NAD-dependent protein deacetylase HST2, a sirtuin family member (Class I sirtuin). HST2 is primarily cytoplasmic but shuttles between nucleus and cytoplasm via the CRM1 exportin. It catalyzes NAD-dependent deacetylation of lysine residues on histone and non-histone proteins, with strong preference for histone H4K16. Key roles include modulation of nuclear silencing events (rDNA heterochromatin formation and negative regulation of subtelomeric position effect), DNA stability maintenance, and lifespan extension under calorie restriction. Functionally distinct from SIR2 in substrate specificity and localization-dependent regulation.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005634
nucleus
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HST2 localizes to both nucleus and cytoplasm, with dynamic shuttling between compartments. IBA annotation is appropriate despite HST2 being primarily cytoplasmic.
Reason: HST2 exhibits documented nuclear localization and performs transcriptional repression functions in the nucleus, enabling both telomeric and rDNA silencing activities. Nuclear localization is physiologically relevant despite efficient nuclear export that results in predominantly cytoplasmic steady-state distribution.
Supporting Evidence:
PMID:17110954
Hst2 moves between the nucleus and cytoplasm, but is largely cytoplasmic owing to efficient nuclear export. This nuclear exclusion is mediated by the exportin chromosomal region maintenance 1 (Crm1) and a putative leucine-rich nuclear export sequence in Hst2
PMID:11226170
Although yHst2p cannot restore silencing in a sir2 deletion, overexpression of yHst2p influences nuclear silencing events in a SIR2 strain, derepressing subtelomeric silencing while increasing repression in the rDNA
|
|
GO:0017136
histone deacetylase activity, NAD-dependent
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HST2 is a canonical member of the sirtuin family with core NAD-dependent histone deacetylase activity, phylogenetically conserved across kingdoms.
Reason: HST2 catalyzes NAD-dependent deacetylation of acetylated lysines on histones and other proteins, representing a primary and well-established molecular function. The IBA annotation is justified through phylogenetic inference from characterized sirtuin orthologs in other organisms.
Supporting Evidence:
PMID:10811920
members of the SIR2 family catalyze an NAD-nicotinamide exchange reaction that requires the presence of acetylated lysines such as those found in the N termini of histones. Significantly, these enzymes also catalyze histone deacetylation in a reaction that absolutely requires NAD
PMID:11226170
In budding yeast, the silent information regulator Sir2p is a nuclear NAD-dependent deacetylase... All eukaryotic species examined to date have multiple homologues of Sir two (HSTs), which share a highly conserved globular core domain
|
|
GO:0000183
rDNA heterochromatin formation
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: HST2 actively increases repression at the rDNA locus (nucleolar silencing), a core functional role well-documented in experimental literature.
Reason: HST2 overexpression results in increased repression of rDNA heterochromatin formation, particularly promoting DNA stability in repetitive ribosomal DNA sequences. This is a key biological process function that HST2 performs through its deacetylase activity on histones in the rDNA locus.
Supporting Evidence:
PMID:11226170
overexpression of yHst2p influences nuclear silencing events in a SIR2 strain, derepressing subtelomeric silencing while increasing repression in the rDNA
PMID:16051752
Sir2-independent life-span extension is mediated by Hst2, a Sir2 homolog that promotes the stability of repetitive ribosomal DNA, the same mechanism by which Sir2 extends life span
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: IEA annotation based on UniProtKB subcellular location vocabulary mapping. Redundant with IBA and IDA annotations for nucleus localization.
Reason: While based on automated mapping from UniProtKB, this annotation is correct. HST2 does localize to the nucleus, and UniProt correctly lists nucleus as a subcellular location. This is a conservative IEA assignment that aligns with experimental evidence.
Supporting Evidence:
GO_REF:0000044
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: IEA annotation based on UniProtKB subcellular location vocabulary. HST2 is primarily and predominantly cytoplasmic under normal growth conditions.
Reason: HST2 is correctly annotated as cytoplasmic. The UniProtKB annotation notes that HST2 shuttles between nucleus and cytoplasm but is largely cytoplasmic due to efficient nuclear export mediated by CRM1. This is the predominant steady-state localization.
Supporting Evidence:
GO_REF:0000044
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
|
|
GO:0006351
DNA-templated transcription
|
IEA
GO_REF:0000043 |
MODIFY |
Summary: IEA annotation based on UniProtKB keyword "Transcription" mapping. HST2 affects transcription through histone deacetylation and chromatin remodeling.
Reason: While HST2 influences transcriptional outcomes through its deacetylase activity on histones, particularly affecting silencing at telomeric and rDNA loci, it is more accurate to annotate this as negative regulation of transcription or regulation of transcription rather than the direct process of DNA-templated transcription. HST2 does not catalyze transcription itself but modifies chromatin structure to suppress transcription.
Proposed replacements:
DNA-templated transcription repression
negative regulation of DNA-templated transcription
Supporting Evidence:
PMID:17110954
Nuclear export modulates the cytoplasmic Sir2 homologue Hst2.
|
|
GO:0016740
transferase activity
|
IEA
GO_REF:0000043 |
MARK AS OVER ANNOTATED |
Summary: IEA annotation based on UniProtKB keyword mapping. Technically, sirtuins catalyze an ADP-ribosyl transfer reaction as part of their deacetylation mechanism.
Reason: While sirtuins do generate ADP-ribose during their catalytic cycle, the primary annotated activity is deacetylation (hydrolysis), not transferase activity per se. The EC number (2.3.1.286) assigned to HST2 suggests hydrolase classification. More specific molecular function terms already capture HST2's enzymatic activities (GO:0017136, GO:0046970, GO:0034979). This annotation is technically correct but too general and less informative than the specific deacetylase terms.
Supporting Evidence:
GO_REF:0000043
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
|
|
GO:0017136
histone deacetylase activity, NAD-dependent
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: IEA annotation from Combined Automated Annotation using InterPro protein signature mapping. Correct annotation of core HST2 molecular function.
Reason: Redundant with IBA and IDA annotations but correct. InterPro IPR017328 (Sirtuin class I domain) appropriately maps to GO:0017136. Multiple evidence types confirming the same annotation strengthen confidence in this core molecular function.
Supporting Evidence:
GO_REF:0000120
Combined Automated Annotation using Multiple IEA Methods
|
|
GO:0031507
heterochromatin formation
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: IEA annotation from ARBA machine learning model. HST2 does participate in heterochromatin formation through its deacetylase activity.
Reason: HST2's demonstrated activity in promoting rDNA heterochromatin formation supports this broader heterochromatin formation annotation. The ARBA model inference is reasonable and consistent with experimental evidence showing HST2's role in nucleolar silencing and chromatin compaction.
Supporting Evidence:
PMID:11226170
Although yHst2p cannot restore silencing in a sir2 deletion, overexpression of yHst2p influences nuclear silencing events in a SIR2 strain, derepressing subtelomeric silencing while increasing repression in the rDNA
|
|
GO:0034979
NAD-dependent protein lysine deacetylase activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: IEA annotation from InterPro and RHEA mapping. This is a more general parent term encompassing both histone and non-histone protein deacetylation.
Reason: HST2 catalyzes NAD-dependent deacetylation of lysine residues on both histone and non-histone substrates. This parent term appropriately captures the broader specificity of HST2's deacetylase activity beyond just histones. RHEA:43636 correctly represents the NAD-dependent deacetylation reaction catalyzed by sirtuins.
Supporting Evidence:
GO_REF:0000120
Combined Automated Annotation using Multiple IEA Methods with RHEA:43636
|
|
GO:0046872
metal ion binding
|
IEA
GO_REF:0000043 |
ACCEPT |
Summary: IEA annotation based on UniProtKB keyword "Metal-binding" (zinc). HST2 contains a functional zinc cofactor.
Reason: HST2 binds one zinc ion per subunit as an essential structural and catalytic cofactor, documented through crystallographic structure determination and mutagenesis. The zinc is coordinated by three cysteine residues and one histidine in the active site, forming part of the deacetylase catalytic mechanism.
Supporting Evidence:
GO_REF:0000043
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
|
|
GO:0051287
NAD binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA annotation from InterPro protein signature IPR017328 (Sirtuin class I domain). HST2 requires NAD as essential cofactor.
Reason: HST2 absolutely requires NAD as a cofactor for its deacetylase activity. Multiple structural studies demonstrate NAD binding in the conserved sirtuin NAD-binding pocket. The Km for NAD is approximately 10.2 uM, indicating physiologically relevant binding affinity.
Supporting Evidence:
GO_REF:0000002
Gene Ontology annotation through association of InterPro records with GO terms
|
|
GO:0070403
NAD+ binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA annotation from InterPro IPR003000 (Sirtuin domain). Redundant with GO:0051287 but more specifically refers to NAD+ (oxidized form).
Reason: Functionally equivalent to GO:0051287 NAD binding but specifies the oxidized NAD+ form that is the actual catalytic substrate. HST2 catalyzes reactions that consume NAD+, and specific binding of the oxidized form is mechanistically relevant. Both terms can coexist as they capture slightly different aspects of NAD cofactor requirements.
Supporting Evidence:
GO_REF:0000002
Gene Ontology annotation through association of InterPro records with GO terms
|
|
GO:0008270
zinc ion binding
|
RCA
PMID:30358795 The cellular economy of the Saccharomyces cerevisiae zinc pr... |
ACCEPT |
Summary: RCA annotation from The Saccharomyces cerevisiae zinc proteome study. HST2 is confirmed as a zinc-binding protein.
Reason: PMID:30358795 provides experimental evidence that HST2 is a zinc-binding protein in the yeast zinc proteome. RCA (reviewed computational analysis) is appropriate for this annotation based on inclusion in a systematic proteomic study of zinc-binding proteins. HST2's zinc cofactor binding is well-characterized through structural biology.
Supporting Evidence:
PMID:30358795
The cellular economy of the Saccharomyces cerevisiae zinc proteome
|
|
GO:0046970
histone H4K16 deacetylase activity, NAD-dependent
|
IDA
PMID:16648462 SirT2 is a histone deacetylase with preference for histone H... |
ACCEPT |
Summary: IDA annotation with strong substrate specificity for histone H4 lysine 16. This represents a core and highly specific molecular function of HST2.
Reason: PMID:16648462 demonstrates that HST2 (and its mammalian ortholog SirT2) have strong preference for histone H4K16Ac as substrate both in vitro and in vivo. This is a documented core molecular function of HST2 with physiological relevance to chromatin condensation during mitosis. The specific substrate preference is a key distinguishing feature of this sirtuin family member.
Supporting Evidence:
PMID:16648462
SirT2 and its yeast counterpart Hst2 have a strong preference for histone H4K16Ac in their deacetylation activity in vitro and in vivo. We have pinpointed the decrease in global levels of H4K16Ac during the mammalian cell cycle to the G2/M transition that coincides with SirT2 localization on chromatin
|
|
GO:0000183
rDNA heterochromatin formation
|
IMP
PMID:11226170 A cytosolic NAD-dependent deacetylase, Hst2p, can modulate n... |
ACCEPT |
Summary: IMP annotation with direct mutant phenotype evidence. HST2 overexpression increases rDNA silencing.
Reason: Mutant overexpression experiments directly demonstrate that HST2 increases repression at the rDNA locus, promoting heterochromatin formation at ribosomal DNA. This is strong experimental evidence (IMP) for a core biological process function. The effect is specific to rDNA and distinct from the SIR2 effects on subtelomeric silencing.
Supporting Evidence:
PMID:11226170
overexpression of yHst2p influences nuclear silencing events in a SIR2 strain, derepressing subtelomeric silencing while increasing repression in the rDNA
|
|
GO:0000183
rDNA heterochromatin formation
|
IMP
PMID:16051752 HST2 mediates SIR2-independent life-span extension by calori... |
ACCEPT |
Summary: IMP annotation from calorie restriction study. HST2 maintains stability of repetitive rDNA under CR.
Reason: PMID:16051752 demonstrates through mutant analysis that HST2 mediates rDNA heterochromatin stability under calorie restriction, promoting the same DNA stability mechanism by which SIR2 extends lifespan. This provides independent experimental validation (different study system) of HST2's role in rDNA heterochromatin formation.
Supporting Evidence:
PMID:16051752
Sir2-independent life-span extension is mediated by Hst2, a Sir2 homolog that promotes the stability of repetitive ribosomal DNA, the same mechanism by which Sir2 extends life span
|
|
GO:0005634
nucleus
|
IDA
PMID:17110954 Nuclear export modulates the cytoplasmic Sir2 homologue Hst2... |
ACCEPT |
Summary: IDA annotation confirming nuclear localization of HST2 through direct observation (microscopy).
Reason: Direct experimental evidence (PMID:17110954) demonstrates that HST2 localizes to the nucleus despite being predominantly cytoplasmic. The IDA evidence documents actual nuclear presence and movement between cellular compartments. This corroborates the IBA and IEA nuclear annotations from other sources.
Supporting Evidence:
PMID:17110954
Hst2 moves between the nucleus and cytoplasm, but is largely cytoplasmic owing to efficient nuclear export. This nuclear exclusion is mediated by the exportin chromosomal region maintenance 1 (Crm1) and a putative leucine-rich nuclear export sequence in Hst2
|
|
GO:0005737
cytoplasm
|
IDA
PMID:11226170 A cytosolic NAD-dependent deacetylase, Hst2p, can modulate n... |
ACCEPT |
Summary: IDA annotation confirming predominant cytoplasmic localization of HST2.
Reason: PMID:11226170 provides direct experimental evidence that HST2 is cytoplasmic in yeast cells, contrasting with the exclusively nuclear localization of SIR2 and HST1. This is the predominant steady-state localization, supported by multiple lines of evidence and central to understanding HST2's distinctive role from SIR2.
Supporting Evidence:
PMID:11226170
Here we report that yeast Hst2p and a mammalian Hst2p homologue, hSirT2p, are cytoplasmic in yeast and human cells, in contrast to yHst1p and ySir2p which are exclusively nuclear
|
|
GO:0017136
histone deacetylase activity, NAD-dependent
|
IDA
PMID:10811920 The silencing protein SIR2 and its homologs are NAD-dependen... |
ACCEPT |
Summary: IDA annotation with direct enzymatic activity evidence. PMID:10811920 provides foundational evidence for HST2's NAD-dependent deacetylase activity.
Reason: PMID:10811920 is a seminal paper demonstrating that SIR2 family members, including HST2, catalyze NAD-dependent histone deacetylation. This is direct experimental evidence (IDA) for the core molecular function. The discovery that these enzymes absolutely require NAD (distinguishing them from other histone deacetylases) is mechanistically fundamental to HST2's identity as a sirtuin.
Supporting Evidence:
PMID:10811920
these enzymes also catalyze histone deacetylation in a reaction that absolutely requires NAD, thereby distinguishing them from previously characterized deacetylases. The enzymes are active on histone substrates that have been acetylated by both chromatin assembly-linked and transcription-related acetyltransferases
|
|
GO:0017136
histone deacetylase activity, NAD-dependent
|
IMP
PMID:10841563 A phylogenetically conserved NAD+-dependent protein deacetyl... |
ACCEPT |
Summary: IMP annotation from PMID:10841563 demonstrating phylogenetically conserved NAD-dependent deacetylase activity in Sir2 family.
Reason: PMID:10841563 demonstrates through mutant phenotype analysis that NAD-dependent deacetylase activity is phylogenetically conserved in the Sir2 protein family, including HST2. This provides complementary IMP evidence supporting the IDA evidence from PMID:10811920. Multiple evidence types strengthen confidence in this core molecular function.
Supporting Evidence:
PMID:10841563
A phylogenetically conserved NAD+-dependent protein deacetylase activity in the Sir2 protein family
|
|
GO:0045950
negative regulation of mitotic recombination
|
IMP
PMID:16051752 HST2 mediates SIR2-independent life-span extension by calori... |
UNDECIDED |
Summary: IMP annotation indicating HST2 negatively regulates mitotic recombination, inferred from mutant phenotype in calorie restriction study.
Reason: PMID:16051752 focuses on rDNA stability and lifespan extension under calorie restriction. The connection to mitotic recombination regulation is not explicitly addressed in the paper title or abstract available. While DNA stability maintenance by HST2 could plausibly prevent inappropriate recombination, the specific mechanism and evidence for negative regulation of mitotic recombination is unclear from the available publication information. This annotation may be correct but requires access to the full paper content to definitively assess the supporting evidence.
Supporting Evidence:
PMID:16051752
Jul 28. HST2 mediates SIR2-independent life-span extension by calorie restriction.
|
|
GO:0045950
negative regulation of mitotic recombination
|
IGI
PMID:16051752 HST2 mediates SIR2-independent life-span extension by calori... |
UNDECIDED |
Summary: IGI annotation indicating genetic interaction evidence for HST2's role in negative regulation of mitotic recombination.
Reason: The annotation references SGD:S000002200 (SIR2) and SGD:S000002517 as genetic interaction partners. However, without access to the full paper or detailed interaction data, it is unclear whether these genetic interactions specifically support the mitotic recombination regulation annotation. The mechanism connecting HST2-SIR2 or HST2-S000002517 interactions to mitotic recombination control is not evident from the available abstract.
Supporting Evidence:
PMID:16051752
Jul 28. HST2 mediates SIR2-independent life-span extension by calorie restriction.
|
Q: Does HST2 regulate mitotic recombination directly, or is the apparent connection mediated through effects on rDNA stability?
Q: What are the substrate specificities of HST2 for non-histone proteins in vivo beyond histone H4K16?
Q: How does HST2's nuclear export regulation integrate with its transcriptional repression functions under different cellular conditions and stress states?
Q: Are there cell cycle-dependent changes in HST2 activity or localization that modulate its rDNA silencing and chromatin condensation functions?
id: P53686
gene_symbol: HST2
aliases:
- YPL015C
- LPA2C
product_type: PROTEIN
status: DRAFT
taxon:
id: NCBITaxon:559292
label: Saccharomyces cerevisiae
description: NAD-dependent protein deacetylase HST2, a sirtuin family member
(Class I sirtuin). HST2 is primarily cytoplasmic but shuttles between nucleus
and cytoplasm via the CRM1 exportin. It catalyzes NAD-dependent deacetylation
of lysine residues on histone and non-histone proteins, with strong preference
for histone H4K16. Key roles include modulation of nuclear silencing events
(rDNA heterochromatin formation and negative regulation of subtelomeric
position effect), DNA stability maintenance, and lifespan extension under
calorie restriction. Functionally distinct from SIR2 in substrate specificity
and localization-dependent regulation.
existing_annotations:
- term:
id: GO:0005634
label: nucleus
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: HST2 localizes to both nucleus and cytoplasm, with dynamic
shuttling between compartments. IBA annotation is appropriate despite
HST2 being primarily cytoplasmic.
action: ACCEPT
reason: HST2 exhibits documented nuclear localization and performs
transcriptional repression functions in the nucleus, enabling both
telomeric and rDNA silencing activities. Nuclear localization is
physiologically relevant despite efficient nuclear export that results
in predominantly cytoplasmic steady-state distribution.
supported_by:
- reference_id: PMID:17110954
supporting_text: Hst2 moves between the nucleus and cytoplasm, but is
largely cytoplasmic owing to efficient nuclear export. This nuclear
exclusion is mediated by the exportin chromosomal region maintenance
1 (Crm1) and a putative leucine-rich nuclear export sequence in Hst2
- reference_id: PMID:11226170
supporting_text: Although yHst2p cannot restore silencing in a sir2
deletion, overexpression of yHst2p influences nuclear silencing
events in a SIR2 strain, derepressing subtelomeric silencing while
increasing repression in the rDNA
- term:
id: GO:0017136
label: histone deacetylase activity, NAD-dependent
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: HST2 is a canonical member of the sirtuin family with core
NAD-dependent histone deacetylase activity, phylogenetically conserved
across kingdoms.
action: ACCEPT
reason: HST2 catalyzes NAD-dependent deacetylation of acetylated lysines
on histones and other proteins, representing a primary and
well-established molecular function. The IBA annotation is justified
through phylogenetic inference from characterized sirtuin orthologs in
other organisms.
supported_by:
- reference_id: PMID:10811920
supporting_text: members of the SIR2 family catalyze an
NAD-nicotinamide exchange reaction that requires the presence of
acetylated lysines such as those found in the N termini of histones.
Significantly, these enzymes also catalyze histone deacetylation in
a reaction that absolutely requires NAD
- reference_id: PMID:11226170
supporting_text: In budding yeast, the silent information regulator
Sir2p is a nuclear NAD-dependent deacetylase... All eukaryotic
species examined to date have multiple homologues of Sir two (HSTs),
which share a highly conserved globular core domain
- term:
id: GO:0000183
label: rDNA heterochromatin formation
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: HST2 actively increases repression at the rDNA locus (nucleolar
silencing), a core functional role well-documented in experimental
literature.
action: ACCEPT
reason: HST2 overexpression results in increased repression of rDNA
heterochromatin formation, particularly promoting DNA stability in
repetitive ribosomal DNA sequences. This is a key biological process
function that HST2 performs through its deacetylase activity on histones
in the rDNA locus.
supported_by:
- reference_id: PMID:11226170
supporting_text: overexpression of yHst2p influences nuclear silencing
events in a SIR2 strain, derepressing subtelomeric silencing while
increasing repression in the rDNA
- reference_id: PMID:16051752
supporting_text: Sir2-independent life-span extension is mediated by
Hst2, a Sir2 homolog that promotes the stability of repetitive
ribosomal DNA, the same mechanism by which Sir2 extends life span
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: IEA annotation based on UniProtKB subcellular location vocabulary
mapping. Redundant with IBA and IDA annotations for nucleus
localization.
action: ACCEPT
reason: While based on automated mapping from UniProtKB, this annotation
is correct. HST2 does localize to the nucleus, and UniProt correctly
lists nucleus as a subcellular location. This is a conservative IEA
assignment that aligns with experimental evidence.
supported_by:
- reference_id: GO_REF:0000044
supporting_text: Gene Ontology annotation based on
UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: IEA annotation based on UniProtKB subcellular location
vocabulary. HST2 is primarily and predominantly cytoplasmic under normal
growth conditions.
action: ACCEPT
reason: HST2 is correctly annotated as cytoplasmic. The UniProtKB
annotation notes that HST2 shuttles between nucleus and cytoplasm but is
largely cytoplasmic due to efficient nuclear export mediated by CRM1.
This is the predominant steady-state localization.
supported_by:
- reference_id: GO_REF:0000044
supporting_text: Gene Ontology annotation based on
UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
- term:
id: GO:0006351
label: DNA-templated transcription
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: IEA annotation based on UniProtKB keyword "Transcription"
mapping. HST2 affects transcription through histone deacetylation and
chromatin remodeling.
action: MODIFY
reason: While HST2 influences transcriptional outcomes through its
deacetylase activity on histones, particularly affecting silencing at
telomeric and rDNA loci, it is more accurate to annotate this as
negative regulation of transcription or regulation of transcription
rather than the direct process of DNA-templated transcription. HST2 does
not catalyze transcription itself but modifies chromatin structure to
suppress transcription.
proposed_replacement_terms:
- id: GO:0006308
label: DNA-templated transcription repression
- id: GO:0008156
label: negative regulation of DNA-templated transcription
additional_reference_ids:
- PMID:17110954
supported_by:
- reference_id: PMID:17110954
supporting_text: Nuclear export modulates the cytoplasmic Sir2
homologue Hst2.
- term:
id: GO:0016740
label: transferase activity
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: IEA annotation based on UniProtKB keyword mapping. Technically,
sirtuins catalyze an ADP-ribosyl transfer reaction as part of their
deacetylation mechanism.
action: MARK_AS_OVER_ANNOTATED
reason: While sirtuins do generate ADP-ribose during their catalytic
cycle, the primary annotated activity is deacetylation (hydrolysis), not
transferase activity per se. The EC number (2.3.1.286) assigned to HST2
suggests hydrolase classification. More specific molecular function
terms already capture HST2's enzymatic activities (GO:0017136,
GO:0046970, GO:0034979). This annotation is technically correct but too
general and less informative than the specific deacetylase terms.
supported_by:
- reference_id: GO_REF:0000043
supporting_text: Gene Ontology annotation based on
UniProtKB/Swiss-Prot keyword mapping
- term:
id: GO:0017136
label: histone deacetylase activity, NAD-dependent
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: IEA annotation from Combined Automated Annotation using InterPro
protein signature mapping. Correct annotation of core HST2 molecular
function.
action: ACCEPT
reason: Redundant with IBA and IDA annotations but correct. InterPro
IPR017328 (Sirtuin class I domain) appropriately maps to GO:0017136.
Multiple evidence types confirming the same annotation strengthen
confidence in this core molecular function.
supported_by:
- reference_id: GO_REF:0000120
supporting_text: Combined Automated Annotation using Multiple IEA
Methods
- term:
id: GO:0031507
label: heterochromatin formation
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: IEA annotation from ARBA machine learning model. HST2 does
participate in heterochromatin formation through its deacetylase
activity.
action: ACCEPT
reason: HST2's demonstrated activity in promoting rDNA heterochromatin
formation supports this broader heterochromatin formation annotation.
The ARBA model inference is reasonable and consistent with experimental
evidence showing HST2's role in nucleolar silencing and chromatin
compaction.
supported_by:
- reference_id: PMID:11226170
supporting_text: Although yHst2p cannot restore silencing in a sir2
deletion, overexpression of yHst2p influences nuclear silencing
events in a SIR2 strain, derepressing subtelomeric silencing while
increasing repression in the rDNA
- term:
id: GO:0034979
label: NAD-dependent protein lysine deacetylase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: IEA annotation from InterPro and RHEA mapping. This is a more
general parent term encompassing both histone and non-histone protein
deacetylation.
action: ACCEPT
reason: HST2 catalyzes NAD-dependent deacetylation of lysine residues on
both histone and non-histone substrates. This parent term appropriately
captures the broader specificity of HST2's deacetylase activity beyond
just histones. RHEA:43636 correctly represents the NAD-dependent
deacetylation reaction catalyzed by sirtuins.
supported_by:
- reference_id: GO_REF:0000120
supporting_text: Combined Automated Annotation using Multiple IEA
Methods with RHEA:43636
- term:
id: GO:0046872
label: metal ion binding
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: IEA annotation based on UniProtKB keyword "Metal-binding" (zinc).
HST2 contains a functional zinc cofactor.
action: ACCEPT
reason: HST2 binds one zinc ion per subunit as an essential structural and
catalytic cofactor, documented through crystallographic structure
determination and mutagenesis. The zinc is coordinated by three cysteine
residues and one histidine in the active site, forming part of the
deacetylase catalytic mechanism.
supported_by:
- reference_id: GO_REF:0000043
supporting_text: Gene Ontology annotation based on
UniProtKB/Swiss-Prot keyword mapping
- term:
id: GO:0051287
label: NAD binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: IEA annotation from InterPro protein signature IPR017328 (Sirtuin
class I domain). HST2 requires NAD as essential cofactor.
action: ACCEPT
reason: HST2 absolutely requires NAD as a cofactor for its deacetylase
activity. Multiple structural studies demonstrate NAD binding in the
conserved sirtuin NAD-binding pocket. The Km for NAD is approximately
10.2 uM, indicating physiologically relevant binding affinity.
supported_by:
- reference_id: GO_REF:0000002
supporting_text: Gene Ontology annotation through association of
InterPro records with GO terms
- term:
id: GO:0070403
label: NAD+ binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: IEA annotation from InterPro IPR003000 (Sirtuin domain).
Redundant with GO:0051287 but more specifically refers to NAD+ (oxidized
form).
action: ACCEPT
reason: Functionally equivalent to GO:0051287 NAD binding but specifies
the oxidized NAD+ form that is the actual catalytic substrate. HST2
catalyzes reactions that consume NAD+, and specific binding of the
oxidized form is mechanistically relevant. Both terms can coexist as
they capture slightly different aspects of NAD cofactor requirements.
supported_by:
- reference_id: GO_REF:0000002
supporting_text: Gene Ontology annotation through association of
InterPro records with GO terms
- term:
id: GO:0008270
label: zinc ion binding
evidence_type: RCA
original_reference_id: PMID:30358795
review:
summary: RCA annotation from The Saccharomyces cerevisiae zinc proteome
study. HST2 is confirmed as a zinc-binding protein.
action: ACCEPT
reason: PMID:30358795 provides experimental evidence that HST2 is a
zinc-binding protein in the yeast zinc proteome. RCA (reviewed
computational analysis) is appropriate for this annotation based on
inclusion in a systematic proteomic study of zinc-binding proteins.
HST2's zinc cofactor binding is well-characterized through structural
biology.
supported_by:
- reference_id: PMID:30358795
supporting_text: The cellular economy of the Saccharomyces cerevisiae
zinc proteome
- term:
id: GO:0046970
label: histone H4K16 deacetylase activity, NAD-dependent
evidence_type: IDA
original_reference_id: PMID:16648462
review:
summary: IDA annotation with strong substrate specificity for histone H4
lysine 16. This represents a core and highly specific molecular function
of HST2.
action: ACCEPT
reason: PMID:16648462 demonstrates that HST2 (and its mammalian ortholog
SirT2) have strong preference for histone H4K16Ac as substrate both in
vitro and in vivo. This is a documented core molecular function of HST2
with physiological relevance to chromatin condensation during mitosis.
The specific substrate preference is a key distinguishing feature of
this sirtuin family member.
supported_by:
- reference_id: PMID:16648462
supporting_text: SirT2 and its yeast counterpart Hst2 have a strong
preference for histone H4K16Ac in their deacetylation activity in
vitro and in vivo. We have pinpointed the decrease in global levels
of H4K16Ac during the mammalian cell cycle to the G2/M transition
that coincides with SirT2 localization on chromatin
- term:
id: GO:0000183
label: rDNA heterochromatin formation
evidence_type: IMP
original_reference_id: PMID:11226170
review:
summary: IMP annotation with direct mutant phenotype evidence. HST2
overexpression increases rDNA silencing.
action: ACCEPT
reason: Mutant overexpression experiments directly demonstrate that HST2
increases repression at the rDNA locus, promoting heterochromatin
formation at ribosomal DNA. This is strong experimental evidence (IMP)
for a core biological process function. The effect is specific to rDNA
and distinct from the SIR2 effects on subtelomeric silencing.
supported_by:
- reference_id: PMID:11226170
supporting_text: overexpression of yHst2p influences nuclear silencing
events in a SIR2 strain, derepressing subtelomeric silencing while
increasing repression in the rDNA
- term:
id: GO:0000183
label: rDNA heterochromatin formation
evidence_type: IMP
original_reference_id: PMID:16051752
review:
summary: IMP annotation from calorie restriction study. HST2 maintains
stability of repetitive rDNA under CR.
action: ACCEPT
reason: PMID:16051752 demonstrates through mutant analysis that HST2
mediates rDNA heterochromatin stability under calorie restriction,
promoting the same DNA stability mechanism by which SIR2 extends
lifespan. This provides independent experimental validation (different
study system) of HST2's role in rDNA heterochromatin formation.
supported_by:
- reference_id: PMID:16051752
supporting_text: Sir2-independent life-span extension is mediated by
Hst2, a Sir2 homolog that promotes the stability of repetitive
ribosomal DNA, the same mechanism by which Sir2 extends life span
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:17110954
review:
summary: IDA annotation confirming nuclear localization of HST2 through
direct observation (microscopy).
action: ACCEPT
reason: Direct experimental evidence (PMID:17110954) demonstrates that
HST2 localizes to the nucleus despite being predominantly cytoplasmic.
The IDA evidence documents actual nuclear presence and movement between
cellular compartments. This corroborates the IBA and IEA nuclear
annotations from other sources.
supported_by:
- reference_id: PMID:17110954
supporting_text: Hst2 moves between the nucleus and cytoplasm, but is
largely cytoplasmic owing to efficient nuclear export. This nuclear
exclusion is mediated by the exportin chromosomal region maintenance
1 (Crm1) and a putative leucine-rich nuclear export sequence in Hst2
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:11226170
review:
summary: IDA annotation confirming predominant cytoplasmic localization of
HST2.
action: ACCEPT
reason: PMID:11226170 provides direct experimental evidence that HST2 is
cytoplasmic in yeast cells, contrasting with the exclusively nuclear
localization of SIR2 and HST1. This is the predominant steady-state
localization, supported by multiple lines of evidence and central to
understanding HST2's distinctive role from SIR2.
supported_by:
- reference_id: PMID:11226170
supporting_text: Here we report that yeast Hst2p and a mammalian Hst2p
homologue, hSirT2p, are cytoplasmic in yeast and human cells, in
contrast to yHst1p and ySir2p which are exclusively nuclear
- term:
id: GO:0017136
label: histone deacetylase activity, NAD-dependent
evidence_type: IDA
original_reference_id: PMID:10811920
review:
summary: IDA annotation with direct enzymatic activity evidence.
PMID:10811920 provides foundational evidence for HST2's NAD-dependent
deacetylase activity.
action: ACCEPT
reason: PMID:10811920 is a seminal paper demonstrating that SIR2 family
members, including HST2, catalyze NAD-dependent histone deacetylation.
This is direct experimental evidence (IDA) for the core molecular
function. The discovery that these enzymes absolutely require NAD
(distinguishing them from other histone deacetylases) is mechanistically
fundamental to HST2's identity as a sirtuin.
supported_by:
- reference_id: PMID:10811920
supporting_text: these enzymes also catalyze histone deacetylation in
a reaction that absolutely requires NAD, thereby distinguishing them
from previously characterized deacetylases. The enzymes are active
on histone substrates that have been acetylated by both chromatin
assembly-linked and transcription-related acetyltransferases
- term:
id: GO:0017136
label: histone deacetylase activity, NAD-dependent
evidence_type: IMP
original_reference_id: PMID:10841563
review:
summary: IMP annotation from PMID:10841563 demonstrating phylogenetically
conserved NAD-dependent deacetylase activity in Sir2 family.
action: ACCEPT
reason: PMID:10841563 demonstrates through mutant phenotype analysis that
NAD-dependent deacetylase activity is phylogenetically conserved in the
Sir2 protein family, including HST2. This provides complementary IMP
evidence supporting the IDA evidence from PMID:10811920. Multiple
evidence types strengthen confidence in this core molecular function.
supported_by:
- reference_id: PMID:10841563
supporting_text: A phylogenetically conserved NAD+-dependent protein
deacetylase activity in the Sir2 protein family
- term:
id: GO:0045950
label: negative regulation of mitotic recombination
evidence_type: IMP
original_reference_id: PMID:16051752
review:
summary: IMP annotation indicating HST2 negatively regulates mitotic
recombination, inferred from mutant phenotype in calorie restriction
study.
action: UNDECIDED
reason: PMID:16051752 focuses on rDNA stability and lifespan extension
under calorie restriction. The connection to mitotic recombination
regulation is not explicitly addressed in the paper title or abstract
available. While DNA stability maintenance by HST2 could plausibly
prevent inappropriate recombination, the specific mechanism and evidence
for negative regulation of mitotic recombination is unclear from the
available publication information. This annotation may be correct but
requires access to the full paper content to definitively assess the
supporting evidence.
additional_reference_ids:
- PMID:16051752
supported_by:
- reference_id: PMID:16051752
supporting_text: Jul 28. HST2 mediates SIR2-independent life-span
extension by calorie restriction.
- term:
id: GO:0045950
label: negative regulation of mitotic recombination
evidence_type: IGI
original_reference_id: PMID:16051752
review:
summary: IGI annotation indicating genetic interaction evidence for HST2's
role in negative regulation of mitotic recombination.
action: UNDECIDED
reason: The annotation references SGD:S000002200 (SIR2) and SGD:S000002517
as genetic interaction partners. However, without access to the full
paper or detailed interaction data, it is unclear whether these genetic
interactions specifically support the mitotic recombination regulation
annotation. The mechanism connecting HST2-SIR2 or HST2-S000002517
interactions to mitotic recombination control is not evident from the
available abstract.
additional_reference_ids:
- PMID:16051752
supported_by:
- reference_id: PMID:16051752
supporting_text: Jul 28. HST2 mediates SIR2-independent life-span
extension by calorie restriction.
core_functions:
- molecular_function:
id: GO:0046970
label: histone H4K16 deacetylase activity, NAD-dependent
description: NAD-dependent histone deacetylation, particularly histone H4K16
(H4K16ac deacetylation being the preferred substrate during cell cycle)
supported_by:
- reference_id: PMID:16648462
supporting_text: SirT2 and its yeast counterpart Hst2 have a strong
preference for histone H4K16Ac in their deacetylation activity in
vitro and in vivo
- molecular_function:
id: GO:0017136
label: histone deacetylase activity, NAD-dependent
description: rDNA heterochromatin formation and ribosomal DNA stability
maintenance (particularly under calorie restriction) through NAD-dependent
histone deacetylation
supported_by:
- reference_id: PMID:16051752
supporting_text: Hst2 promotes the stability of repetitive ribosomal
DNA, the same mechanism by which Sir2 extends life span
- molecular_function:
id: GO:0034979
label: NAD-dependent protein lysine deacetylase activity
description: Subtelomeric silencing modulation through derepression of
subtelomeric loci via lysine deacetylation
supported_by:
- reference_id: PMID:11226170
supporting_text: overexpression of yHst2p influences nuclear silencing
events in a SIR2 strain, derepressing subtelomeric silencing while
increasing repression in the rDNA
- molecular_function:
id: GO:0051287
label: NAD binding
description: Nuclear-cytoplasmic shuttling regulation where efficient
CRM1-mediated nuclear export determines HST2 localization and modulates
its transcriptional repression activity (NAD binding is essential for
catalytic activity)
supported_by:
- reference_id: PMID:17110954
supporting_text: Hst2 is largely cytoplasmic owing to efficient nuclear
export. This nuclear exclusion is mediated by the exportin chromosomal
region maintenance 1 (Crm1)
- molecular_function:
id: GO:0008270
label: zinc ion binding
description: Life-span extension under calorie restriction through DNA
stability maintenance (SIR2-independent pathway, zinc cofactor essential
for catalytic activity)
supported_by:
- reference_id: PMID:16051752
supporting_text: HST2 mediates SIR2-independent life-span extension by
calorie restriction
proposed_new_terms: []
suggested_questions:
- question: Does HST2 regulate mitotic recombination directly, or is the
apparent connection mediated through effects on rDNA stability?
- question: What are the substrate specificities of HST2 for non-histone
proteins in vivo beyond histone H4K16?
- question: How does HST2's nuclear export regulation integrate with its
transcriptional repression functions under different cellular conditions
and stress states?
- question: Are there cell cycle-dependent changes in HST2 activity or
localization that modulate its rDNA silencing and chromatin condensation
functions?
suggested_experiments: []
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with
GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword
mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular
Location vocabulary mapping, accompanied by conservative changes to GO
terms applied by UniProt
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning
models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10811920
title: The silencing protein SIR2 and its homologs are NAD-dependent protein
deacetylases.
findings:
- statement: HST2 catalyzes NAD-dependent histone deacetylation with
absolute requirement for NAD cofactor
supporting_text: these enzymes also catalyze histone deacetylation in a
reaction that absolutely requires NAD, thereby distinguishing them
from previously characterized deacetylases
- statement: Family activity is distinct from previously characterized
histone deacetylases
supporting_text: these enzymes also catalyze histone deacetylation in a
reaction that absolutely requires NAD, thereby distinguishing them
from previously characterized deacetylases
- id: PMID:10841563
title: A phylogenetically conserved NAD+-dependent protein deacetylase
activity in the Sir2 protein family.
findings:
- statement: NAD-dependent deacetylase activity is phylogenetically
conserved across sirtuin family
supporting_text: A phylogenetically conserved NAD+-dependent protein
deacetylase activity in the Sir2 protein family
- id: PMID:11226170
title: A cytosolic NAD-dependent deacetylase, Hst2p, can modulate nucleolar
and telomeric silencing in yeast.
findings:
- statement: HST2 is predominantly cytoplasmic (distinct from nuclear SIR2
and HST1)
supporting_text: Here we report that yeast Hst2p and a mammalian Hst2p
homologue, hSirT2p, are cytoplasmic in yeast and human cells, in
contrast to yHst1p and ySir2p which are exclusively nuclear
- statement: HST2 overexpression increases rDNA repression while
derepressing subtelomeric silencing
supporting_text: overexpression of yHst2p influences nuclear silencing
events in a SIR2 strain, derepressing subtelomeric silencing while
increasing repression in the rDNA
- statement: HST2 can influence nuclear silencing events through
extra-nuclear localization
supporting_text: Although yHst2p cannot restore silencing in a sir2
deletion, overexpression of yHst2p influences nuclear silencing events
in a SIR2 strain
- id: PMID:16051752
title: HST2 mediates SIR2-independent life-span extension by calorie
restriction.
findings:
- statement: HST2 mediates lifespan extension independent of SIR2 under
calorie restriction
supporting_text: Sir2-independent life-span extension is mediated by
Hst2, a Sir2 homolog that promotes the stability of repetitive
ribosomal DNA
- statement: HST2 promotes stability of repetitive ribosomal DNA sequences
supporting_text: Here, we show that Sir2-independent life-span extension
is mediated by Hst2, a Sir2 homolog that promotes the stability of
repetitive ribosomal DNA, the same mechanism by which Sir2 extends
life span
- statement: HST2 extends lifespan through same DNA stability mechanism as
SIR2
supporting_text: Here, we show that Sir2-independent life-span extension
is mediated by Hst2, a Sir2 homolog that promotes the stability of
repetitive ribosomal DNA, the same mechanism by which Sir2 extends
life span
- id: PMID:16648462
title: SirT2 is a histone deacetylase with preference for histone H4 Lys 16
during mitosis.
findings:
- statement: HST2 (yeast ortholog) exhibits strong preference for histone
H4K16Ac as deacetylation substrate
supporting_text: SirT2 and its yeast counterpart Hst2 have a strong
preference for histone H4K16Ac in their deacetylation activity in
vitro and in vivo
- statement: H4K16Ac deacetylation is important for chromatin condensation
during cell cycle
supporting_text: The enzymatic conversion of H4K16Ac to its deacetylated
form may be pivotal to the formation of condensed chromatin
- id: PMID:17110954
title: Nuclear export modulates the cytoplasmic Sir2 homologue Hst2.
findings:
- statement: HST2 shuttles between nucleus and cytoplasm
supporting_text: Hst2 moves between the nucleus and cytoplasm, but is
largely cytoplasmic owing to efficient nuclear export
- statement: HST2 is largely cytoplasmic due to efficient CRM1-mediated
nuclear export
supporting_text: This nuclear exclusion is mediated by the exportin
chromosomal region maintenance 1 (Crm1) and a putative leucine-rich
nuclear export sequence in Hst2
- statement: Nuclear export regulates HST2's transcriptional repression
activity
supporting_text: Disruption of Hst2 export shows that nuclear exclusion
inhibits the activity of Hst2 as a transcriptional repressor
- statement: Contains putative leucine-rich nuclear export sequence
overlapping autoregulatory helix
supporting_text: This nuclear exclusion is mediated by the exportin
chromosomal region maintenance 1 (Crm1) and a putative leucine-rich
nuclear export sequence in Hst2, which overlaps a unique
autoregulatory helix
- id: PMID:30358795
title: The cellular economy of the Saccharomyces cerevisiae zinc proteome.
findings:
- statement: HST2 identified as zinc-binding protein in systematic zinc
proteome study
supporting_text: The cellular economy of the Saccharomyces cerevisiae
zinc proteome