PhnWX 2-aminoethylphosphonate degradation

A reusable two-reaction bacterial pathway that degrades 2-aminoethylphosphonate through phosphonoacetaldehyde. PhnW first transfers the amino group to pyruvate, producing L-alanine and phosphonoacetaldehyde. PhnX then hydrolytically cleaves the carbon-phosphorus bond, yielding acetaldehyde and inorganic phosphate. Transport of 2-aminoethylphosphonate and downstream acetaldehyde metabolism are outside the module boundary.

MODULE:2_aminoethylphosphonate_degradationDRAFTMetabolic Pathwaymodules/2_aminoethylphosphonate_degradation.yaml
organic phosphonate catabolic processGO:0019700
GO:0019700
organic phosphonate catabolic process
The GO process term supplies the pathway-level biological boundary.
file:PSEPK/phnW/phnW-uniprot.txt
UniProtKB entry for PSEPK PhnW
Q88KT0 supplies a reviewed PSEPK exemplar for the 2-aminoethylphosphonate:pyruvate transaminase reaction.
file:PSEPK/phnX/phnX-uniprot.txt
UniProtKB entry for PSEPK PhnX
Q88KT1 supplies a reviewed PSEPK exemplar for phosphonoacetaldehyde hydrolysis to acetaldehyde and phosphate.
file:projects/P_PUTIDA/deep-research/PSEPK__2-aminoethylphosphonate-degradation-by-phnwx__ppu00440-deep-research-openscientist.md
OpenScientist PSEPK PhnWX pathway satisfiability research
Provider-generated species/pathway research supports the narrow two-step module boundary, confirms that both reactions are covered in KT2440, and distinguishes the uncertain uptake and regulatory context from the core pathway.

The two exact UniProt exemplars are adjacent in KT2440 (PP_2208-PP_2209) and provide one representative for each required reaction. The module does not assume a specific transporter or regulatory system. Alternative phosphonoacetaldehyde-processing routes such as PhnWAY are separate variants rather than interchangeable with the PhnX hydrolysis step.

3Nodes
2Parts
0Variant Sets
0Variants
2Annotons
1Connections

Derived QC

Recommended-field compliance

84.2% recommended fields populated
  • knowledge_gaps[0].provenance[0] · reference_section_type (0/1)
  • knowledge_gaps[1].provenance[0] · reference_section_type (0/1)
  • knowledge_gaps[2].provenance[0] · reference_section_type (0/1)

Module deep research

✗ none found

No MODULE:2_aminoethylphosphonate_degradation deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Gene-review completeness (2/2 grounded genes reviewed)

2 complete review(s) · 2 with deep research · 0 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
phnW Q88KT0 ✓ ✓ ✓
phnX Q88KT1 ✓ ✓ ✓

Details

PhnWX 2-aminoethylphosphonate degradationMetabolic Pathway2_aminoethylphosphonate_degradation
organic phosphonate catabolic processGO:0019700

Connections

PhnW-generated phosphonoacetaldehyde is the direct substrate of PhnX.
Part 1: phosphonoacetaldehyde formation
2-aminoethylphosphonate transaminationReactionaep_transamination

Annotons

PhnW 2-aminoethylphosphonate:pyruvate transaminase
phnw_activity
Participant: Family: PhnW 2-aminoethylphosphonate transaminase subfamily
Family:
PhnW 2-aminoethylphosphonate transaminase subfamilyPANTHER:PTHR42778:SF1
Representative Members: PSEPK PhnWUniProtKB:Q88KT0
Required Function:
2-aminoethylphosphonate:pyruvate transaminase activityGO:0047304

Function

2-aminoethylphosphonate:pyruvate transaminase activityGO:0047304
Substrates: 2-aminoethylphosphonate pyruvate
Products: phosphonoacetaldehyde L-alanine

Processes

organic phosphonate catabolic processGO:0019700

Produces the phosphonoacetaldehyde substrate required by PhnX.

Part 2: carbon-phosphorus bond cleavage
Phosphonoacetaldehyde hydrolysisReactionphosphonoacetaldehyde_hydrolysis

Annotons

PhnX phosphonoacetaldehyde hydrolase
phnx_activity
Participant: Family: PhnX phosphonoacetaldehyde hydrolase subfamily
Family:
PhnX phosphonoacetaldehyde hydrolase subfamilyPANTHER:PTHR43434:SF19
Representative Members: PSEPK PhnXUniProtKB:Q88KT1
Required Function:
phosphonoacetaldehyde hydrolase activityGO:0050194

Function

phosphonoacetaldehyde hydrolase activityGO:0050194
Substrates: phosphonoacetaldehyde water
Products: acetaldehyde phosphate

Processes

organic phosphonate catabolic processGO:0019700

Releases inorganic phosphate and acetaldehyde from phosphonoacetaldehyde.