TODO: Add description for PHO86
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0006817
phosphate ion transport
|
IEA
GO_REF:0000043 |
ACCEPT |
Summary: Manual review: phosphate ion transport is consistent with known biology of PHO86.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0016020
membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Manual review: membrane is consistent with known biology of PHO86.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0005515
protein binding
|
IPI
PMID:16429126 Proteome survey reveals modularity of the yeast cell machine... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for PHO86.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:18467557 An in vivo map of the yeast protein interactome. |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for PHO86.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:27107014 An inter-species protein-protein interaction network across ... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for PHO86.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005515
protein binding
|
IPI
PMID:37968396 The social and structural architecture of the yeast protein ... |
MARK AS OVER ANNOTATED |
Summary: Manual review: protein binding is too generic or over-extended for PHO86.
Reason: Marked over-annotated because more specific terms capture the biology more accurately.
|
|
GO:0005783
endoplasmic reticulum
|
HDA
PMID:26928762 One library to make them all: streamlining the creation of y... |
ACCEPT |
Summary: Manual review: endoplasmic reticulum is consistent with known biology of PHO86.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0005783
endoplasmic reticulum
|
IDA
PMID:10655492 Pho86p, an endoplasmic reticulum (ER) resident protein in Sa... |
ACCEPT |
Summary: Manual review: endoplasmic reticulum is consistent with known biology of PHO86.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0006457
protein folding
|
IMP
PMID:15623581 Specialized membrane-localized chaperones prevent aggregatio... |
ACCEPT |
Summary: Manual review: protein folding is consistent with known biology of PHO86.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0006888
endoplasmic reticulum to Golgi vesicle-mediated transport
|
IMP
PMID:10655492 Pho86p, an endoplasmic reticulum (ER) resident protein in Sa... |
ACCEPT |
Summary: Manual review: endoplasmic reticulum to Golgi vesicle-mediated transport is consistent with known biology of PHO86.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0010966
regulation of phosphate transport
|
IMP
PMID:10655492 Pho86p, an endoplasmic reticulum (ER) resident protein in Sa... |
ACCEPT |
Summary: Manual review: regulation of phosphate transport is consistent with known biology of PHO86.
Reason: Retained as supported or plausible for this gene and evidence context.
|
|
GO:0051082
unfolded protein binding
|
IMP
PMID:15623581 Specialized membrane-localized chaperones prevent aggregatio... |
MODIFY |
Summary: Manual review: unfolded protein binding is better represented by a more specific replacement term for PHO86.
Reason: Modified to align with current curation guidance and improve term specificity.
Proposed replacements:
protein folding chaperone
|
id: P46956
gene_symbol: PHO86
product_type: PROTEIN
status: DRAFT
taxon:
id: NCBITaxon:559292
label: Saccharomyces cerevisiae
description: 'TODO: Add description for PHO86'
existing_annotations:
- term:
id: GO:0006817
label: phosphate ion transport
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: 'Manual review: phosphate ion transport is consistent with known biology of PHO86.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0016020
label: membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: 'Manual review: membrane is consistent with known biology of PHO86.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16429126
review:
summary: 'Manual review: protein binding is too generic or over-extended for PHO86.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:18467557
review:
summary: 'Manual review: protein binding is too generic or over-extended for PHO86.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:27107014
review:
summary: 'Manual review: protein binding is too generic or over-extended for PHO86.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:37968396
review:
summary: 'Manual review: protein binding is too generic or over-extended for PHO86.'
action: MARK_AS_OVER_ANNOTATED
reason: Marked over-annotated because more specific terms capture the biology more accurately.
- term:
id: GO:0005783
label: endoplasmic reticulum
evidence_type: HDA
original_reference_id: PMID:26928762
review:
summary: 'Manual review: endoplasmic reticulum is consistent with known biology of PHO86.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0005783
label: endoplasmic reticulum
evidence_type: IDA
original_reference_id: PMID:10655492
review:
summary: 'Manual review: endoplasmic reticulum is consistent with known biology of PHO86.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0006457
label: protein folding
evidence_type: IMP
original_reference_id: PMID:15623581
review:
summary: 'Manual review: protein folding is consistent with known biology of PHO86.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0006888
label: endoplasmic reticulum to Golgi vesicle-mediated transport
evidence_type: IMP
original_reference_id: PMID:10655492
review:
summary: 'Manual review: endoplasmic reticulum to Golgi vesicle-mediated transport is consistent with known biology of PHO86.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0010966
label: regulation of phosphate transport
evidence_type: IMP
original_reference_id: PMID:10655492
review:
summary: 'Manual review: regulation of phosphate transport is consistent with known biology of PHO86.'
action: ACCEPT
reason: Retained as supported or plausible for this gene and evidence context.
- term:
id: GO:0051082
label: unfolded protein binding
evidence_type: IMP
original_reference_id: PMID:15623581
review:
summary: 'Manual review: unfolded protein binding is better represented by a more specific replacement term for PHO86.'
action: MODIFY
reason: Modified to align with current curation guidance and improve term specificity.
proposed_replacement_terms:
- id: GO:0044183
label: protein folding chaperone
references:
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
findings: []
- id: PMID:10655492
title: Pho86p, an endoplasmic reticulum (ER) resident protein in Saccharomyces cerevisiae, is required for ER exit of the high-affinity phosphate transporter Pho84p.
findings: []
- id: PMID:15623581
title: Specialized membrane-localized chaperones prevent aggregation of polytopic proteins in the ER.
findings: []
- id: PMID:16429126
title: Proteome survey reveals modularity of the yeast cell machinery.
findings: []
- id: PMID:18467557
title: An in vivo map of the yeast protein interactome.
findings: []
- id: PMID:26928762
title: 'One library to make them all: streamlining the creation of yeast libraries via a SWAp-Tag strategy.'
findings: []
- id: PMID:27107014
title: An inter-species protein-protein interaction network across vast evolutionary distance.
findings: []
- id: PMID:37968396
title: The social and structural architecture of the yeast protein interactome.
findings: []