1 and ire1 mutants grow poorly and repeatedly acquire adaptive aneuploidies that counteract ER folding stress, which re-supplying Hac1 or a UPR-independent ER chaperone prevents.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0000122 negative regulation of transcription by RNA polymerase II
IDA
PMID:15141165
The unfolded protein response represses differentiation thro...
KEEP AS NON CORE
Summary: Hac1i (the spliced, translated isoform) represses early meiotic genes by associating with the Rpd3-Sin3 histone deacetylase recruited by Ume6p (PMID:15141165).
Reason: The repression of early meiotic genes by Hac1i is supported by IDA/IMP evidence and reflects a genuine regulatory output, but it is a secondary role relative to the core activator function of Hac1 in the UPR.
Supporting Evidence:
PMID:15141165
These data also define for the first time a gene class that is under negative control by the UPR, and provide the framework for a novel mechanism through which bZIP proteins repress transcription.
PMID:15141165
Co-immunoprecipitation experiments demonstrated that Hac1ip can interact with the HDAC in vivo.
GO:0000122 negative regulation of transcription by RNA polymerase II
IMP
PMID:15141165
The unfolded protein response represses differentiation thro...
KEEP AS NON CORE
Summary: Hac1i (the spliced, translated isoform) represses early meiotic genes by associating with the Rpd3-Sin3 histone deacetylase recruited by Ume6p (PMID:15141165).
Reason: The repression of early meiotic genes by Hac1i is supported by IDA/IMP evidence and reflects a genuine regulatory output, but it is a secondary role relative to the core activator function of Hac1 in the UPR.
Supporting Evidence:
PMID:15141165
These data also define for the first time a gene class that is under negative control by the UPR, and provide the framework for a novel mechanism through which bZIP proteins repress transcription.
PMID:15141165
Co-immunoprecipitation experiments demonstrated that Hac1ip can interact with the HDAC in vivo.
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
IDA
PMID:15141165
The unfolded protein response represses differentiation thro...
ACCEPT
Summary: Hac1 is a bZIP DNA-binding transcription factor acting on RNA polymerase II promoters; this paper shows Hac1i-dependent regulation of early meiotic gene promoters.
Reason: Hac1 is the bZIP transcription factor of the yeast UPR; the Pol II-specific DNA-binding TF activity term is the correct core MF. This paper adds a repressive output at Ume6-regulated promoters.
Supporting Evidence:
PMID:15141165
These data also define for the first time a gene class that is under negative control by the UPR, and provide the framework for a novel mechanism through which bZIP proteins repress transcription.
file:yeast/HAC1/HAC1-uniprot.txt
Transcriptional activator involved in the unfolded protein response (UPR) pathway. Recognizes and binds to the UPR element (UPRE) in the promoter of UPR-regulated genes such as KAR2, PDI1, EUG1 and FKB2.
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
IDA
PMID:9077435
Signalling from endoplasmic reticulum to nucleus: transcript...
ACCEPT
Summary: Hac1 is a bZIP transcription factor that binds the UPRE (CAGCGTG) in promoters of ER chaperone genes and activates their transcription.
Reason: Core molecular function: Hac1 binds UPRE elements in vitro and activates transcription in vivo, and cells lacking it cannot induce UPR target genes (PMID:9077435, PMID:8898193).
Supporting Evidence:
PMID:9077435
The ERN4 gene encodes a basic-leucine zipper protein (Ern4p) that specifically binds to UPRE in vitro and activates transcription in vivo.
PMID:9077435
Cells lacking Ern4p are unable to induce transcription of any of the five target genes tested and exhibit sensitivity to ER stress and inositol requirement for growth.
PMID:8898193
We have identified a basic-leucine zipper transcription factor, Hac1p, that is required for the UPR and binds to the UPR element in the promoter of UPR-regulated genes.
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
IEA
GO_REF:0000002
ACCEPT
Summary: Hac1 is a bZIP transcription factor that binds the UPRE (CAGCGTG) in promoters of ER chaperone genes and activates their transcription.
Reason: Core molecular function: Hac1 binds UPRE elements in vitro and activates transcription in vivo, and cells lacking it cannot induce UPR target genes (PMID:9077435, PMID:8898193).
Supporting Evidence:
file:yeast/HAC1/HAC1-uniprot.txt
Transcriptional activator involved in the unfolded protein response (UPR) pathway. Recognizes and binds to the UPR element (UPRE) in the promoter of UPR-regulated genes such as KAR2, PDI1, EUG1 and FKB2.
PMID:8898193
We have identified a basic-leucine zipper transcription factor, Hac1p, that is required for the UPR and binds to the UPR element in the promoter of UPR-regulated genes.
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
IMP
PMID:15141165
The unfolded protein response represses differentiation thro...
ACCEPT
Summary: Hac1 is a bZIP DNA-binding transcription factor acting on RNA polymerase II promoters; this paper shows Hac1i-dependent regulation of early meiotic gene promoters.
Reason: Hac1 is the bZIP transcription factor of the yeast UPR; the Pol II-specific DNA-binding TF activity term is the correct core MF. This paper adds a repressive output at Ume6-regulated promoters.
Supporting Evidence:
PMID:15141165
These data also define for the first time a gene class that is under negative control by the UPR, and provide the framework for a novel mechanism through which bZIP proteins repress transcription.
file:yeast/HAC1/HAC1-uniprot.txt
Transcriptional activator involved in the unfolded protein response (UPR) pathway. Recognizes and binds to the UPR element (UPRE) in the promoter of UPR-regulated genes such as KAR2, PDI1, EUG1 and FKB2.
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
IMP
PMID:9077435
Signalling from endoplasmic reticulum to nucleus: transcript...
ACCEPT
Summary: Hac1 is a bZIP transcription factor that binds the UPRE (CAGCGTG) in promoters of ER chaperone genes and activates their transcription.
Reason: Core molecular function: Hac1 binds UPRE elements in vitro and activates transcription in vivo, and cells lacking it cannot induce UPR target genes (PMID:9077435, PMID:8898193).
Supporting Evidence:
PMID:9077435
The ERN4 gene encodes a basic-leucine zipper protein (Ern4p) that specifically binds to UPRE in vitro and activates transcription in vivo.
PMID:9077435
Cells lacking Ern4p are unable to induce transcription of any of the five target genes tested and exhibit sensitivity to ER stress and inositol requirement for growth.
PMID:8898193
We have identified a basic-leucine zipper transcription factor, Hac1p, that is required for the UPR and binds to the UPR element in the promoter of UPR-regulated genes.
GO:0003700 DNA-binding transcription factor activity
IEA
GO_REF:0000002
ACCEPT
Summary: Electronic InterPro-based assignment of DNA-binding transcription factor activity from the bZIP domain.
Reason: Correct but less specific parent of the experimentally supported Pol II-specific term; the bZIP domain mapping is sound.
Supporting Evidence:
PMID:9077435
The ERN4 gene encodes a basic-leucine zipper protein (Ern4p) that specifically binds to UPRE in vitro and activates transcription in vivo.
file:yeast/HAC1/HAC1-uniprot.txt
Transcriptional activator involved in the unfolded protein response (UPR) pathway. Recognizes and binds to the UPR element (UPRE) in the promoter of UPR-regulated genes such as KAR2, PDI1, EUG1 and FKB2.
GO:0005634 nucleus
IDA
PMID:8898193
A novel mechanism for regulating activity of a transcription...
ACCEPT
Summary: Hac1 is a nuclear transcription factor.
Reason: Nuclear localization is consistent with its function as a promoter-binding transcriptional activator of UPR target genes.
Supporting Evidence:
file:yeast/HAC1/HAC1-uniprot.txt
SUBCELLULAR LOCATION: Nucleus
PMID:8898193
We have identified a basic-leucine zipper transcription factor, Hac1p, that is required for the UPR and binds to the UPR element in the promoter of UPR-regulated genes.
GO:0005634 nucleus
IEA
GO_REF:0000044
ACCEPT
Summary: Hac1 is a nuclear transcription factor.
Reason: Nuclear localization is consistent with its function as a promoter-binding transcriptional activator of UPR target genes.
Supporting Evidence:
file:yeast/HAC1/HAC1-uniprot.txt
SUBCELLULAR LOCATION: Nucleus
PMID:8898193
We have identified a basic-leucine zipper transcription factor, Hac1p, that is required for the UPR and binds to the UPR element in the promoter of UPR-regulated genes.
GO:0006355 regulation of DNA-templated transcription
IEA
GO_REF:0000002
ACCEPT
Summary: Electronic assignment of regulation of DNA-templated transcription from the bZIP domain.
Reason: Correct general parent of the more specific experimentally supported transcriptional regulation terms.
Supporting Evidence:
PMID:9077435
The ERN4 gene encodes a basic-leucine zipper protein (Ern4p) that specifically binds to UPRE in vitro and activates transcription in vivo.
GO:0030968 endoplasmic reticulum unfolded protein response
IMP
PMID:16582425
Genomic analysis of the Opi- phenotype.
ACCEPT
Summary: hac1 mutants fail to induce UPRE-driven reporter expression in response to ER stress (tunicamycin) or inositol depletion; Hac1 is the transcriptional effector of the yeast UPR.
Reason: Hac1 is the sole transcription factor executing the transcriptional output of the yeast ER UPR downstream of Ire1; this is core biology.
Supporting Evidence:
PMID:16582425
Also as expected, the hac1 strain was defective in responding to inositol depletion and Tm addition
PMID:9077435
Cells lacking Ern4p are unable to induce transcription of any of the five target genes tested and exhibit sensitivity to ER stress and inositol requirement for growth.
GO:0030968 endoplasmic reticulum unfolded protein response
IMP
PMID:8898193
A novel mechanism for regulating activity of a transcription...
ACCEPT
Summary: hac1 mutants fail to induce UPRE-driven reporter expression in response to ER stress (tunicamycin) or inositol depletion; Hac1 is the transcriptional effector of the yeast UPR.
Reason: Hac1 is the sole transcription factor executing the transcriptional output of the yeast ER UPR downstream of Ire1; this is core biology.
Supporting Evidence:
PMID:8898193
We have identified a basic-leucine zipper transcription factor, Hac1p, that is required for the UPR and binds to the UPR element in the promoter of UPR-regulated genes.
PMID:8898193
Surprisingly, Hac1p is found in UPR-activated cells only, and its level is controlled by regulated splicing of its mRNA.
PMID:9077435
Cells lacking Ern4p are unable to induce transcription of any of the five target genes tested and exhibit sensitivity to ER stress and inositol requirement for growth.
GO:0034976 response to endoplasmic reticulum stress
IMP
PMID:26966233
Unfolded protein response regulates yeast small GTPase Arl1p...
ACCEPT
Summary: Constitutively active Hac1 restores Golgi localization of Arl1p and Imh1p in ire1-deleted cells, placing Hac1 in the Ire1-dependent response to ER stress (PMID:26966233).
Reason: Response to ER stress is a correct, if broad, parent of the ER UPR. Hac1 is the downstream transcription factor of this response.
Supporting Evidence:
PMID:26966233
Moreover, constitutively active transcription factor Hac1p restored the Golgi localization of Arl1p and Imh1p inIRE1-deleted cells.
GO:0045944 positive regulation of transcription by RNA polymerase II
IDA
PMID:9077435
Signalling from endoplasmic reticulum to nucleus: transcript...
ACCEPT
Summary: Hac1 activates transcription of UPRE-containing ER chaperone genes (e.g. KAR2, PDI1, EUG1, FKB2).
Reason: Direct transcriptional activation of UPR target genes is the core biological role of Hac1.
Supporting Evidence:
PMID:9077435
The ERN4 gene encodes a basic-leucine zipper protein (Ern4p) that specifically binds to UPRE in vitro and activates transcription in vivo.
PMID:9077435
Cells lacking Ern4p are unable to induce transcription of any of the five target genes tested and exhibit sensitivity to ER stress and inositol requirement for growth.
GO:0045944 positive regulation of transcription by RNA polymerase II
IEA
GO_REF:0000002
ACCEPT
Summary: Electronic assignment of positive regulation of Pol II transcription.
Reason: Hac1 is a transcriptional activator of Pol II-transcribed UPR target genes; consistent with experimental evidence.
Supporting Evidence:
file:yeast/HAC1/HAC1-uniprot.txt
Transcriptional activator involved in the unfolded protein response (UPR) pathway. Recognizes and binds to the UPR element (UPRE) in the promoter of UPR-regulated genes such as KAR2, PDI1, EUG1 and FKB2.
GO:0045944 positive regulation of transcription by RNA polymerase II
IMP
PMID:8898193
A novel mechanism for regulating activity of a transcription...
ACCEPT
Summary: Hac1 activates transcription of UPRE-containing ER chaperone genes (e.g. KAR2, PDI1, EUG1, FKB2).
Reason: Direct transcriptional activation of UPR target genes is the core biological role of Hac1.
Supporting Evidence:
PMID:8898193
We have identified a basic-leucine zipper transcription factor, Hac1p, that is required for the UPR and binds to the UPR element in the promoter of UPR-regulated genes.
GO:0045944 positive regulation of transcription by RNA polymerase II
IMP
PMID:9077435
Signalling from endoplasmic reticulum to nucleus: transcript...
ACCEPT
Summary: Hac1 activates transcription of UPRE-containing ER chaperone genes (e.g. KAR2, PDI1, EUG1, FKB2).
Reason: Direct transcriptional activation of UPR target genes is the core biological role of Hac1.
Supporting Evidence:
PMID:9077435
The ERN4 gene encodes a basic-leucine zipper protein (Ern4p) that specifically binds to UPRE in vitro and activates transcription in vivo.
PMID:9077435
Cells lacking Ern4p are unable to induce transcription of any of the five target genes tested and exhibit sensitivity to ER stress and inositol requirement for growth.
GO:0051321 meiotic cell cycle
IDA
PMID:15141165
The unfolded protein response represses differentiation thro...
MODIFY
Summary: Hac1i acts as a negative regulator of meiosis under nitrogen-rich conditions, repressing early meiotic genes via the Rpd3-Sin3 HDAC (PMID:15141165).
Reason: The evidence shows Hac1i negatively regulates meiosis rather than executing the meiotic cell cycle itself; the regulatory term is more accurate. This is a non-core role.
Supporting Evidence:
PMID:15141165
Spliced Hac1p (Hac1ip) is a negative regulator of differentiation responses to nitrogen starvation, pseudohyphal growth, and meiosis.
PMID:15141165
These data also define for the first time a gene class that is under negative control by the UPR, and provide the framework for a novel mechanism through which bZIP proteins repress transcription.
GO:0051321 meiotic cell cycle
IMP
PMID:15141165
The unfolded protein response represses differentiation thro...
MODIFY
Summary: Hac1i acts as a negative regulator of meiosis under nitrogen-rich conditions, repressing early meiotic genes via the Rpd3-Sin3 HDAC (PMID:15141165).
Reason: The evidence shows Hac1i negatively regulates meiosis rather than executing the meiotic cell cycle itself; the regulatory term is more accurate. This is a non-core role.
Supporting Evidence:
PMID:15141165
Spliced Hac1p (Hac1ip) is a negative regulator of differentiation responses to nitrogen starvation, pseudohyphal growth, and meiosis.
PMID:15141165
These data also define for the first time a gene class that is under negative control by the UPR, and provide the framework for a novel mechanism through which bZIP proteins repress transcription.

Core Functions

UPRE-binding bZIP transcriptional activator: the spliced Hac1i protein binds UPR elements in the promoters of ER chaperone and folding-enzyme genes and activates their RNA polymerase II transcription, executing the transcriptional output of the Ire1-mediated UPR.

Supporting Evidence:
  • PMID:9077435
    The ERN4 gene encodes a basic-leucine zipper protein (Ern4p) that specifically binds to UPRE in vitro and activates transcription in vivo.
  • PMID:8898193
    We have identified a basic-leucine zipper transcription factor, Hac1p, that is required for the UPR and binds to the UPR element in the promoter of UPR-regulated genes.
  • file:yeast/HAC1/HAC1-uniprot.txt
    Transcriptional activator involved in the unfolded protein response (UPR) pathway. Recognizes and binds to the UPR element (UPRE) in the promoter of UPR-regulated genes such as KAR2, PDI1, EUG1 and FKB2.

Hac1i represses early meiotic genes under nitrogen-rich conditions by associating with the Ume6-recruited Rpd3-Sin3 histone deacetylase, thereby restraining meiosis (secondary, non-UPR-target output).

Supporting Evidence:
  • PMID:15141165
    Spliced Hac1p (Hac1ip) is a negative regulator of differentiation responses to nitrogen starvation, pseudohyphal growth, and meiosis.
  • PMID:15141165
    Co-immunoprecipitation experiments demonstrated that Hac1ip can interact with the HDAC in vivo.

References

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Suggested Questions for Experts

Q: Does Hac1i bind Ume6-regulated early meiotic gene promoters directly, or is its repression of these genes entirely mediated through protein-protein association with the Rpd3-Sin3 HDAC?

Q: Which Hac1 targets require heterodimerization or cooperation with other factors (e.g. Gcn4) for UPRE recognition, and does this account for the different UPRE classes?

Suggested Experiments

Experiment: ChIP-seq of Hac1i under ER stress and in nitrogen-rich pre-meiotic conditions to distinguish directly bound activated versus repressed promoters.

Deep Research

SGD

(HAC1-deep-research-sgd.md)
SGD gene description for HAC1 (yeast) SGD

SGD gene description for HAC1 (yeast)

Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog); regulates the unfolded protein response (UPR) via UPRE binding and membrane biogenesis; translation initiation repressed under non-stress conditions by un-spliced intron that interacts with 5'-UTR; under ER stress Ire1p nuclease cleaves out inhibitory intron and triggers efficient Hac1p translation; involved in UPR-mediated suppression of aneuploidy; protein abundance increases in response to DNA replication stress

πŸ“š Additional Documentation

Notes

(HAC1-notes.md)

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