Function
Transfers an acetyl group from acetyl-CoA to L-serine to form O-acetyl-L-serine, the carbon skeleton consumed by the terminal sulfhydrylation step.
A reusable two-step bacterial pathway in which serine O-acetyltransferase (CysE) converts L-serine and acetyl-CoA to O-acetyl-L-serine, followed by a pyridoxal-phosphate-dependent O-acetylserine sulfhydrylase that incorporates sulfide to produce L-cysteine. OAS-active CysK or CysM proteins can implement the terminal reaction. The route is distributed across bacterial lineages, but neither the gene names nor broad family membership establish substrate choice. Thiosulfate incorporation produces S-sulfocysteine and requires a further reduction; it is adjacent chemistry rather than the direct sulfide route. A regulatory cysteine synthase complex forms in some lineages but is not a required pathway assembly. Upstream sulfide generation and distinct O-phosphoserine/sulfur-carrier pathways lie outside this module.
All recommended fields populated.
✗ none found
No MODULE:bacterial_cysteine_biosynthesis_via_o_acetylserine deep-research report alongside the module YAML.
✓ representative grounding skipped for abstract module.
✓ every declared conforms_to bundle matches its template motif.
✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.
15 gene-function check(s) reflected in core functions · 0 conflict(s) · 3 evidence or coverage gap(s) (19 comparison(s))
Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.
| Annoton | Participant | Function | Assessment |
|---|---|---|---|
| cysE_activity | CysE (Pseudomonas putida KT2440) UniProtKB:Q88PL0 Family Representative |
L-serine O-acetyltransferase activity GO:0009001 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysE_activity | CysE (Escherichia coli K-12) UniProtKB:P0A9D4 Family Representative |
L-serine O-acetyltransferase activity GO:0009001 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysE_activity | CysE (Pseudomonas aeruginosa PAO1) UniProtKB:Q9HXI6 Family Representative |
L-serine O-acetyltransferase activity GO:0009001 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysE_activity | CysE (Campylobacter jejuni NCTC 11168) UniProtKB:Q0PAC7 Family Representative |
L-serine O-acetyltransferase activity GO:0009001 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysE_activity | CysE (Bacillus subtilis 168) UniProtKB:Q06750 Family Representative |
L-serine O-acetyltransferase activity GO:0009001 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysE_activity | CysE (Mycobacterium tuberculosis H37Rv) UniProtKB:P95231 Family Representative |
L-serine O-acetyltransferase activity GO:0009001 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysK_activity | CysK (Pseudomonas putida KT2440) UniProtKB:Q88E95 Family Representative |
cysteine synthase activity GO:0004124 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysK_activity | CysK (Escherichia coli K-12) UniProtKB:P0ABK5 Family Representative |
cysteine synthase activity GO:0004124 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysK_activity | CysK (Pseudomonas aeruginosa PAO1) UniProtKB:Q9I0D3 Family Representative |
cysteine synthase activity GO:0004124 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysK_activity | CysK (Bacillus subtilis 168) UniProtKB:P37887 Family Representative |
cysteine synthase activity GO:0004124 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysK_activity | CysK1 (Mycobacterium tuberculosis H37Rv) UniProtKB:P9WP55 Family Representative |
cysteine synthase activity GO:0004124 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysM_activity | CysM (Pseudomonas putida KT2440) UniProtKB:Q88MC0 Family Representative |
cysteine synthase activity GO:0004124 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysM_activity | CysM (Escherichia coli K-12) UniProtKB:P16703 Family Representative |
cysteine synthase activity GO:0004124 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysM_activity | CysM (Pseudomonas aeruginosa PAO1) UniProtKB:Q9I526 Family Representative |
cysteine synthase activity GO:0004124 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| unplaced_oas_sulfhydrylase_activity | CysM/Cj0912c (Campylobacter jejuni NCTC 11168) UniProtKB:P71128 Family Representative |
cysteine synthase activity GO:0004124 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| cysE_activity | Serine acetyltransferase (CysE) family PANTHER:PTHR42811 Family |
L-serine O-acetyltransferase activity GO:0009001 |
Family Supported
Family review supports GO:0009001 FAMILY_WIDE. Placed by PAINT at the family node with no recorded loss; bacterial, protist and plant members alike are serine acetyltransferases. The bacterial cysteine biosynthesis module grounds this step on the narrower InterPro CysE entry (IPR005881), which the PANTHER family contains. |
| cysK_activity | CysK-type O-acetylserine sulfhydrylase (cysteine synthase A) PANTHER:PTHR10314 Family |
cysteine synthase activity GO:0004124 |
Family Function Unreviewed
Family review leaves GO:0004124 UNRESOLVED. Exact OAS plus free sulfide cysteine synthase activity is supported in particular bacterial CysK, OAS-active CysM and eukaryotic OAS-TL members. PAINT places it at PTN000034535, PTN008497439 and PTN000034468, respectively. The broader cysteine-biosynthesis BP at the family root does not establish ancestral OAS substrate chemistry. SF194 includes both CBS and CysK proteins; SF162 includes OAS-active CysM proteins and OPS/CysO-specialized M. tuberculosis P9WP53, whose complete OAS/free-sulfide turnover remains unresolved. Neither family nor subfamily alone therefore defines a safe scope for this exact activity. Positive node and member evidence is retained. CBS proteins, threonine synthases and SF135 cysteine desulfhydrases have distinct demonstrated functions; the former scope-carving member entries are archived verbatim in the notes. This is not a claim that cysteine synthase activity is false family-wide. The exact historical exception objects and a separate P9WP53 over-annotation case are restored in the linked structured scope proof. They cannot be placed in active member_exceptions under UNRESOLVED without violating current checker semantics. SF194 is not a safe wholesale substitute: it also includes the CBS clade; the eukaryotic OAS-TL node spans 28 subfamilies. This unresolved enum describes the coarse family/subfamily boundary, not doubt about the supported E. coli or PAO1 activities. |
| cysM_activity | CysM-type O-acetylserine sulfhydrylase (cysteine synthase B) PANTHER:PTHR10314 Family |
cysteine synthase activity GO:0004124 |
Family Function Unreviewed
Family review leaves GO:0004124 UNRESOLVED. Exact OAS plus free sulfide cysteine synthase activity is supported in particular bacterial CysK, OAS-active CysM and eukaryotic OAS-TL members. PAINT places it at PTN000034535, PTN008497439 and PTN000034468, respectively. The broader cysteine-biosynthesis BP at the family root does not establish ancestral OAS substrate chemistry. SF194 includes both CBS and CysK proteins; SF162 includes OAS-active CysM proteins and OPS/CysO-specialized M. tuberculosis P9WP53, whose complete OAS/free-sulfide turnover remains unresolved. Neither family nor subfamily alone therefore defines a safe scope for this exact activity. Positive node and member evidence is retained. CBS proteins, threonine synthases and SF135 cysteine desulfhydrases have distinct demonstrated functions; the former scope-carving member entries are archived verbatim in the notes. This is not a claim that cysteine synthase activity is false family-wide. The exact historical exception objects and a separate P9WP53 over-annotation case are restored in the linked structured scope proof. They cannot be placed in active member_exceptions under UNRESOLVED without violating current checker semantics. SF194 is not a safe wholesale substitute: it also includes the CBS clade; the eukaryotic OAS-TL node spans 28 subfamilies. This unresolved enum describes the coarse family/subfamily boundary, not doubt about the supported E. coli or PAO1 activities. |
| unplaced_oas_sulfhydrylase_activity | Experimentally supported OAS/sulfide enzyme within PTHR10314; exact PAINT branch unresolved PANTHER:PTHR10314 Family |
cysteine synthase activity GO:0004124 |
Family Function Unreviewed
Family review leaves GO:0004124 UNRESOLVED. Exact OAS plus free sulfide cysteine synthase activity is supported in particular bacterial CysK, OAS-active CysM and eukaryotic OAS-TL members. PAINT places it at PTN000034535, PTN008497439 and PTN000034468, respectively. The broader cysteine-biosynthesis BP at the family root does not establish ancestral OAS substrate chemistry. SF194 includes both CBS and CysK proteins; SF162 includes OAS-active CysM proteins and OPS/CysO-specialized M. tuberculosis P9WP53, whose complete OAS/free-sulfide turnover remains unresolved. Neither family nor subfamily alone therefore defines a safe scope for this exact activity. Positive node and member evidence is retained. CBS proteins, threonine synthases and SF135 cysteine desulfhydrases have distinct demonstrated functions; the former scope-carving member entries are archived verbatim in the notes. This is not a claim that cysteine synthase activity is false family-wide. The exact historical exception objects and a separate P9WP53 over-annotation case are restored in the linked structured scope proof. They cannot be placed in active member_exceptions under UNRESOLVED without violating current checker semantics. SF194 is not a safe wholesale substitute: it also includes the CBS clade; the eukaryotic OAS-TL node spans 28 subfamilies. This unresolved enum describes the coarse family/subfamily boundary, not doubt about the supported E. coli or PAO1 activities. |
14 complete review(s) · 1 with deep research · 0 missing review · 14 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| cysE P0A9D4 | ✓ | ✓ | ✗ |
| cysE P95231 | ✓ | ✓ | ✗ |
| cysE Q06750 | ✓ | ✓ | ✗ |
| cysE Q0PAC7 | ✓ | ✓ | ✗ |
| cysE Q88PL0 | ✓ | ✓ | ✗ |
| cysE Q9HXI6 | ✓ | ✓ | ✗ |
| cysK P0ABK5 | ✓ | ✓ | ✗ |
| cysK P37887 | ✓ | ✓ | ✗ |
| cysK Q88E95 | ✓ | ✓ | ✓ |
| cysK Q9I0D3 | ✓ | ✓ | ✗ |
| cysK1 P9WP55 | ✓ | 13/14 | ✗ |
| cysM P16703 | ✓ | ✓ | ✗ |
| cysM P71128 | ✓ | ✓ | ✗ |
| cysM Q88MC0 | ✓ | ✓ | ✗ |
| cysM Q9I526 | ✓ | ✓ | ✗ |
The taxon context denotes a reusable bacterial route, not universal possession or dependence. Sulfate uptake and reduction supply sulfide upstream. Thiosulfate incorporation into OAS produces S-sulfocysteine and requires downstream reduction, so it cannot silently replace the stated sulfide chemistry. CysK and CysM names describe diverse proteins: mycobacterial CysM prefers O-phosphoserine and CysO thiocarboxylate, whereas Campylobacter CysM uses OAS and strongly favors sulfide. Minor in-vitro side reactions do not automatically define a physiological module implementation. The cysteine synthase complex is regulatory context: CysE-tail occupation inhibits the CysK active site, and the enterobacterial interaction cannot be assumed in Pseudomonas or Bacillus. PTHR42811 grounds serine acetyltransferase; heterogeneous PTHR10314 contains both relevant OAS enzymes and proteins with other substrates/functions. PAINT node membership must therefore be combined with a gene review that establishes the route-specific core activity. The CysK node PTN000034535 includes bacterial CysK exemplars, but CysM node PTN008497439 also contains M. tuberculosis P9WP53; it cannot alone qualify a native OAS-route implementation. Absence of a representative from the cached tree is not evidence for absence of family membership. Campylobacter Cj0912c is retained as an explicitly unplaced OAS-active alternative: its CysM symbol and CysK-like signature do not establish either existing PAINT node. Fifteen positive member exemplars span E. coli, Pseudomonas, Bacillus, Campylobacter and Mycobacterium; a sixteenth gene review assesses Mtb CysM as a mechanistically distinct comparator. Mtb regulatory-complex formation has direct support in PMID:38311199, but exact full-length construct and assembly details remain unresolved; its CysE activity is reduced, so regulatory direction is not universal. Bacillus instead has directly demonstrated CymR-CysK regulation, while tested CysE-CysK association is negative. Quoted biochemical results, genetic evidence, family inference and construct/strain limits are distinguished. An intact enzyme panel describes supported capacity, not measured native flux or whole-genome completeness.
Transfers an acetyl group from acetyl-CoA to L-serine to form O-acetyl-L-serine, the carbon skeleton consumed by the terminal sulfhydrylation step.
PLP-dependent incorporation of sulfide into O-acetyl-L-serine to produce L-cysteine.
Alternative PLP-dependent OAS/sulfide chemistry established for the reviewed CysM proteins in this branch. Assayed PAO1 CysM also favors thiosulfate, yielding S-sulfocysteine; donor preference is not assumed for unassayed KT2440 CysM. Neither the name nor PTHR10314/SF162 membership qualifies the OPS/CysO route of mycobacterial CysM. The Campylobacter implementation has unresolved PAINT placement and is represented separately.
NCTC11168 Cj0912c, named CysM, is directly assayed as an OAS/sulfide enzyme and has the CysK-associated IPR005859 signature. Neither name nor signature establishes descent from PTN000034535 or PTN008497439; this implementation remains unplaced relative to those nodes. It uses the same reaction, not a new tissue- or organism-specific pathway.