HSC82

UniProt ID: P15108
Organism: Saccharomyces cerevisiae
Review Status: IN PROGRESS
📝 Provide Detailed Feedback

Gene Description

HSC82 is the constitutive (cognate) isoform of Hsp90 in S. cerevisiae. It is an ATP-dependent molecular chaperone that promotes the maturation, structural maintenance, and proper regulation of specific client proteins, particularly those involved in cell cycle control and signal transduction. HSC82 functions as a homodimer (and can heterodimerize with HSP82), undergoing an ATP-dependent conformational cycle that acts as a molecular clamp on client proteins. It interacts with the same network of co-chaperones as HSP82 (STI1, AHA1, CDC37, SBA1, CPR6, CPR7, CNS1, SSE1, HCH1). HSC82 is expressed constitutively and accounts for the majority of Hsp90 protein under non-stress conditions.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0006457 protein folding
IBA
GO_REF:0000033
ACCEPT
Summary: HSC82/Hsp90 is a well-established protein folding chaperone. IBA annotation is consistent with the known function of this conserved chaperone family across eukaryotes.
Reason: Protein folding is a core biological process for Hsp90. UniProt describes HSC82 as an "ATP-dependent molecular chaperone" that promotes maturation and regulation of client proteins. IMP evidence from PMID:7791797 confirms involvement in protein folding.
GO:0016887 ATP hydrolysis activity
IBA
GO_REF:0000033
ACCEPT
Summary: HSC82 has well-characterized ATPase activity essential for its chaperone cycle. IBA annotation is correct.
Reason: ATPase activity is fundamental to Hsp90 function. Directly demonstrated by IDA (PMID:18492664). UniProt documents the ATP binding and hydrolysis mechanism.
GO:0032991 protein-containing complex
IBA
GO_REF:0000033
ACCEPT
Summary: HSC82 functions as a homodimer and forms complexes with many co-chaperones and client proteins.
Reason: HSC82 is a homodimer and forms well-characterized complexes with co-chaperones (STI1, AHA1, SBA1, CDC37, CPR6, CPR7, CNS1, SSE1). Also heterodimerizes with HSP82 (PMID:31454312).
GO:0005886 plasma membrane
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: IBA annotation for plasma membrane localization. HSC82 is primarily cytoplasmic but plasma membrane association has some HDA support (PMID:16622836).
Reason: HSC82 is primarily cytoplasmic. Plasma membrane localization is supported by HDA from PMID:16622836 (plasma membrane proteome study) but is not a core localization. A minor membrane-associated pool is plausible.
GO:0005524 ATP binding
IBA
GO_REF:0000033
ACCEPT
Summary: HSC82 binds ATP as part of its chaperone cycle. Well-established by crystallography of Hsp90 orthologs.
Reason: ATP binding is essential for Hsp90 function. The N-terminal domain contains the Bergerat ATP-binding fold. UniProt documents the ATP binding site residues.
GO:0005829 cytosol
IBA
GO_REF:0000033
ACCEPT
Summary: HSC82 is a cytosolic protein. IBA annotation is correct.
Reason: Consistent with HDA evidence for cytoplasm localization (PMID:14562095). Cytosol is the expected primary localization for Hsp90.
GO:0050821 protein stabilization
IBA
GO_REF:0000033
ACCEPT
Summary: HSC82 stabilizes client proteins as part of its chaperone function. IBA annotation is appropriate.
Reason: Protein stabilization is a core function of Hsp90. UniProt describes the role of HSC82 in stabilizing calcineurin (CNA2) under salt stress (PMID:11094077).
GO:0034605 cellular response to heat
IBA
GO_REF:0000033
ACCEPT
Summary: Although HSC82 is the constitutive isoform, it is still involved in heat stress response.
Reason: IMP evidence from PMID:2674684 confirms that both HSP82 and HSC82 are required for growth at elevated temperatures. While HSC82 is constitutively expressed, it still contributes to thermal tolerance.
GO:0051082 unfolded protein binding
IBA
GO_REF:0000033
MODIFY
Summary: GO:0051082 is proposed for obsoletion. HSC82 does interact with unfolded/misfolded client proteins but its mechanism is better captured by GO:0140662 (ATP-dependent protein folding chaperone).
Reason: GO:0051082 is proposed for obsoletion. HSC82 is an ATP-dependent foldase; while it does bind unfolded/non-native proteins as part of its chaperone cycle, the binding is coupled to ATP-driven conformational changes. The more appropriate term is GO:0140662 "ATP-dependent protein folding chaperone" which captures both the binding and the active folding mechanism. IDA evidence from PMID:9465043 demonstrated binding to denatured substrates, but this is part of the broader chaperone activity.
GO:0048471 perinuclear region of cytoplasm
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: IBA annotation for perinuclear localization. HSC82 is primarily cytoplasmic; perinuclear enrichment is inferred from ortholog data.
Reason: HSC82 is found in the cytoplasm. Perinuclear localization is inferred from orthologs and may represent a minor pool. Not a primary localization.
GO:0000166 nucleotide binding
IEA
GO_REF:0000043
ACCEPT
Summary: IEA annotation from UniProt keyword mapping. Broader than ATP binding but not incorrect.
Reason: Nucleotide binding is a parent term of ATP binding. While more specific IBA and IEA annotations for ATP binding exist, this broader IEA annotation is not incorrect.
GO:0000492 box C/D snoRNP assembly
IEA
GO_REF:0000117
KEEP AS NON CORE
Summary: ARBA machine learning prediction for snoRNP assembly involvement. Supported by IMP evidence.
Reason: Supported by IMP evidence (PMID:18268103) which showed Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex activity that regulates snoRNA accumulation. This is a legitimate but secondary function of Hsp90.
GO:0005524 ATP binding
IEA
GO_REF:0000120
ACCEPT
Summary: IEA annotation for ATP binding. Consistent with IBA and experimental evidence.
Reason: Redundant with IBA annotation but correct. ATP binding is a core molecular function of HSC82.
GO:0005737 cytoplasm
IEA
GO_REF:0000044
ACCEPT
Summary: IEA annotation for cytoplasm from UniProt subcellular location mapping. Correct.
Reason: Consistent with HDA evidence for cytoplasmic localization (PMID:14562095).
GO:0005739 mitochondrion
IEA
GO_REF:0000044
KEEP AS NON CORE
Summary: IEA annotation for mitochondrial localization from UniProt. Supported by HDA evidence.
Reason: HSC82 has been detected in mitochondrial proteome studies (PMID:14576278, PMID:16823961). This is likely a minor pool; the primary localization is cytoplasmic. Not a core localization.
GO:0006457 protein folding
IEA
GO_REF:0000120
ACCEPT
Summary: IEA annotation for protein folding. Redundant with IBA but correct.
Reason: Consistent with IBA and experimental annotations for protein folding involvement.
GO:0016887 ATP hydrolysis activity
IEA
GO_REF:0000120
ACCEPT
Summary: IEA annotation for ATP hydrolysis activity. Redundant with IBA and IDA but correct.
Reason: Consistent with IBA and IDA (PMID:18492664) annotations for ATPase activity.
GO:0043248 proteasome assembly
IEA
GO_REF:0000117
KEEP AS NON CORE
Summary: ARBA prediction for proteasome assembly involvement. Supported by IMP evidence.
Reason: Supported by IMP evidence (PMID:12853471). Hsp90 assists in proteasome assembly as one of its client-dependent functions. Not a core function of HSC82 per se.
GO:0051082 unfolded protein binding
IEA
GO_REF:0000120
MODIFY
Summary: IEA annotation for unfolded protein binding. Same issue as IBA annotation - term proposed for obsoletion.
Reason: GO:0051082 is proposed for obsoletion. Should be replaced with GO:0140662 "ATP-dependent protein folding chaperone" which better captures the active chaperone mechanism.
GO:0140662 ATP-dependent protein folding chaperone
IEA
GO_REF:0000002
ACCEPT
Summary: IEA annotation from InterPro for ATP-dependent protein folding chaperone. This is the correct and most informative molecular function term for HSC82.
Reason: GO:0140662 is the ideal molecular function term for HSC82/Hsp90. It captures both the ATP dependence and the protein folding chaperone activity. This should be considered the primary MF annotation for HSC82.
GO:0005515 protein binding
IPI
PMID:11805826
Functional organization of the yeast proteome by systematic ...
MARK AS OVER ANNOTATED
Summary: IPI from large-scale protein complex study. Uninformative "protein binding" annotation.
Reason: "Protein binding" is uninformative for a molecular chaperone that by definition binds many proteins. The more informative annotation is GO:0140662 (ATP-dependent protein folding chaperone).
GO:0005515 protein binding
IPI
PMID:11805837
Systematic identification of protein complexes in Saccharomy...
MARK AS OVER ANNOTATED
Summary: IPI from mass spectrometry study. Uninformative "protein binding" annotation.
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:15699485
Analysis of polyubiquitin conjugates reveals that the Rpn10 ...
MARK AS OVER ANNOTATED
Summary: IPI from polyubiquitin conjugate study.
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:15766533
Navigating the chaperone network: an integrative map of phys...
MARK AS OVER ANNOTATED
Summary: IPI from large-scale chaperone network study (Zhao et al 2005).
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:16429126
Proteome survey reveals modularity of the yeast cell machine...
MARK AS OVER ANNOTATED
Summary: IPI from proteome survey.
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:16554755
Global landscape of protein complexes in the yeast Saccharom...
MARK AS OVER ANNOTATED
Summary: IPI from large-scale protein complex study (Krogan et al 2006).
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:18719252
High-quality binary protein interaction map of the yeast int...
MARK AS OVER ANNOTATED
Summary: IPI from high-quality binary interaction map.
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:19536198
An atlas of chaperone-protein interactions in Saccharomyces ...
MARK AS OVER ANNOTATED
Summary: IPI from atlas of chaperone-protein interactions.
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:21734642
Combinatorial depletion analysis to assemble the network arc...
MARK AS OVER ANNOTATED
Summary: IPI from SAGA/ADA complex study.
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:23217712
CDK-dependent Hsp70 Phosphorylation controls G1 cyclin abund...
MARK AS OVER ANNOTATED
Summary: IPI from CDK-dependent Hsp70 phosphorylation study.
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:25073740
Molecular architecture and function of the SEA complex, a mo...
MARK AS OVER ANNOTATED
Summary: IPI from protein interaction study.
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:31454312
The role of structural pleiotropy and regulatory evolution i...
MARK AS OVER ANNOTATED
Summary: IPI from structural pleiotropy study of Hsp90 paralogs. Documents HSP82-HSC82 heterodimerization.
Reason: While the HSP82-HSC82 heterodimerization is biologically interesting, "protein binding" is uninformative. The heterodimerization could be captured by GO:0042802 (identical protein binding) or a more specific term.
GO:0005515 protein binding
IPI
PMID:37070168
RNA-dependent interactome allows network-based assignment of...
MARK AS OVER ANNOTATED
Summary: IPI from RNA-dependent interactome study.
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:37968396
The social and structural architecture of the yeast protein ...
MARK AS OVER ANNOTATED
Summary: IPI from yeast protein interactome architecture study.
Reason: Uninformative "protein binding" for a chaperone.
GO:0005515 protein binding
IPI
PMID:9819421
CNS1 encodes an essential p60/Sti1 homolog in Saccharomyces ...
MARK AS OVER ANNOTATED
Summary: IPI from Cns1/Hsp90 interaction study.
Reason: Uninformative "protein binding" for a chaperone.
GO:0070482 response to oxygen levels
NAS
PMID:9632766
Molecular mechanism governing heme signaling in yeast: a hig...
KEEP AS NON CORE
Summary: NAS annotation based on HSC82 involvement in HAP1-mediated heme signaling.
Reason: HSC82 (like HSP82) forms a complex with HAP1, a transcriptional activator regulated by heme (proxy for oxygen). This is a client-dependent function. The NAS evidence is weak but the underlying biology is plausible.
GO:0005737 cytoplasm
HDA
PMID:14562095
Global analysis of protein localization in budding yeast.
ACCEPT
Summary: High-throughput GFP localization data confirming cytoplasm.
Reason: Global protein localization study. Core localization of HSC82.
GO:0005739 mitochondrion
HDA
PMID:14576278
The proteome of Saccharomyces cerevisiae mitochondria.
KEEP AS NON CORE
Summary: HDA for mitochondrial localization from mitochondrial proteome study.
Reason: HSC82 was detected in the yeast mitochondrial proteome, suggesting a minor mitochondrial pool. Not a primary localization.
GO:0005739 mitochondrion
HDA
PMID:16823961
Toward the complete yeast mitochondrial proteome: multidimen...
KEEP AS NON CORE
Summary: Additional HDA for mitochondrial localization from mitochondrial proteomics.
Reason: Consistent with PMID:14576278 for a minor mitochondrial pool. Not a core localization.
GO:0005886 plasma membrane
HDA
PMID:16622836
The plasma membrane proteome of Saccharomyces cerevisiae and...
KEEP AS NON CORE
Summary: HDA for plasma membrane localization from plasma membrane proteomics study.
Reason: HSC82 was detected in the plasma membrane proteome, suggesting a minor membrane-associated pool. Not a primary localization.
GO:0034605 cellular response to heat
IMP
PMID:2674684
hsp82 is an essential protein that is required in higher con...
ACCEPT
Summary: IMP evidence showing that Hsp90 is essential for growth at elevated temperatures.
Reason: Study demonstrated that both HSP82 and HSC82 are required for growth at high temperatures. HSC82 is constitutively expressed but still contributes to heat stress tolerance.
GO:0000492 box C/D snoRNP assembly
IMP
PMID:18268103
Molecular chaperone Hsp90 stabilizes Pih1/Nop17 to maintain ...
KEEP AS NON CORE
Summary: IMP evidence showing Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex for snoRNP assembly.
Reason: Hsp90 acts on the R2TP pathway components (Pih1, Tah1) that are required for snoRNP assembly. Client-dependent function, not core.
GO:0000723 telomere maintenance
IMP
PMID:17954556
The hsp90 molecular chaperone modulates multiple telomerase ...
KEEP AS NON CORE
Summary: IMP evidence showing Hsp90 modulates telomerase activities.
Reason: Hsp90 chaperones telomerase components. This is a client-dependent function, not a core function of HSC82 itself.
GO:0006457 protein folding
IMP
PMID:7791797
Mutational analysis of Hsp90 function: interactions with a s...
ACCEPT
Summary: IMP evidence for protein folding from early characterization study.
Reason: Core biological process for HSC82/Hsp90. Directly demonstrates the role in protein folding.
GO:0016887 ATP hydrolysis activity
IDA
PMID:18492664
Intra- and intermonomer interactions are required to synergi...
ACCEPT
Summary: Direct assay evidence for ATPase activity of HSC82. Intra- and intermonomer interactions are required for ATP hydrolysis.
Reason: Core molecular function. Direct biochemical measurement of ATPase activity showing that both intra- and intermonomer interactions synergistically facilitate ATP hydrolysis.
GO:0043248 proteasome assembly
IMP
PMID:12853471
The molecular chaperone Hsp90 plays a role in the assembly a...
KEEP AS NON CORE
Summary: IMP evidence for proteasome assembly involvement.
Reason: HSC82 assists in proteasome assembly as a client-dependent function. Secondary to core chaperone activity.
GO:0051082 unfolded protein binding
IDA
PMID:9465043
Two chaperone sites in Hsp90 differing in substrate specific...
MODIFY
Summary: IDA evidence for unfolded protein binding. Term proposed for obsoletion.
Reason: While the experimental evidence is solid (HSC82 does bind unfolded proteins), GO:0051082 is proposed for obsoletion. The binding of unfolded proteins is part of the ATP-dependent chaperone mechanism, better captured by GO:0140662 "ATP-dependent protein folding chaperone."

Core Functions

Primary molecular function: ATP-dependent protein folding chaperone. HSC82 binds to client proteins and assists their folding through an ATP-dependent conformational cycle. Supported by IEA from InterPro, IDA evidence for ATP hydrolysis (PMID:18492664), and IDA evidence for unfolded protein binding (PMID:9465043).

ATPase activity is fundamental to the Hsp90 chaperone cycle. Directly demonstrated by IDA (PMID:18492664). Intra- and intermonomer interactions synergistically facilitate ATP hydrolysis.

Molecular Function:
ATP hydrolysis activity
Directly Involved In:
Cellular Locations:

References

Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
Functional organization of the yeast proteome by systematic analysis of protein complexes.
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
The molecular chaperone Hsp90 plays a role in the assembly and maintenance of the 26S proteasome.
Global analysis of protein localization in budding yeast.
The proteome of Saccharomyces cerevisiae mitochondria.
Analysis of polyubiquitin conjugates reveals that the Rpn10 substrate receptor contributes to the turnover of multiple proteasome targets.
Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone.
Proteome survey reveals modularity of the yeast cell machinery.
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.
The plasma membrane proteome of Saccharomyces cerevisiae and its response to the antifungal calcofluor.
Toward the complete yeast mitochondrial proteome: multidimensional separation techniques for mitochondrial proteomics.
The hsp90 molecular chaperone modulates multiple telomerase activities.
Molecular chaperone Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex activity that regulates snoRNA accumulation.
Intra- and intermonomer interactions are required to synergistically facilitate ATP hydrolysis in Hsp90.
  • Direct biochemical measurement of ATPase activity showing intra- and intermonomer cooperation
High-quality binary protein interaction map of the yeast interactome network.
An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell.
Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes.
CDK-dependent Hsp70 Phosphorylation controls G1 cyclin abundance and cell-cycle progression.
Molecular architecture and function of the SEA complex, a modulator of the TORC1 pathway.
hsp82 is an essential protein that is required in higher concentrations for growth of cells at higher temperatures.
  • Both HSP82 and HSC82 are required for growth at elevated temperatures
The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs.
RNA-dependent interactome allows network-based assignment of RNA-binding protein function.
The social and structural architecture of the yeast protein interactome.
Mutational analysis of Hsp90 function: interactions with a steroid receptor and a protein kinase.
  • Hsp90 is required for protein folding in vivo
Two chaperone sites in Hsp90 differing in substrate specificity and ATP dependence.
  • HSC82 binds unfolded proteins
Molecular mechanism governing heme signaling in yeast: a higher-order complex mediates heme regulation of the transcriptional activator HAP1.
CNS1 encodes an essential p60/Sti1 homolog in Saccharomyces cerevisiae that suppresses cyclophilin 40 mutations and interacts with Hsp90.
Role of HSP90 in salt stress tolerance via stabilization and regulation of calcineurin.
  • HSC82 stabilizes and regulates calcineurin (CNA2) under salt stress conditions

📄 View Raw YAML

id: P15108
gene_symbol: HSC82
product_type: PROTEIN
status: IN_PROGRESS
taxon:
  id: NCBITaxon:559292
  label: Saccharomyces cerevisiae
description: >-
  HSC82 is the constitutive (cognate) isoform of Hsp90 in S. cerevisiae. It is an ATP-dependent molecular
  chaperone that promotes the maturation, structural maintenance, and proper regulation of specific client
  proteins, particularly those involved in cell cycle control and signal transduction. HSC82 functions as a
  homodimer (and can heterodimerize with HSP82), undergoing an ATP-dependent conformational cycle that acts
  as a molecular clamp on client proteins. It interacts with the same network of co-chaperones as HSP82
  (STI1, AHA1, CDC37, SBA1, CPR6, CPR7, CNS1, SSE1, HCH1). HSC82 is expressed constitutively and accounts
  for the majority of Hsp90 protein under non-stress conditions.
existing_annotations:
# ============================================================================
# IBA ANNOTATIONS
# ============================================================================
- term:
    id: GO:0006457
    label: protein folding
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      HSC82/Hsp90 is a well-established protein folding chaperone. IBA annotation is consistent with the
      known function of this conserved chaperone family across eukaryotes.
    action: ACCEPT
    reason: >-
      Protein folding is a core biological process for Hsp90. UniProt describes HSC82 as an "ATP-dependent
      molecular chaperone" that promotes maturation and regulation of client proteins. IMP evidence from
      PMID:7791797 confirms involvement in protein folding.
- term:
    id: GO:0016887
    label: ATP hydrolysis activity
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      HSC82 has well-characterized ATPase activity essential for its chaperone cycle. IBA annotation is correct.
    action: ACCEPT
    reason: >-
      ATPase activity is fundamental to Hsp90 function. Directly demonstrated by IDA (PMID:18492664).
      UniProt documents the ATP binding and hydrolysis mechanism.
- term:
    id: GO:0032991
    label: protein-containing complex
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      HSC82 functions as a homodimer and forms complexes with many co-chaperones and client proteins.
    action: ACCEPT
    reason: >-
      HSC82 is a homodimer and forms well-characterized complexes with co-chaperones (STI1, AHA1, SBA1,
      CDC37, CPR6, CPR7, CNS1, SSE1). Also heterodimerizes with HSP82 (PMID:31454312).
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      IBA annotation for plasma membrane localization. HSC82 is primarily cytoplasmic but plasma membrane
      association has some HDA support (PMID:16622836).
    action: KEEP_AS_NON_CORE
    reason: >-
      HSC82 is primarily cytoplasmic. Plasma membrane localization is supported by HDA from PMID:16622836
      (plasma membrane proteome study) but is not a core localization. A minor membrane-associated pool
      is plausible.
- term:
    id: GO:0005524
    label: ATP binding
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      HSC82 binds ATP as part of its chaperone cycle. Well-established by crystallography of Hsp90 orthologs.
    action: ACCEPT
    reason: >-
      ATP binding is essential for Hsp90 function. The N-terminal domain contains the Bergerat ATP-binding
      fold. UniProt documents the ATP binding site residues.
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      HSC82 is a cytosolic protein. IBA annotation is correct.
    action: ACCEPT
    reason: >-
      Consistent with HDA evidence for cytoplasm localization (PMID:14562095). Cytosol is the expected
      primary localization for Hsp90.
- term:
    id: GO:0050821
    label: protein stabilization
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      HSC82 stabilizes client proteins as part of its chaperone function. IBA annotation is appropriate.
    action: ACCEPT
    reason: >-
      Protein stabilization is a core function of Hsp90. UniProt describes the role of HSC82 in stabilizing
      calcineurin (CNA2) under salt stress (PMID:11094077).
- term:
    id: GO:0034605
    label: cellular response to heat
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      Although HSC82 is the constitutive isoform, it is still involved in heat stress response.
    action: ACCEPT
    reason: >-
      IMP evidence from PMID:2674684 confirms that both HSP82 and HSC82 are required for growth at
      elevated temperatures. While HSC82 is constitutively expressed, it still contributes to
      thermal tolerance.
- term:
    id: GO:0051082
    label: unfolded protein binding
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      GO:0051082 is proposed for obsoletion. HSC82 does interact with unfolded/misfolded client proteins
      but its mechanism is better captured by GO:0140662 (ATP-dependent protein folding chaperone).
    action: MODIFY
    reason: >-
      GO:0051082 is proposed for obsoletion. HSC82 is an ATP-dependent foldase; while it does bind
      unfolded/non-native proteins as part of its chaperone cycle, the binding is coupled to ATP-driven
      conformational changes. The more appropriate term is GO:0140662 "ATP-dependent protein folding
      chaperone" which captures both the binding and the active folding mechanism. IDA evidence
      from PMID:9465043 demonstrated binding to denatured substrates, but this is part of the broader
      chaperone activity.
    proposed_replacement_terms:
    - id: GO:0140662
      label: ATP-dependent protein folding chaperone
- term:
    id: GO:0048471
    label: perinuclear region of cytoplasm
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  review:
    summary: >-
      IBA annotation for perinuclear localization. HSC82 is primarily cytoplasmic; perinuclear
      enrichment is inferred from ortholog data.
    action: KEEP_AS_NON_CORE
    reason: >-
      HSC82 is found in the cytoplasm. Perinuclear localization is inferred from orthologs and may
      represent a minor pool. Not a primary localization.
# ============================================================================
# IEA ANNOTATIONS
# ============================================================================
- term:
    id: GO:0000166
    label: nucleotide binding
  evidence_type: IEA
  original_reference_id: GO_REF:0000043
  review:
    summary: >-
      IEA annotation from UniProt keyword mapping. Broader than ATP binding but not incorrect.
    action: ACCEPT
    reason: >-
      Nucleotide binding is a parent term of ATP binding. While more specific IBA and IEA annotations
      for ATP binding exist, this broader IEA annotation is not incorrect.
- term:
    id: GO:0000492
    label: box C/D snoRNP assembly
  evidence_type: IEA
  original_reference_id: GO_REF:0000117
  review:
    summary: >-
      ARBA machine learning prediction for snoRNP assembly involvement. Supported by IMP evidence.
    action: KEEP_AS_NON_CORE
    reason: >-
      Supported by IMP evidence (PMID:18268103) which showed Hsp90 stabilizes Pih1/Nop17 to maintain
      R2TP complex activity that regulates snoRNA accumulation. This is a legitimate but secondary
      function of Hsp90.
- term:
    id: GO:0005524
    label: ATP binding
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  review:
    summary: >-
      IEA annotation for ATP binding. Consistent with IBA and experimental evidence.
    action: ACCEPT
    reason: >-
      Redundant with IBA annotation but correct. ATP binding is a core molecular function of HSC82.
- term:
    id: GO:0005737
    label: cytoplasm
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  review:
    summary: >-
      IEA annotation for cytoplasm from UniProt subcellular location mapping. Correct.
    action: ACCEPT
    reason: >-
      Consistent with HDA evidence for cytoplasmic localization (PMID:14562095).
- term:
    id: GO:0005739
    label: mitochondrion
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  review:
    summary: >-
      IEA annotation for mitochondrial localization from UniProt. Supported by HDA evidence.
    action: KEEP_AS_NON_CORE
    reason: >-
      HSC82 has been detected in mitochondrial proteome studies (PMID:14576278, PMID:16823961). This is
      likely a minor pool; the primary localization is cytoplasmic. Not a core localization.
- term:
    id: GO:0006457
    label: protein folding
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  review:
    summary: >-
      IEA annotation for protein folding. Redundant with IBA but correct.
    action: ACCEPT
    reason: >-
      Consistent with IBA and experimental annotations for protein folding involvement.
- term:
    id: GO:0016887
    label: ATP hydrolysis activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  review:
    summary: >-
      IEA annotation for ATP hydrolysis activity. Redundant with IBA and IDA but correct.
    action: ACCEPT
    reason: >-
      Consistent with IBA and IDA (PMID:18492664) annotations for ATPase activity.
- term:
    id: GO:0043248
    label: proteasome assembly
  evidence_type: IEA
  original_reference_id: GO_REF:0000117
  review:
    summary: >-
      ARBA prediction for proteasome assembly involvement. Supported by IMP evidence.
    action: KEEP_AS_NON_CORE
    reason: >-
      Supported by IMP evidence (PMID:12853471). Hsp90 assists in proteasome assembly as one of
      its client-dependent functions. Not a core function of HSC82 per se.
- term:
    id: GO:0051082
    label: unfolded protein binding
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  review:
    summary: >-
      IEA annotation for unfolded protein binding. Same issue as IBA annotation - term proposed for obsoletion.
    action: MODIFY
    reason: >-
      GO:0051082 is proposed for obsoletion. Should be replaced with GO:0140662 "ATP-dependent
      protein folding chaperone" which better captures the active chaperone mechanism.
    proposed_replacement_terms:
    - id: GO:0140662
      label: ATP-dependent protein folding chaperone
- term:
    id: GO:0140662
    label: ATP-dependent protein folding chaperone
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  review:
    summary: >-
      IEA annotation from InterPro for ATP-dependent protein folding chaperone. This is the correct
      and most informative molecular function term for HSC82.
    action: ACCEPT
    reason: >-
      GO:0140662 is the ideal molecular function term for HSC82/Hsp90. It captures both the ATP
      dependence and the protein folding chaperone activity. This should be considered the primary
      MF annotation for HSC82.
# ============================================================================
# IPI PROTEIN BINDING ANNOTATIONS
# ============================================================================
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:11805826
  review:
    summary: >-
      IPI from large-scale protein complex study. Uninformative "protein binding" annotation.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      "Protein binding" is uninformative for a molecular chaperone that by definition binds many
      proteins. The more informative annotation is GO:0140662 (ATP-dependent protein folding chaperone).
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:11805837
  review:
    summary: >-
      IPI from mass spectrometry study. Uninformative "protein binding" annotation.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:15699485
  review:
    summary: >-
      IPI from polyubiquitin conjugate study.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:15766533
  review:
    summary: >-
      IPI from large-scale chaperone network study (Zhao et al 2005).
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:16429126
  review:
    summary: >-
      IPI from proteome survey.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:16554755
  review:
    summary: >-
      IPI from large-scale protein complex study (Krogan et al 2006).
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:18719252
  review:
    summary: >-
      IPI from high-quality binary interaction map.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:19536198
  review:
    summary: >-
      IPI from atlas of chaperone-protein interactions.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:21734642
  review:
    summary: >-
      IPI from SAGA/ADA complex study.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:23217712
  review:
    summary: >-
      IPI from CDK-dependent Hsp70 phosphorylation study.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:25073740
  review:
    summary: >-
      IPI from protein interaction study.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:31454312
  review:
    summary: >-
      IPI from structural pleiotropy study of Hsp90 paralogs. Documents HSP82-HSC82 heterodimerization.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      While the HSP82-HSC82 heterodimerization is biologically interesting, "protein binding"
      is uninformative. The heterodimerization could be captured by GO:0042802 (identical protein binding)
      or a more specific term.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:37070168
  review:
    summary: >-
      IPI from RNA-dependent interactome study.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:37968396
  review:
    summary: >-
      IPI from yeast protein interactome architecture study.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:9819421
  review:
    summary: >-
      IPI from Cns1/Hsp90 interaction study.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative "protein binding" for a chaperone.
# ============================================================================
# OTHER EXPERIMENTAL ANNOTATIONS
# ============================================================================
- term:
    id: GO:0070482
    label: response to oxygen levels
  evidence_type: NAS
  original_reference_id: PMID:9632766
  review:
    summary: >-
      NAS annotation based on HSC82 involvement in HAP1-mediated heme signaling.
    action: KEEP_AS_NON_CORE
    reason: >-
      HSC82 (like HSP82) forms a complex with HAP1, a transcriptional activator regulated by heme
      (proxy for oxygen). This is a client-dependent function. The NAS evidence is weak but the
      underlying biology is plausible.
- term:
    id: GO:0005737
    label: cytoplasm
  evidence_type: HDA
  original_reference_id: PMID:14562095
  review:
    summary: >-
      High-throughput GFP localization data confirming cytoplasm.
    action: ACCEPT
    reason: >-
      Global protein localization study. Core localization of HSC82.
- term:
    id: GO:0005739
    label: mitochondrion
  evidence_type: HDA
  original_reference_id: PMID:14576278
  review:
    summary: >-
      HDA for mitochondrial localization from mitochondrial proteome study.
    action: KEEP_AS_NON_CORE
    reason: >-
      HSC82 was detected in the yeast mitochondrial proteome, suggesting a minor mitochondrial pool.
      Not a primary localization.
- term:
    id: GO:0005739
    label: mitochondrion
  evidence_type: HDA
  original_reference_id: PMID:16823961
  review:
    summary: >-
      Additional HDA for mitochondrial localization from mitochondrial proteomics.
    action: KEEP_AS_NON_CORE
    reason: >-
      Consistent with PMID:14576278 for a minor mitochondrial pool. Not a core localization.
- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: HDA
  original_reference_id: PMID:16622836
  review:
    summary: >-
      HDA for plasma membrane localization from plasma membrane proteomics study.
    action: KEEP_AS_NON_CORE
    reason: >-
      HSC82 was detected in the plasma membrane proteome, suggesting a minor membrane-associated pool.
      Not a primary localization.
- term:
    id: GO:0034605
    label: cellular response to heat
  evidence_type: IMP
  original_reference_id: PMID:2674684
  review:
    summary: >-
      IMP evidence showing that Hsp90 is essential for growth at elevated temperatures.
    action: ACCEPT
    reason: >-
      Study demonstrated that both HSP82 and HSC82 are required for growth at high temperatures.
      HSC82 is constitutively expressed but still contributes to heat stress tolerance.
- term:
    id: GO:0000492
    label: box C/D snoRNP assembly
  evidence_type: IMP
  original_reference_id: PMID:18268103
  review:
    summary: >-
      IMP evidence showing Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex for snoRNP assembly.
    action: KEEP_AS_NON_CORE
    reason: >-
      Hsp90 acts on the R2TP pathway components (Pih1, Tah1) that are required for snoRNP assembly.
      Client-dependent function, not core.
- term:
    id: GO:0000723
    label: telomere maintenance
  evidence_type: IMP
  original_reference_id: PMID:17954556
  review:
    summary: >-
      IMP evidence showing Hsp90 modulates telomerase activities.
    action: KEEP_AS_NON_CORE
    reason: >-
      Hsp90 chaperones telomerase components. This is a client-dependent function, not a core
      function of HSC82 itself.
- term:
    id: GO:0006457
    label: protein folding
  evidence_type: IMP
  original_reference_id: PMID:7791797
  review:
    summary: >-
      IMP evidence for protein folding from early characterization study.
    action: ACCEPT
    reason: >-
      Core biological process for HSC82/Hsp90. Directly demonstrates the role in protein folding.
- term:
    id: GO:0016887
    label: ATP hydrolysis activity
  evidence_type: IDA
  original_reference_id: PMID:18492664
  review:
    summary: >-
      Direct assay evidence for ATPase activity of HSC82. Intra- and intermonomer interactions
      are required for ATP hydrolysis.
    action: ACCEPT
    reason: >-
      Core molecular function. Direct biochemical measurement of ATPase activity showing that both
      intra- and intermonomer interactions synergistically facilitate ATP hydrolysis.
- term:
    id: GO:0043248
    label: proteasome assembly
  evidence_type: IMP
  original_reference_id: PMID:12853471
  review:
    summary: >-
      IMP evidence for proteasome assembly involvement.
    action: KEEP_AS_NON_CORE
    reason: >-
      HSC82 assists in proteasome assembly as a client-dependent function. Secondary to core
      chaperone activity.
- term:
    id: GO:0051082
    label: unfolded protein binding
  evidence_type: IDA
  original_reference_id: PMID:9465043
  review:
    summary: >-
      IDA evidence for unfolded protein binding. Term proposed for obsoletion.
    action: MODIFY
    reason: >-
      While the experimental evidence is solid (HSC82 does bind unfolded proteins), GO:0051082
      is proposed for obsoletion. The binding of unfolded proteins is part of the ATP-dependent
      chaperone mechanism, better captured by GO:0140662 "ATP-dependent protein folding chaperone."
    proposed_replacement_terms:
    - id: GO:0140662
      label: ATP-dependent protein folding chaperone
core_functions:
- description: >-
    Primary molecular function: ATP-dependent protein folding chaperone. HSC82 binds to
    client proteins and assists their folding through an ATP-dependent conformational cycle.
    Supported by IEA from InterPro, IDA evidence for ATP hydrolysis (PMID:18492664), and
    IDA evidence for unfolded protein binding (PMID:9465043).
  molecular_function:
    id: GO:0140662
    label: ATP-dependent protein folding chaperone
  directly_involved_in:
  - id: GO:0006457
    label: protein folding
  - id: GO:0034605
    label: cellular response to heat
  locations:
  - id: GO:0005737
    label: cytoplasm
- description: >-
    ATPase activity is fundamental to the Hsp90 chaperone cycle. Directly demonstrated by
    IDA (PMID:18492664). Intra- and intermonomer interactions synergistically facilitate
    ATP hydrolysis.
  molecular_function:
    id: GO:0016887
    label: ATP hydrolysis activity
  directly_involved_in:
  - id: GO:0006457
    label: protein folding
  locations:
  - id: GO:0005737
    label: cytoplasm
references:
- id: GO_REF:0000002
  title: Gene Ontology annotation through association of InterPro records with GO terms
  findings: []
- id: GO_REF:0000033
  title: Annotation inferences using phylogenetic trees
  findings: []
- id: GO_REF:0000043
  title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
  findings: []
- id: GO_REF:0000044
  title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
    vocabulary mapping, accompanied by conservative changes to GO terms applied by
    UniProt
  findings: []
- id: GO_REF:0000117
  title: Electronic Gene Ontology annotations created by ARBA machine learning models
  findings: []
- id: GO_REF:0000120
  title: Combined Automated Annotation using Multiple IEA Methods
  findings: []
- id: PMID:11805826
  title: Functional organization of the yeast proteome by systematic analysis of protein
    complexes.
  findings: []
- id: PMID:11805837
  title: Systematic identification of protein complexes in Saccharomyces cerevisiae
    by mass spectrometry.
  findings: []
- id: PMID:12853471
  title: The molecular chaperone Hsp90 plays a role in the assembly and maintenance of the 26S proteasome.
  findings: []
- id: PMID:14562095
  title: Global analysis of protein localization in budding yeast.
  findings: []
- id: PMID:14576278
  title: The proteome of Saccharomyces cerevisiae mitochondria.
  findings: []
- id: PMID:15699485
  title: Analysis of polyubiquitin conjugates reveals that the Rpn10 substrate receptor
    contributes to the turnover of multiple proteasome targets.
  findings: []
- id: PMID:15766533
  title: 'Navigating the chaperone network: an integrative map of physical and genetic
    interactions mediated by the hsp90 chaperone.'
  findings: []
- id: PMID:16429126
  title: Proteome survey reveals modularity of the yeast cell machinery.
  findings: []
- id: PMID:16554755
  title: Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.
  findings: []
- id: PMID:16622836
  title: The plasma membrane proteome of Saccharomyces cerevisiae and its response
    to the antifungal calcofluor.
  findings: []
- id: PMID:16823961
  title: 'Toward the complete yeast mitochondrial proteome: multidimensional separation
    techniques for mitochondrial proteomics.'
  findings: []
- id: PMID:17954556
  title: The hsp90 molecular chaperone modulates multiple telomerase activities.
  findings: []
- id: PMID:18268103
  title: Molecular chaperone Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex
    activity that regulates snoRNA accumulation.
  findings: []
- id: PMID:18492664
  title: Intra- and intermonomer interactions are required to synergistically facilitate
    ATP hydrolysis in Hsp90.
  findings:
  - statement: Direct biochemical measurement of ATPase activity showing intra- and intermonomer cooperation
- id: PMID:18719252
  title: High-quality binary protein interaction map of the yeast interactome network.
  findings: []
- id: PMID:19536198
  title: 'An atlas of chaperone-protein interactions in Saccharomyces cerevisiae:
    implications to protein folding pathways in the cell.'
  findings: []
- id: PMID:21734642
  title: Combinatorial depletion analysis to assemble the network architecture of
    the SAGA and ADA chromatin remodeling complexes.
  findings: []
- id: PMID:23217712
  title: CDK-dependent Hsp70 Phosphorylation controls G1 cyclin abundance and cell-cycle
    progression.
  findings: []
- id: PMID:25073740
  title: Molecular architecture and function of the SEA complex, a modulator of the TORC1 pathway.
  findings: []
- id: PMID:2674684
  title: hsp82 is an essential protein that is required in higher concentrations for
    growth of cells at higher temperatures.
  findings:
  - statement: Both HSP82 and HSC82 are required for growth at elevated temperatures
- id: PMID:31454312
  title: The role of structural pleiotropy and regulatory evolution in the retention
    of heteromers of paralogs.
  findings: []
- id: PMID:37070168
  title: RNA-dependent interactome allows network-based assignment of RNA-binding
    protein function.
  findings: []
- id: PMID:37968396
  title: The social and structural architecture of the yeast protein interactome.
  findings: []
- id: PMID:7791797
  title: 'Mutational analysis of Hsp90 function: interactions with a steroid receptor and a protein kinase.'
  findings:
  - statement: Hsp90 is required for protein folding in vivo
- id: PMID:9465043
  title: Two chaperone sites in Hsp90 differing in substrate specificity and ATP dependence.
  findings:
  - statement: HSC82 binds unfolded proteins
- id: PMID:9632766
  title: 'Molecular mechanism governing heme signaling in yeast: a higher-order complex
    mediates heme regulation of the transcriptional activator HAP1.'
  findings: []
- id: PMID:9819421
  title: CNS1 encodes an essential p60/Sti1 homolog in Saccharomyces cerevisiae that
    suppresses cyclophilin 40 mutations and interacts with Hsp90.
  findings: []
- id: PMID:11094077
  title: Role of HSP90 in salt stress tolerance via stabilization and regulation of calcineurin.
  findings:
  - statement: HSC82 stabilizes and regulates calcineurin (CNA2) under salt stress conditions