HSC82 is the constitutive (cognate) isoform of Hsp90 in S. cerevisiae. It is an ATP-dependent molecular chaperone that promotes the maturation, structural maintenance, and proper regulation of specific client proteins, particularly those involved in cell cycle control and signal transduction. HSC82 functions as a homodimer (and can heterodimerize with HSP82), undergoing an ATP-dependent conformational cycle that acts as a molecular clamp on client proteins. It interacts with the same network of co-chaperones as HSP82 (STI1, AHA1, CDC37, SBA1, CPR6, CPR7, CNS1, SSE1, HCH1). HSC82 is expressed constitutively and accounts for the majority of Hsp90 protein under non-stress conditions.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0006457
protein folding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HSC82/Hsp90 is a well-established protein folding chaperone. IBA annotation is consistent with the known function of this conserved chaperone family across eukaryotes.
Reason: Protein folding is a core biological process for Hsp90. UniProt describes HSC82 as an "ATP-dependent molecular chaperone" that promotes maturation and regulation of client proteins. IMP evidence from PMID:7791797 confirms involvement in protein folding.
|
|
GO:0016887
ATP hydrolysis activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HSC82 has well-characterized ATPase activity essential for its chaperone cycle. IBA annotation is correct.
Reason: ATPase activity is fundamental to Hsp90 function. Directly demonstrated by IDA (PMID:18492664). UniProt documents the ATP binding and hydrolysis mechanism.
|
|
GO:0032991
protein-containing complex
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HSC82 functions as a homodimer and forms complexes with many co-chaperones and client proteins.
Reason: HSC82 is a homodimer and forms well-characterized complexes with co-chaperones (STI1, AHA1, SBA1, CDC37, CPR6, CPR7, CNS1, SSE1). Also heterodimerizes with HSP82 (PMID:31454312).
|
|
GO:0005886
plasma membrane
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: IBA annotation for plasma membrane localization. HSC82 is primarily cytoplasmic but plasma membrane association has some HDA support (PMID:16622836).
Reason: HSC82 is primarily cytoplasmic. Plasma membrane localization is supported by HDA from PMID:16622836 (plasma membrane proteome study) but is not a core localization. A minor membrane-associated pool is plausible.
|
|
GO:0005524
ATP binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HSC82 binds ATP as part of its chaperone cycle. Well-established by crystallography of Hsp90 orthologs.
Reason: ATP binding is essential for Hsp90 function. The N-terminal domain contains the Bergerat ATP-binding fold. UniProt documents the ATP binding site residues.
|
|
GO:0005829
cytosol
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HSC82 is a cytosolic protein. IBA annotation is correct.
Reason: Consistent with HDA evidence for cytoplasm localization (PMID:14562095). Cytosol is the expected primary localization for Hsp90.
|
|
GO:0050821
protein stabilization
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HSC82 stabilizes client proteins as part of its chaperone function. IBA annotation is appropriate.
Reason: Protein stabilization is a core function of Hsp90. UniProt describes the role of HSC82 in stabilizing calcineurin (CNA2) under salt stress (PMID:11094077).
|
|
GO:0034605
cellular response to heat
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Although HSC82 is the constitutive isoform, it is still involved in heat stress response.
Reason: IMP evidence from PMID:2674684 confirms that both HSP82 and HSC82 are required for growth at elevated temperatures. While HSC82 is constitutively expressed, it still contributes to thermal tolerance.
|
|
GO:0051082
unfolded protein binding
|
IBA
GO_REF:0000033 |
MODIFY |
Summary: GO:0051082 is proposed for obsoletion. HSC82 does interact with unfolded/misfolded client proteins but its mechanism is better captured by GO:0140662 (ATP-dependent protein folding chaperone).
Reason: GO:0051082 is proposed for obsoletion. HSC82 is an ATP-dependent foldase; while it does bind unfolded/non-native proteins as part of its chaperone cycle, the binding is coupled to ATP-driven conformational changes. The more appropriate term is GO:0140662 "ATP-dependent protein folding chaperone" which captures both the binding and the active folding mechanism. IDA evidence from PMID:9465043 demonstrated binding to denatured substrates, but this is part of the broader chaperone activity.
Proposed replacements:
ATP-dependent protein folding chaperone
|
|
GO:0048471
perinuclear region of cytoplasm
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: IBA annotation for perinuclear localization. HSC82 is primarily cytoplasmic; perinuclear enrichment is inferred from ortholog data.
Reason: HSC82 is found in the cytoplasm. Perinuclear localization is inferred from orthologs and may represent a minor pool. Not a primary localization.
|
|
GO:0000166
nucleotide binding
|
IEA
GO_REF:0000043 |
ACCEPT |
Summary: IEA annotation from UniProt keyword mapping. Broader than ATP binding but not incorrect.
Reason: Nucleotide binding is a parent term of ATP binding. While more specific IBA and IEA annotations for ATP binding exist, this broader IEA annotation is not incorrect.
|
|
GO:0000492
box C/D snoRNP assembly
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: ARBA machine learning prediction for snoRNP assembly involvement. Supported by IMP evidence.
Reason: Supported by IMP evidence (PMID:18268103) which showed Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex activity that regulates snoRNA accumulation. This is a legitimate but secondary function of Hsp90.
|
|
GO:0005524
ATP binding
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: IEA annotation for ATP binding. Consistent with IBA and experimental evidence.
Reason: Redundant with IBA annotation but correct. ATP binding is a core molecular function of HSC82.
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: IEA annotation for cytoplasm from UniProt subcellular location mapping. Correct.
Reason: Consistent with HDA evidence for cytoplasmic localization (PMID:14562095).
|
|
GO:0005739
mitochondrion
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: IEA annotation for mitochondrial localization from UniProt. Supported by HDA evidence.
Reason: HSC82 has been detected in mitochondrial proteome studies (PMID:14576278, PMID:16823961). This is likely a minor pool; the primary localization is cytoplasmic. Not a core localization.
|
|
GO:0006457
protein folding
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: IEA annotation for protein folding. Redundant with IBA but correct.
Reason: Consistent with IBA and experimental annotations for protein folding involvement.
|
|
GO:0016887
ATP hydrolysis activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: IEA annotation for ATP hydrolysis activity. Redundant with IBA and IDA but correct.
Reason: Consistent with IBA and IDA (PMID:18492664) annotations for ATPase activity.
|
|
GO:0043248
proteasome assembly
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: ARBA prediction for proteasome assembly involvement. Supported by IMP evidence.
Reason: Supported by IMP evidence (PMID:12853471). Hsp90 assists in proteasome assembly as one of its client-dependent functions. Not a core function of HSC82 per se.
|
|
GO:0051082
unfolded protein binding
|
IEA
GO_REF:0000120 |
MODIFY |
Summary: IEA annotation for unfolded protein binding. Same issue as IBA annotation - term proposed for obsoletion.
Reason: GO:0051082 is proposed for obsoletion. Should be replaced with GO:0140662 "ATP-dependent protein folding chaperone" which better captures the active chaperone mechanism.
Proposed replacements:
ATP-dependent protein folding chaperone
|
|
GO:0140662
ATP-dependent protein folding chaperone
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA annotation from InterPro for ATP-dependent protein folding chaperone. This is the correct and most informative molecular function term for HSC82.
Reason: GO:0140662 is the ideal molecular function term for HSC82/Hsp90. It captures both the ATP dependence and the protein folding chaperone activity. This should be considered the primary MF annotation for HSC82.
|
|
GO:0005515
protein binding
|
IPI
PMID:11805826 Functional organization of the yeast proteome by systematic ... |
MARK AS OVER ANNOTATED |
Summary: IPI from large-scale protein complex study. Uninformative "protein binding" annotation.
Reason: "Protein binding" is uninformative for a molecular chaperone that by definition binds many proteins. The more informative annotation is GO:0140662 (ATP-dependent protein folding chaperone).
|
|
GO:0005515
protein binding
|
IPI
PMID:11805837 Systematic identification of protein complexes in Saccharomy... |
MARK AS OVER ANNOTATED |
Summary: IPI from mass spectrometry study. Uninformative "protein binding" annotation.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:15699485 Analysis of polyubiquitin conjugates reveals that the Rpn10 ... |
MARK AS OVER ANNOTATED |
Summary: IPI from polyubiquitin conjugate study.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:15766533 Navigating the chaperone network: an integrative map of phys... |
MARK AS OVER ANNOTATED |
Summary: IPI from large-scale chaperone network study (Zhao et al 2005).
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:16429126 Proteome survey reveals modularity of the yeast cell machine... |
MARK AS OVER ANNOTATED |
Summary: IPI from proteome survey.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:16554755 Global landscape of protein complexes in the yeast Saccharom... |
MARK AS OVER ANNOTATED |
Summary: IPI from large-scale protein complex study (Krogan et al 2006).
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:18719252 High-quality binary protein interaction map of the yeast int... |
MARK AS OVER ANNOTATED |
Summary: IPI from high-quality binary interaction map.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:19536198 An atlas of chaperone-protein interactions in Saccharomyces ... |
MARK AS OVER ANNOTATED |
Summary: IPI from atlas of chaperone-protein interactions.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:21734642 Combinatorial depletion analysis to assemble the network arc... |
MARK AS OVER ANNOTATED |
Summary: IPI from SAGA/ADA complex study.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:23217712 CDK-dependent Hsp70 Phosphorylation controls G1 cyclin abund... |
MARK AS OVER ANNOTATED |
Summary: IPI from CDK-dependent Hsp70 phosphorylation study.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:25073740 Molecular architecture and function of the SEA complex, a mo... |
MARK AS OVER ANNOTATED |
Summary: IPI from protein interaction study.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:31454312 The role of structural pleiotropy and regulatory evolution i... |
MARK AS OVER ANNOTATED |
Summary: IPI from structural pleiotropy study of Hsp90 paralogs. Documents HSP82-HSC82 heterodimerization.
Reason: While the HSP82-HSC82 heterodimerization is biologically interesting, "protein binding" is uninformative. The heterodimerization could be captured by GO:0042802 (identical protein binding) or a more specific term.
|
|
GO:0005515
protein binding
|
IPI
PMID:37070168 RNA-dependent interactome allows network-based assignment of... |
MARK AS OVER ANNOTATED |
Summary: IPI from RNA-dependent interactome study.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:37968396 The social and structural architecture of the yeast protein ... |
MARK AS OVER ANNOTATED |
Summary: IPI from yeast protein interactome architecture study.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0005515
protein binding
|
IPI
PMID:9819421 CNS1 encodes an essential p60/Sti1 homolog in Saccharomyces ... |
MARK AS OVER ANNOTATED |
Summary: IPI from Cns1/Hsp90 interaction study.
Reason: Uninformative "protein binding" for a chaperone.
|
|
GO:0070482
response to oxygen levels
|
NAS
PMID:9632766 Molecular mechanism governing heme signaling in yeast: a hig... |
KEEP AS NON CORE |
Summary: NAS annotation based on HSC82 involvement in HAP1-mediated heme signaling.
Reason: HSC82 (like HSP82) forms a complex with HAP1, a transcriptional activator regulated by heme (proxy for oxygen). This is a client-dependent function. The NAS evidence is weak but the underlying biology is plausible.
|
|
GO:0005737
cytoplasm
|
HDA
PMID:14562095 Global analysis of protein localization in budding yeast. |
ACCEPT |
Summary: High-throughput GFP localization data confirming cytoplasm.
Reason: Global protein localization study. Core localization of HSC82.
|
|
GO:0005739
mitochondrion
|
HDA
PMID:14576278 The proteome of Saccharomyces cerevisiae mitochondria. |
KEEP AS NON CORE |
Summary: HDA for mitochondrial localization from mitochondrial proteome study.
Reason: HSC82 was detected in the yeast mitochondrial proteome, suggesting a minor mitochondrial pool. Not a primary localization.
|
|
GO:0005739
mitochondrion
|
HDA
PMID:16823961 Toward the complete yeast mitochondrial proteome: multidimen... |
KEEP AS NON CORE |
Summary: Additional HDA for mitochondrial localization from mitochondrial proteomics.
Reason: Consistent with PMID:14576278 for a minor mitochondrial pool. Not a core localization.
|
|
GO:0005886
plasma membrane
|
HDA
PMID:16622836 The plasma membrane proteome of Saccharomyces cerevisiae and... |
KEEP AS NON CORE |
Summary: HDA for plasma membrane localization from plasma membrane proteomics study.
Reason: HSC82 was detected in the plasma membrane proteome, suggesting a minor membrane-associated pool. Not a primary localization.
|
|
GO:0034605
cellular response to heat
|
IMP
PMID:2674684 hsp82 is an essential protein that is required in higher con... |
ACCEPT |
Summary: IMP evidence showing that Hsp90 is essential for growth at elevated temperatures.
Reason: Study demonstrated that both HSP82 and HSC82 are required for growth at high temperatures. HSC82 is constitutively expressed but still contributes to heat stress tolerance.
|
|
GO:0000492
box C/D snoRNP assembly
|
IMP
PMID:18268103 Molecular chaperone Hsp90 stabilizes Pih1/Nop17 to maintain ... |
KEEP AS NON CORE |
Summary: IMP evidence showing Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex for snoRNP assembly.
Reason: Hsp90 acts on the R2TP pathway components (Pih1, Tah1) that are required for snoRNP assembly. Client-dependent function, not core.
|
|
GO:0000723
telomere maintenance
|
IMP
PMID:17954556 The hsp90 molecular chaperone modulates multiple telomerase ... |
KEEP AS NON CORE |
Summary: IMP evidence showing Hsp90 modulates telomerase activities.
Reason: Hsp90 chaperones telomerase components. This is a client-dependent function, not a core function of HSC82 itself.
|
|
GO:0006457
protein folding
|
IMP
PMID:7791797 Mutational analysis of Hsp90 function: interactions with a s... |
ACCEPT |
Summary: IMP evidence for protein folding from early characterization study.
Reason: Core biological process for HSC82/Hsp90. Directly demonstrates the role in protein folding.
|
|
GO:0016887
ATP hydrolysis activity
|
IDA
PMID:18492664 Intra- and intermonomer interactions are required to synergi... |
ACCEPT |
Summary: Direct assay evidence for ATPase activity of HSC82. Intra- and intermonomer interactions are required for ATP hydrolysis.
Reason: Core molecular function. Direct biochemical measurement of ATPase activity showing that both intra- and intermonomer interactions synergistically facilitate ATP hydrolysis.
|
|
GO:0043248
proteasome assembly
|
IMP
PMID:12853471 The molecular chaperone Hsp90 plays a role in the assembly a... |
KEEP AS NON CORE |
Summary: IMP evidence for proteasome assembly involvement.
Reason: HSC82 assists in proteasome assembly as a client-dependent function. Secondary to core chaperone activity.
|
|
GO:0051082
unfolded protein binding
|
IDA
PMID:9465043 Two chaperone sites in Hsp90 differing in substrate specific... |
MODIFY |
Summary: IDA evidence for unfolded protein binding. Term proposed for obsoletion.
Reason: While the experimental evidence is solid (HSC82 does bind unfolded proteins), GO:0051082 is proposed for obsoletion. The binding of unfolded proteins is part of the ATP-dependent chaperone mechanism, better captured by GO:0140662 "ATP-dependent protein folding chaperone."
Proposed replacements:
ATP-dependent protein folding chaperone
|
id: P15108
gene_symbol: HSC82
product_type: PROTEIN
status: IN_PROGRESS
taxon:
id: NCBITaxon:559292
label: Saccharomyces cerevisiae
description: >-
HSC82 is the constitutive (cognate) isoform of Hsp90 in S. cerevisiae. It is an ATP-dependent molecular
chaperone that promotes the maturation, structural maintenance, and proper regulation of specific client
proteins, particularly those involved in cell cycle control and signal transduction. HSC82 functions as a
homodimer (and can heterodimerize with HSP82), undergoing an ATP-dependent conformational cycle that acts
as a molecular clamp on client proteins. It interacts with the same network of co-chaperones as HSP82
(STI1, AHA1, CDC37, SBA1, CPR6, CPR7, CNS1, SSE1, HCH1). HSC82 is expressed constitutively and accounts
for the majority of Hsp90 protein under non-stress conditions.
existing_annotations:
# ============================================================================
# IBA ANNOTATIONS
# ============================================================================
- term:
id: GO:0006457
label: protein folding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
HSC82/Hsp90 is a well-established protein folding chaperone. IBA annotation is consistent with the
known function of this conserved chaperone family across eukaryotes.
action: ACCEPT
reason: >-
Protein folding is a core biological process for Hsp90. UniProt describes HSC82 as an "ATP-dependent
molecular chaperone" that promotes maturation and regulation of client proteins. IMP evidence from
PMID:7791797 confirms involvement in protein folding.
- term:
id: GO:0016887
label: ATP hydrolysis activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
HSC82 has well-characterized ATPase activity essential for its chaperone cycle. IBA annotation is correct.
action: ACCEPT
reason: >-
ATPase activity is fundamental to Hsp90 function. Directly demonstrated by IDA (PMID:18492664).
UniProt documents the ATP binding and hydrolysis mechanism.
- term:
id: GO:0032991
label: protein-containing complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
HSC82 functions as a homodimer and forms complexes with many co-chaperones and client proteins.
action: ACCEPT
reason: >-
HSC82 is a homodimer and forms well-characterized complexes with co-chaperones (STI1, AHA1, SBA1,
CDC37, CPR6, CPR7, CNS1, SSE1). Also heterodimerizes with HSP82 (PMID:31454312).
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
IBA annotation for plasma membrane localization. HSC82 is primarily cytoplasmic but plasma membrane
association has some HDA support (PMID:16622836).
action: KEEP_AS_NON_CORE
reason: >-
HSC82 is primarily cytoplasmic. Plasma membrane localization is supported by HDA from PMID:16622836
(plasma membrane proteome study) but is not a core localization. A minor membrane-associated pool
is plausible.
- term:
id: GO:0005524
label: ATP binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
HSC82 binds ATP as part of its chaperone cycle. Well-established by crystallography of Hsp90 orthologs.
action: ACCEPT
reason: >-
ATP binding is essential for Hsp90 function. The N-terminal domain contains the Bergerat ATP-binding
fold. UniProt documents the ATP binding site residues.
- term:
id: GO:0005829
label: cytosol
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
HSC82 is a cytosolic protein. IBA annotation is correct.
action: ACCEPT
reason: >-
Consistent with HDA evidence for cytoplasm localization (PMID:14562095). Cytosol is the expected
primary localization for Hsp90.
- term:
id: GO:0050821
label: protein stabilization
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
HSC82 stabilizes client proteins as part of its chaperone function. IBA annotation is appropriate.
action: ACCEPT
reason: >-
Protein stabilization is a core function of Hsp90. UniProt describes the role of HSC82 in stabilizing
calcineurin (CNA2) under salt stress (PMID:11094077).
- term:
id: GO:0034605
label: cellular response to heat
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
Although HSC82 is the constitutive isoform, it is still involved in heat stress response.
action: ACCEPT
reason: >-
IMP evidence from PMID:2674684 confirms that both HSP82 and HSC82 are required for growth at
elevated temperatures. While HSC82 is constitutively expressed, it still contributes to
thermal tolerance.
- term:
id: GO:0051082
label: unfolded protein binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
GO:0051082 is proposed for obsoletion. HSC82 does interact with unfolded/misfolded client proteins
but its mechanism is better captured by GO:0140662 (ATP-dependent protein folding chaperone).
action: MODIFY
reason: >-
GO:0051082 is proposed for obsoletion. HSC82 is an ATP-dependent foldase; while it does bind
unfolded/non-native proteins as part of its chaperone cycle, the binding is coupled to ATP-driven
conformational changes. The more appropriate term is GO:0140662 "ATP-dependent protein folding
chaperone" which captures both the binding and the active folding mechanism. IDA evidence
from PMID:9465043 demonstrated binding to denatured substrates, but this is part of the broader
chaperone activity.
proposed_replacement_terms:
- id: GO:0140662
label: ATP-dependent protein folding chaperone
- term:
id: GO:0048471
label: perinuclear region of cytoplasm
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: >-
IBA annotation for perinuclear localization. HSC82 is primarily cytoplasmic; perinuclear
enrichment is inferred from ortholog data.
action: KEEP_AS_NON_CORE
reason: >-
HSC82 is found in the cytoplasm. Perinuclear localization is inferred from orthologs and may
represent a minor pool. Not a primary localization.
# ============================================================================
# IEA ANNOTATIONS
# ============================================================================
- term:
id: GO:0000166
label: nucleotide binding
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: >-
IEA annotation from UniProt keyword mapping. Broader than ATP binding but not incorrect.
action: ACCEPT
reason: >-
Nucleotide binding is a parent term of ATP binding. While more specific IBA and IEA annotations
for ATP binding exist, this broader IEA annotation is not incorrect.
- term:
id: GO:0000492
label: box C/D snoRNP assembly
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: >-
ARBA machine learning prediction for snoRNP assembly involvement. Supported by IMP evidence.
action: KEEP_AS_NON_CORE
reason: >-
Supported by IMP evidence (PMID:18268103) which showed Hsp90 stabilizes Pih1/Nop17 to maintain
R2TP complex activity that regulates snoRNA accumulation. This is a legitimate but secondary
function of Hsp90.
- term:
id: GO:0005524
label: ATP binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
IEA annotation for ATP binding. Consistent with IBA and experimental evidence.
action: ACCEPT
reason: >-
Redundant with IBA annotation but correct. ATP binding is a core molecular function of HSC82.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
IEA annotation for cytoplasm from UniProt subcellular location mapping. Correct.
action: ACCEPT
reason: >-
Consistent with HDA evidence for cytoplasmic localization (PMID:14562095).
- term:
id: GO:0005739
label: mitochondrion
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: >-
IEA annotation for mitochondrial localization from UniProt. Supported by HDA evidence.
action: KEEP_AS_NON_CORE
reason: >-
HSC82 has been detected in mitochondrial proteome studies (PMID:14576278, PMID:16823961). This is
likely a minor pool; the primary localization is cytoplasmic. Not a core localization.
- term:
id: GO:0006457
label: protein folding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
IEA annotation for protein folding. Redundant with IBA but correct.
action: ACCEPT
reason: >-
Consistent with IBA and experimental annotations for protein folding involvement.
- term:
id: GO:0016887
label: ATP hydrolysis activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
IEA annotation for ATP hydrolysis activity. Redundant with IBA and IDA but correct.
action: ACCEPT
reason: >-
Consistent with IBA and IDA (PMID:18492664) annotations for ATPase activity.
- term:
id: GO:0043248
label: proteasome assembly
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: >-
ARBA prediction for proteasome assembly involvement. Supported by IMP evidence.
action: KEEP_AS_NON_CORE
reason: >-
Supported by IMP evidence (PMID:12853471). Hsp90 assists in proteasome assembly as one of
its client-dependent functions. Not a core function of HSC82 per se.
- term:
id: GO:0051082
label: unfolded protein binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: >-
IEA annotation for unfolded protein binding. Same issue as IBA annotation - term proposed for obsoletion.
action: MODIFY
reason: >-
GO:0051082 is proposed for obsoletion. Should be replaced with GO:0140662 "ATP-dependent
protein folding chaperone" which better captures the active chaperone mechanism.
proposed_replacement_terms:
- id: GO:0140662
label: ATP-dependent protein folding chaperone
- term:
id: GO:0140662
label: ATP-dependent protein folding chaperone
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: >-
IEA annotation from InterPro for ATP-dependent protein folding chaperone. This is the correct
and most informative molecular function term for HSC82.
action: ACCEPT
reason: >-
GO:0140662 is the ideal molecular function term for HSC82/Hsp90. It captures both the ATP
dependence and the protein folding chaperone activity. This should be considered the primary
MF annotation for HSC82.
# ============================================================================
# IPI PROTEIN BINDING ANNOTATIONS
# ============================================================================
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11805826
review:
summary: >-
IPI from large-scale protein complex study. Uninformative "protein binding" annotation.
action: MARK_AS_OVER_ANNOTATED
reason: >-
"Protein binding" is uninformative for a molecular chaperone that by definition binds many
proteins. The more informative annotation is GO:0140662 (ATP-dependent protein folding chaperone).
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11805837
review:
summary: >-
IPI from mass spectrometry study. Uninformative "protein binding" annotation.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15699485
review:
summary: >-
IPI from polyubiquitin conjugate study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15766533
review:
summary: >-
IPI from large-scale chaperone network study (Zhao et al 2005).
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16429126
review:
summary: >-
IPI from proteome survey.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16554755
review:
summary: >-
IPI from large-scale protein complex study (Krogan et al 2006).
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18719252
review:
summary: >-
IPI from high-quality binary interaction map.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19536198
review:
summary: >-
IPI from atlas of chaperone-protein interactions.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21734642
review:
summary: >-
IPI from SAGA/ADA complex study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23217712
review:
summary: >-
IPI from CDK-dependent Hsp70 phosphorylation study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25073740
review:
summary: >-
IPI from protein interaction study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31454312
review:
summary: >-
IPI from structural pleiotropy study of Hsp90 paralogs. Documents HSP82-HSC82 heterodimerization.
action: MARK_AS_OVER_ANNOTATED
reason: >-
While the HSP82-HSC82 heterodimerization is biologically interesting, "protein binding"
is uninformative. The heterodimerization could be captured by GO:0042802 (identical protein binding)
or a more specific term.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:37070168
review:
summary: >-
IPI from RNA-dependent interactome study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:37968396
review:
summary: >-
IPI from yeast protein interactome architecture study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9819421
review:
summary: >-
IPI from Cns1/Hsp90 interaction study.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative "protein binding" for a chaperone.
# ============================================================================
# OTHER EXPERIMENTAL ANNOTATIONS
# ============================================================================
- term:
id: GO:0070482
label: response to oxygen levels
evidence_type: NAS
original_reference_id: PMID:9632766
review:
summary: >-
NAS annotation based on HSC82 involvement in HAP1-mediated heme signaling.
action: KEEP_AS_NON_CORE
reason: >-
HSC82 (like HSP82) forms a complex with HAP1, a transcriptional activator regulated by heme
(proxy for oxygen). This is a client-dependent function. The NAS evidence is weak but the
underlying biology is plausible.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: HDA
original_reference_id: PMID:14562095
review:
summary: >-
High-throughput GFP localization data confirming cytoplasm.
action: ACCEPT
reason: >-
Global protein localization study. Core localization of HSC82.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: HDA
original_reference_id: PMID:14576278
review:
summary: >-
HDA for mitochondrial localization from mitochondrial proteome study.
action: KEEP_AS_NON_CORE
reason: >-
HSC82 was detected in the yeast mitochondrial proteome, suggesting a minor mitochondrial pool.
Not a primary localization.
- term:
id: GO:0005739
label: mitochondrion
evidence_type: HDA
original_reference_id: PMID:16823961
review:
summary: >-
Additional HDA for mitochondrial localization from mitochondrial proteomics.
action: KEEP_AS_NON_CORE
reason: >-
Consistent with PMID:14576278 for a minor mitochondrial pool. Not a core localization.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: HDA
original_reference_id: PMID:16622836
review:
summary: >-
HDA for plasma membrane localization from plasma membrane proteomics study.
action: KEEP_AS_NON_CORE
reason: >-
HSC82 was detected in the plasma membrane proteome, suggesting a minor membrane-associated pool.
Not a primary localization.
- term:
id: GO:0034605
label: cellular response to heat
evidence_type: IMP
original_reference_id: PMID:2674684
review:
summary: >-
IMP evidence showing that Hsp90 is essential for growth at elevated temperatures.
action: ACCEPT
reason: >-
Study demonstrated that both HSP82 and HSC82 are required for growth at high temperatures.
HSC82 is constitutively expressed but still contributes to heat stress tolerance.
- term:
id: GO:0000492
label: box C/D snoRNP assembly
evidence_type: IMP
original_reference_id: PMID:18268103
review:
summary: >-
IMP evidence showing Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex for snoRNP assembly.
action: KEEP_AS_NON_CORE
reason: >-
Hsp90 acts on the R2TP pathway components (Pih1, Tah1) that are required for snoRNP assembly.
Client-dependent function, not core.
- term:
id: GO:0000723
label: telomere maintenance
evidence_type: IMP
original_reference_id: PMID:17954556
review:
summary: >-
IMP evidence showing Hsp90 modulates telomerase activities.
action: KEEP_AS_NON_CORE
reason: >-
Hsp90 chaperones telomerase components. This is a client-dependent function, not a core
function of HSC82 itself.
- term:
id: GO:0006457
label: protein folding
evidence_type: IMP
original_reference_id: PMID:7791797
review:
summary: >-
IMP evidence for protein folding from early characterization study.
action: ACCEPT
reason: >-
Core biological process for HSC82/Hsp90. Directly demonstrates the role in protein folding.
- term:
id: GO:0016887
label: ATP hydrolysis activity
evidence_type: IDA
original_reference_id: PMID:18492664
review:
summary: >-
Direct assay evidence for ATPase activity of HSC82. Intra- and intermonomer interactions
are required for ATP hydrolysis.
action: ACCEPT
reason: >-
Core molecular function. Direct biochemical measurement of ATPase activity showing that both
intra- and intermonomer interactions synergistically facilitate ATP hydrolysis.
- term:
id: GO:0043248
label: proteasome assembly
evidence_type: IMP
original_reference_id: PMID:12853471
review:
summary: >-
IMP evidence for proteasome assembly involvement.
action: KEEP_AS_NON_CORE
reason: >-
HSC82 assists in proteasome assembly as a client-dependent function. Secondary to core
chaperone activity.
- term:
id: GO:0051082
label: unfolded protein binding
evidence_type: IDA
original_reference_id: PMID:9465043
review:
summary: >-
IDA evidence for unfolded protein binding. Term proposed for obsoletion.
action: MODIFY
reason: >-
While the experimental evidence is solid (HSC82 does bind unfolded proteins), GO:0051082
is proposed for obsoletion. The binding of unfolded proteins is part of the ATP-dependent
chaperone mechanism, better captured by GO:0140662 "ATP-dependent protein folding chaperone."
proposed_replacement_terms:
- id: GO:0140662
label: ATP-dependent protein folding chaperone
core_functions:
- description: >-
Primary molecular function: ATP-dependent protein folding chaperone. HSC82 binds to
client proteins and assists their folding through an ATP-dependent conformational cycle.
Supported by IEA from InterPro, IDA evidence for ATP hydrolysis (PMID:18492664), and
IDA evidence for unfolded protein binding (PMID:9465043).
molecular_function:
id: GO:0140662
label: ATP-dependent protein folding chaperone
directly_involved_in:
- id: GO:0006457
label: protein folding
- id: GO:0034605
label: cellular response to heat
locations:
- id: GO:0005737
label: cytoplasm
- description: >-
ATPase activity is fundamental to the Hsp90 chaperone cycle. Directly demonstrated by
IDA (PMID:18492664). Intra- and intermonomer interactions synergistically facilitate
ATP hydrolysis.
molecular_function:
id: GO:0016887
label: ATP hydrolysis activity
directly_involved_in:
- id: GO:0006457
label: protein folding
locations:
- id: GO:0005737
label: cytoplasm
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:11805826
title: Functional organization of the yeast proteome by systematic analysis of protein
complexes.
findings: []
- id: PMID:11805837
title: Systematic identification of protein complexes in Saccharomyces cerevisiae
by mass spectrometry.
findings: []
- id: PMID:12853471
title: The molecular chaperone Hsp90 plays a role in the assembly and maintenance of the 26S proteasome.
findings: []
- id: PMID:14562095
title: Global analysis of protein localization in budding yeast.
findings: []
- id: PMID:14576278
title: The proteome of Saccharomyces cerevisiae mitochondria.
findings: []
- id: PMID:15699485
title: Analysis of polyubiquitin conjugates reveals that the Rpn10 substrate receptor
contributes to the turnover of multiple proteasome targets.
findings: []
- id: PMID:15766533
title: 'Navigating the chaperone network: an integrative map of physical and genetic
interactions mediated by the hsp90 chaperone.'
findings: []
- id: PMID:16429126
title: Proteome survey reveals modularity of the yeast cell machinery.
findings: []
- id: PMID:16554755
title: Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.
findings: []
- id: PMID:16622836
title: The plasma membrane proteome of Saccharomyces cerevisiae and its response
to the antifungal calcofluor.
findings: []
- id: PMID:16823961
title: 'Toward the complete yeast mitochondrial proteome: multidimensional separation
techniques for mitochondrial proteomics.'
findings: []
- id: PMID:17954556
title: The hsp90 molecular chaperone modulates multiple telomerase activities.
findings: []
- id: PMID:18268103
title: Molecular chaperone Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex
activity that regulates snoRNA accumulation.
findings: []
- id: PMID:18492664
title: Intra- and intermonomer interactions are required to synergistically facilitate
ATP hydrolysis in Hsp90.
findings:
- statement: Direct biochemical measurement of ATPase activity showing intra- and intermonomer cooperation
- id: PMID:18719252
title: High-quality binary protein interaction map of the yeast interactome network.
findings: []
- id: PMID:19536198
title: 'An atlas of chaperone-protein interactions in Saccharomyces cerevisiae:
implications to protein folding pathways in the cell.'
findings: []
- id: PMID:21734642
title: Combinatorial depletion analysis to assemble the network architecture of
the SAGA and ADA chromatin remodeling complexes.
findings: []
- id: PMID:23217712
title: CDK-dependent Hsp70 Phosphorylation controls G1 cyclin abundance and cell-cycle
progression.
findings: []
- id: PMID:25073740
title: Molecular architecture and function of the SEA complex, a modulator of the TORC1 pathway.
findings: []
- id: PMID:2674684
title: hsp82 is an essential protein that is required in higher concentrations for
growth of cells at higher temperatures.
findings:
- statement: Both HSP82 and HSC82 are required for growth at elevated temperatures
- id: PMID:31454312
title: The role of structural pleiotropy and regulatory evolution in the retention
of heteromers of paralogs.
findings: []
- id: PMID:37070168
title: RNA-dependent interactome allows network-based assignment of RNA-binding
protein function.
findings: []
- id: PMID:37968396
title: The social and structural architecture of the yeast protein interactome.
findings: []
- id: PMID:7791797
title: 'Mutational analysis of Hsp90 function: interactions with a steroid receptor and a protein kinase.'
findings:
- statement: Hsp90 is required for protein folding in vivo
- id: PMID:9465043
title: Two chaperone sites in Hsp90 differing in substrate specificity and ATP dependence.
findings:
- statement: HSC82 binds unfolded proteins
- id: PMID:9632766
title: 'Molecular mechanism governing heme signaling in yeast: a higher-order complex
mediates heme regulation of the transcriptional activator HAP1.'
findings: []
- id: PMID:9819421
title: CNS1 encodes an essential p60/Sti1 homolog in Saccharomyces cerevisiae that
suppresses cyclophilin 40 mutations and interacts with Hsp90.
findings: []
- id: PMID:11094077
title: Role of HSP90 in salt stress tolerance via stabilization and regulation of calcineurin.
findings:
- statement: HSC82 stabilizes and regulates calcineurin (CNA2) under salt stress conditions