NAP1 encodes a conserved histone chaperone with roles in chromatin assembly, ribosome biogenesis, and cell cycle regulation. Nap1p functions primarily as an H2A-H2B chaperone, cooperating with the karyopherin Kap114 to transport histone H2A-H2B dimers into the nucleus for deposition into nucleosomes; binding of Ran-GTP (Gsp1) to this complex promotes accurate nucleosome assembly. Nap1p also participates in histone exchange, facilitating replacement of canonical H2A-H2B dimers with variant dimers. Beyond chromatin, Nap1p serves as an assembly chaperone for the small ribosomal subunit protein eS6 (Rps6a/Rps6b), promoting its solubility and contributing to 40S subunit biogenesis. During mitosis, Nap1p regulates septin organization at the bud neck and modulates B-type cyclin (Clb2p) function, linking chromatin dynamics to cell cycle progression. Orthologous to human NAP1L1-4.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0000785
chromatin
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Manual review: chromatin is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0005634
nucleus
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Manual review: nucleus may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0006334
nucleosome assembly
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Manual review: nucleosome assembly is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0042393
histone binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Manual review: histone binding is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0003682
chromatin binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Manual review: chromatin binding is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0003677
DNA binding
|
IEA
GO_REF:0000043 |
KEEP AS NON CORE |
Summary: Manual review: DNA binding may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Manual review: nucleus may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: Manual review: cytoplasm may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0005935
cellular bud neck
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: Manual review: cellular bud neck may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0005940
septin ring
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Manual review: septin ring may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0006334
nucleosome assembly
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: Manual review: nucleosome assembly is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0005515
protein binding
|
IPI
PMID:10688190 A comprehensive analysis of protein-protein interactions in ... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:11805837 Systematic identification of protein complexes in Saccharomy... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:12058072 Cell cycle-dependent assembly of a Gin4-septin complex. |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:14645854 ATP-driven exchange of histone H2AZ variant catalyzed by SWR... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:14759368 High-definition macromolecular composition of yeast RNA-proc... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:15045029 A protein complex containing the conserved Swi2/Snf2-related... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:16299494 A phosphatase complex that dephosphorylates gammaH2AX regula... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:16429126 Proteome survey reveals modularity of the yeast cell machine... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:16554755 Global landscape of protein complexes in the yeast Saccharom... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:18467557 An in vivo map of the yeast protein interactome. |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:18719252 High-quality binary protein interaction map of the yeast int... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:19172749 Histone chaperone specificity in Rtt109 activation. |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:19536198 An atlas of chaperone-protein interactions in Saccharomyces ... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:20489023 A global protein kinase and phosphatase interaction network ... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:21179020 Defining the budding yeast chromatin-associated interactome. |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:23468594 A safeguard mechanism regulates Rho GTPases to coordinate cy... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:25416945 A memory system of negative polarity cues prevents replicati... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:37968396 The social and structural architecture of the yeast protein ... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:9214386 Control of mitotic events by Nap1 and the Gin4 kinase. |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:9813092 The septins are required for the mitosis-specific activation... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0042802
identical protein binding
|
IPI
PMID:16432217 The structure of nucleosome assembly protein 1. |
MARK AS OVER ANNOTATED |
Summary: Manual review: identical protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0042802
identical protein binding
|
IPI
PMID:18467557 An in vivo map of the yeast protein interactome. |
MARK AS OVER ANNOTATED |
Summary: Manual review: identical protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0042802
identical protein binding
|
IPI
PMID:18719252 High-quality binary protein interaction map of the yeast int... |
MARK AS OVER ANNOTATED |
Summary: Manual review: identical protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0042802
identical protein binding
|
IPI
PMID:21179020 Defining the budding yeast chromatin-associated interactome. |
MARK AS OVER ANNOTATED |
Summary: Manual review: identical protein binding is too generic or over-extended for NAP1.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0140597
protein carrier chaperone
|
IDA
PMID:31062022 Tsr4 and Nap1, two novel members of the ribosomal protein ch... |
ACCEPT |
Summary: Manual review: protein carrier chaperone is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0000511
H2A-H2B histone complex chaperone activity
|
IDA
PMID:39601790 Nap1 and Kap114 co-chaperone H2A-H2B and facilitate targeted... |
ACCEPT |
Summary: Manual review: H2A-H2B histone complex chaperone activity is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0006334
nucleosome assembly
|
IDA
PMID:39601790 Nap1 and Kap114 co-chaperone H2A-H2B and facilitate targeted... |
ACCEPT |
Summary: Manual review: nucleosome assembly is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0000511
H2A-H2B histone complex chaperone activity
|
IDA
PMID:27225933 Structural evidence for Nap1-dependent H2A-H2B deposition an... |
ACCEPT |
Summary: Manual review: H2A-H2B histone complex chaperone activity is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0006334
nucleosome assembly
|
IDA
PMID:27225933 Structural evidence for Nap1-dependent H2A-H2B deposition an... |
ACCEPT |
Summary: Manual review: nucleosome assembly is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0000920
septum digestion after cytokinesis
|
NAS
PMID:12058072 Cell cycle-dependent assembly of a Gin4-septin complex. |
KEEP AS NON CORE |
Summary: Manual review: septum digestion after cytokinesis may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0000921
septin ring assembly
|
NAS
PMID:12058072 Cell cycle-dependent assembly of a Gin4-septin complex. |
KEEP AS NON CORE |
Summary: Manual review: septin ring assembly may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0006607
NLS-bearing protein import into nucleus
|
IMP
PMID:12456659 A role for nucleosome assembly protein 1 in the nuclear tran... |
KEEP AS NON CORE |
Summary: Manual review: NLS-bearing protein import into nucleus may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0042274
ribosomal small subunit biogenesis
|
IGI
PMID:31062022 Tsr4 and Nap1, two novel members of the ribosomal protein ch... |
KEEP AS NON CORE |
Summary: Manual review: ribosomal small subunit biogenesis may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0051082
unfolded protein binding
|
IDA
PMID:31062022 Tsr4 and Nap1, two novel members of the ribosomal protein ch... |
MODIFY |
Summary: Manual review: unfolded protein binding is better represented by a more specific replacement term for NAP1.
Reason: Modified to align with current curation guidance and improve term specificity.
Proposed replacements:
H2A-H2B histone complex chaperone activity
|
|
GO:0005737
cytoplasm
|
IDA
PMID:30341817 Septin-associated proteins Aim44 and Nis1 traffic between th... |
KEEP AS NON CORE |
Summary: Manual review: cytoplasm may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0032174
cellular bud neck septin collar
|
IDA
PMID:30341817 Septin-associated proteins Aim44 and Nis1 traffic between th... |
KEEP AS NON CORE |
Summary: Manual review: cellular bud neck septin collar may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0032153
cell division site
|
IDA
PMID:25416945 A memory system of negative polarity cues prevents replicati... |
KEEP AS NON CORE |
Summary: Manual review: cell division site may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0098841
protein localization to cell division site after cytokinesis
|
IMP
PMID:25416945 A memory system of negative polarity cues prevents replicati... |
KEEP AS NON CORE |
Summary: Manual review: protein localization to cell division site after cytokinesis may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0006334
nucleosome assembly
|
IDA
PMID:1400414 Functional analysis of nucleosome assembly protein, NAP-1. T... |
ACCEPT |
Summary: Manual review: nucleosome assembly is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0008047
enzyme activator activity
|
IDA
PMID:22308335 Histone density is maintained during transcription mediated ... |
KEEP AS NON CORE |
Summary: Manual review: enzyme activator activity may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0031116
positive regulation of microtubule polymerization
|
IMP
PMID:7622567 NAP1 acts with Clb1 to perform mitotic functions and to supp... |
KEEP AS NON CORE |
Summary: Manual review: positive regulation of microtubule polymerization may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0005737
cytoplasm
|
IDA
PMID:7622566 Members of the NAP/SET family of proteins interact specifica... |
KEEP AS NON CORE |
Summary: Manual review: cytoplasm may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0006334
nucleosome assembly
|
IDA
PMID:2016313 Identification and molecular cloning of yeast homolog of nuc... |
ACCEPT |
Summary: Manual review: nucleosome assembly is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0006337
nucleosome disassembly
|
IDA
PMID:16492771 Chromatin remodeling by nucleosome disassembly in vitro. |
ACCEPT |
Summary: Manual review: nucleosome disassembly is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0007117
budding cell bud growth
|
IMP
PMID:13680156 Saccharomyces cerevisiae Ats1p interacts with Nap1p, a cytop... |
KEEP AS NON CORE |
Summary: Manual review: budding cell bud growth may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0030332
cyclin binding
|
IPI
PMID:7622566 Members of the NAP/SET family of proteins interact specifica... |
KEEP AS NON CORE |
Summary: Manual review: cyclin binding may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0032968
positive regulation of transcription elongation by RNA polymerase II
|
IDA
PMID:22308335 Histone density is maintained during transcription mediated ... |
KEEP AS NON CORE |
Summary: Manual review: positive regulation of transcription elongation by RNA polymerase II may be context-dependent or peripheral for NAP1.
Reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
|
|
GO:0042393
histone binding
|
IDA
PMID:17289584 Chz1, a nuclear chaperone for histone H2AZ. |
ACCEPT |
Summary: Manual review: histone binding is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0042393
histone binding
|
IDA
PMID:21348863 Assembly states of the nucleosome assembly protein 1 (NAP-1)... |
ACCEPT |
Summary: Manual review: histone binding is consistent with known biology of NAP1.
Reason: Retained as supported or plausible for this gene and evidence context.
|
id: P25293
gene_symbol: NAP1
product_type: PROTEIN
status: DRAFT
taxon:
id: NCBITaxon:559292
label: Saccharomyces cerevisiae
description: >-
NAP1 encodes a conserved histone chaperone with roles in chromatin assembly,
ribosome biogenesis, and cell cycle regulation. Nap1p functions primarily as
an H2A-H2B chaperone, cooperating with the karyopherin Kap114 to transport
histone H2A-H2B dimers into the nucleus for deposition into nucleosomes;
binding of Ran-GTP (Gsp1) to this complex promotes accurate nucleosome
assembly. Nap1p also participates in histone exchange, facilitating
replacement of canonical H2A-H2B dimers with variant dimers. Beyond
chromatin, Nap1p serves as an assembly chaperone for the small ribosomal
subunit protein eS6 (Rps6a/Rps6b), promoting its solubility and
contributing to 40S subunit biogenesis. During mitosis, Nap1p regulates
septin organization at the bud neck and modulates B-type cyclin (Clb2p)
function, linking chromatin dynamics to cell cycle progression. Orthologous
to human NAP1L1-4.
existing_annotations:
- term:
id: GO:0000785
label: chromatin
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'Manual review: chromatin is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0005634
label: nucleus
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'Manual review: nucleus may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0006334
label: nucleosome assembly
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'Manual review: nucleosome assembly is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0042393
label: histone binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'Manual review: histone binding is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0003682
label: chromatin binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: 'Manual review: chromatin binding is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0003677
label: DNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: 'Manual review: DNA binding may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: 'Manual review: nucleus may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: 'Manual review: cytoplasm may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0005935
label: cellular bud neck
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: 'Manual review: cellular bud neck may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0005940
label: septin ring
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: 'Manual review: septin ring may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0006334
label: nucleosome assembly
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: 'Manual review: nucleosome assembly is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:10688190
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11805837
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:12058072
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14645854
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14759368
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15045029
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16299494
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16429126
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16554755
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18467557
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18719252
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19172749
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19536198
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20489023
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21179020
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23468594
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416945
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:37968396
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9214386
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9813092
review:
summary: 'Manual review: protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:16432217
review:
summary: 'Manual review: identical protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:18467557
review:
summary: 'Manual review: identical protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:18719252
review:
summary: 'Manual review: identical protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0042802
label: identical protein binding
evidence_type: IPI
original_reference_id: PMID:21179020
review:
summary: 'Manual review: identical protein binding is too generic or over-extended for NAP1.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0140597
label: protein carrier chaperone
evidence_type: IDA
original_reference_id: PMID:31062022
review:
summary: 'Manual review: protein carrier chaperone is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0000511
label: H2A-H2B histone complex chaperone activity
evidence_type: IDA
original_reference_id: PMID:39601790
review:
summary: 'Manual review: H2A-H2B histone complex chaperone activity is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0006334
label: nucleosome assembly
evidence_type: IDA
original_reference_id: PMID:39601790
review:
summary: 'Manual review: nucleosome assembly is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0000511
label: H2A-H2B histone complex chaperone activity
evidence_type: IDA
original_reference_id: PMID:27225933
review:
summary: 'Manual review: H2A-H2B histone complex chaperone activity is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0006334
label: nucleosome assembly
evidence_type: IDA
original_reference_id: PMID:27225933
review:
summary: 'Manual review: nucleosome assembly is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0000920
label: septum digestion after cytokinesis
evidence_type: NAS
original_reference_id: PMID:12058072
review:
summary: 'Manual review: septum digestion after cytokinesis may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0000921
label: septin ring assembly
evidence_type: NAS
original_reference_id: PMID:12058072
review:
summary: 'Manual review: septin ring assembly may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0006607
label: NLS-bearing protein import into nucleus
evidence_type: IMP
original_reference_id: PMID:12456659
review:
summary: 'Manual review: NLS-bearing protein import into nucleus may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0042274
label: ribosomal small subunit biogenesis
evidence_type: IGI
original_reference_id: PMID:31062022
review:
summary: 'Manual review: ribosomal small subunit biogenesis may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0051082
label: unfolded protein binding
evidence_type: IDA
original_reference_id: PMID:31062022
review:
summary: 'Manual review: unfolded protein binding is better represented by a more specific replacement term for NAP1.'
action: MODIFY
reason: Modified to align with current curation guidance and improve term specificity.
proposed_replacement_terms:
- id: GO:0000511
label: H2A-H2B histone complex chaperone activity
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:30341817
review:
summary: 'Manual review: cytoplasm may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0032174
label: cellular bud neck septin collar
evidence_type: IDA
original_reference_id: PMID:30341817
review:
summary: 'Manual review: cellular bud neck septin collar may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0032153
label: cell division site
evidence_type: IDA
original_reference_id: PMID:25416945
review:
summary: 'Manual review: cell division site may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0098841
label: protein localization to cell division site after cytokinesis
evidence_type: IMP
original_reference_id: PMID:25416945
review:
summary: 'Manual review: protein localization to cell division site after cytokinesis may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0006334
label: nucleosome assembly
evidence_type: IDA
original_reference_id: PMID:1400414
review:
summary: 'Manual review: nucleosome assembly is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0008047
label: enzyme activator activity
evidence_type: IDA
original_reference_id: PMID:22308335
review:
summary: 'Manual review: enzyme activator activity may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0031116
label: positive regulation of microtubule polymerization
evidence_type: IMP
original_reference_id: PMID:7622567
review:
summary: 'Manual review: positive regulation of microtubule polymerization may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:7622566
review:
summary: 'Manual review: cytoplasm may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0006334
label: nucleosome assembly
evidence_type: IDA
original_reference_id: PMID:2016313
review:
summary: 'Manual review: nucleosome assembly is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0006337
label: nucleosome disassembly
evidence_type: IDA
original_reference_id: PMID:16492771
review:
summary: 'Manual review: nucleosome disassembly is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0007117
label: budding cell bud growth
evidence_type: IMP
original_reference_id: PMID:13680156
review:
summary: 'Manual review: budding cell bud growth may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0030332
label: cyclin binding
evidence_type: IPI
original_reference_id: PMID:7622566
review:
summary: 'Manual review: cyclin binding may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0032968
label: positive regulation of transcription elongation by RNA polymerase II
evidence_type: IDA
original_reference_id: PMID:22308335
review:
summary: 'Manual review: positive regulation of transcription elongation by RNA polymerase II may be context-dependent or peripheral for NAP1.'
action: KEEP_AS_NON_CORE
reason: Kept as non-core to preserve potentially valid context-specific annotation without elevating it to core function.
- term:
id: GO:0042393
label: histone binding
evidence_type: IDA
original_reference_id: PMID:17289584
review:
summary: 'Manual review: histone binding is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0042393
label: histone binding
evidence_type: IDA
original_reference_id: PMID:21348863
review:
summary: 'Manual review: histone binding is consistent with known biology of NAP1.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10688190
title: A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae.
findings: []
- id: PMID:11805837
title: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
findings: []
- id: PMID:12058072
title: Cell cycle-dependent assembly of a Gin4-septin complex.
findings: []
- id: PMID:12456659
title: A role for nucleosome assembly protein 1 in the nuclear transport of histones H2A and H2B.
findings: []
- id: PMID:13680156
title: Saccharomyces cerevisiae Ats1p interacts with Nap1p, a cytoplasmic protein that controls bud morphogenesis.
findings: []
- id: PMID:1400414
title: Functional analysis of nucleosome assembly protein, NAP-1. The negatively charged COOH-terminal region is not necessary for the intrinsic assembly activity.
findings: []
- id: PMID:14645854
title: ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex.
findings: []
- id: PMID:14759368
title: High-definition macromolecular composition of yeast RNA-processing complexes.
findings: []
- id: PMID:15045029
title: A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin.
findings: []
- id: PMID:16299494
title: A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery.
findings: []
- id: PMID:16429126
title: Proteome survey reveals modularity of the yeast cell machinery.
findings: []
- id: PMID:16432217
title: The structure of nucleosome assembly protein 1.
findings: []
- id: PMID:16492771
title: Chromatin remodeling by nucleosome disassembly in vitro.
findings: []
- id: PMID:16554755
title: Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.
findings: []
- id: PMID:17289584
title: Chz1, a nuclear chaperone for histone H2AZ.
findings: []
- id: PMID:18467557
title: An in vivo map of the yeast protein interactome.
findings: []
- id: PMID:18719252
title: High-quality binary protein interaction map of the yeast interactome network.
findings: []
- id: PMID:19172749
title: Histone chaperone specificity in Rtt109 activation.
findings: []
- id: PMID:19536198
title: 'An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell.'
findings: []
- id: PMID:2016313
title: Identification and molecular cloning of yeast homolog of nucleosome assembly protein I which facilitates nucleosome assembly in vitro.
findings: []
- id: PMID:20489023
title: A global protein kinase and phosphatase interaction network in yeast.
findings: []
- id: PMID:21179020
title: Defining the budding yeast chromatin-associated interactome.
findings: []
- id: PMID:21348863
title: Assembly states of the nucleosome assembly protein 1 (NAP-1) revealed by sedimentation velocity and non-denaturing MS.
findings: []
- id: PMID:22308335
title: Histone density is maintained during transcription mediated by the chromatin remodeler RSC and histone chaperone NAP1 in vitro.
findings: []
- id: PMID:23468594
title: A safeguard mechanism regulates Rho GTPases to coordinate cytokinesis with the establishment of cell polarity.
findings: []
- id: PMID:25416945
title: A memory system of negative polarity cues prevents replicative aging.
findings: []
- id: PMID:27225933
title: Structural evidence for Nap1-dependent H2A-H2B deposition and nucleosome assembly.
findings: []
- id: PMID:30341817
title: Septin-associated proteins Aim44 and Nis1 traffic between the bud neck and the nucleus in the yeast Saccharomyces cerevisiae.
findings: []
- id: PMID:31062022
title: Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME.
findings: []
- id: PMID:37968396
title: The social and structural architecture of the yeast protein interactome.
findings: []
- id: PMID:39601790
title: Nap1 and Kap114 co-chaperone H2A-H2B and facilitate targeted histone release in the nucleus.
findings: []
- id: PMID:7622566
title: Members of the NAP/SET family of proteins interact specifically with B-type cyclins.
findings: []
- id: PMID:7622567
title: NAP1 acts with Clb1 to perform mitotic functions and to suppress polar bud growth in budding yeast.
findings: []
- id: PMID:9214386
title: Control of mitotic events by Nap1 and the Gin4 kinase.
findings: []
- id: PMID:9813092
title: The septins are required for the mitosis-specific activation of the Gin4 kinase.
findings: []