Bacterial gallate catabolism by the GalA-D-B-C route

A reusable bacterial module for oxidative cleavage of gallate and conversion of the ring-opened product to pyruvate and oxaloacetate. An optional outer-membrane porin can facilitate substrate entry. GalA then cleaves the aromatic ring to the keto tautomer of 4-oxalomesaconate, GalD supplies the enol tautomer used by GalB, GalB hydrates that intermediate to 4-carboxy-4-hydroxy-2-oxoadipate, and GalC performs the terminal aldol cleavage. Regulation and downstream central metabolism are outside the module boundary.

MODULE:bacterial_gallate_catabolismDRAFTCONCRETEMetabolic Pathwaymodules/bacterial_gallate_catabolism.yaml
gallate catabolic processGO:0019396
PMID:16030014
Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440. The prototype of a new subgroup of extradiol dioxygenases.
Biochemical characterization establishes the Fe(II)-dependent GalA gallate ring-cleavage reaction that initiates the pathway.
PMID:21219457
Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida
Genetic and biochemical analysis establishes the GalA, GalD, GalB, and GalC sequence and connects the terminal products to central metabolism; homologous gal clusters outside Pseudomonas support a bacterial rather than KT2440-only scope.

GalP is optional because its porin activity and outer-membrane location are supported, but direct gallate specificity and pathway essentiality are not. The module begins chemically at extracellular or periplasm-accessible gallate and ends at pyruvate plus oxaloacetate. GalR regulation, the GalT inner-membrane transporter candidate, and metabolism of the terminal products are adjacent context rather than additional core reactions. Continuity of the GalA-D-B-C chain was manually verified against RHEA:28927, RHEA:28931, RHEA:17401, and RHEA:28935; the current derived chaining check is CoA-specific and does not evaluate these non-CoA intermediates.

6Nodes
5Parts
0Variant Sets
0Variants
5Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:bacterial_gallate_catabolism deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Gene-review completeness (5/5 grounded genes reviewed)

5 complete review(s) · 5 with deep research · 0 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
galA Q88JX5 ✓ ✓ ✓
galB Q88JX8 ✓ ✓ ✓
galC Q88JX9 ✓ ✓ ✓
galD Q88JY0 ✓ ✓ ✓
galP Q88JX6 ✓ ✓ ✓

Details

Context
bacteriaNCBITaxon:2
Bacterial gallate catabolism by the GalA-D-B-C routeMetabolic Pathwaybacterial_gallate_catabolism
gallate catabolic processGO:0019396
Context
bacteriaNCBITaxon:2

Connections

GalP-associated uptake can improve access of gallate-pathway substrate to the catalytic route.
GalA produces the keto tautomer processed by GalD.
GalD produces the enol tautomer used by GalB.
GalB produces CHA for terminal GalC cleavage.
Part 1: optional outer-membrane substrate entry (optional)
GalP-associated outer-membrane entryTransport Stepgallate_outer_membrane_entry

Annotons

Gallate-cluster outer-membrane porin
galp_outer_membrane_porin
Participant: Family: experimentally supported gallate-cluster GalP ortholog family
Family:
experimentally supported gallate-cluster GalP ortholog family Porin activity alone is not family-specific; the verified Q88JX6 exemplar anchors this selector to the gallate-cluster GalP lineage.
Representative Members: PSEPK GalPUniProtKB:Q88JX6
Required Function:
porin activityGO:0015288

Function

porin activityGO:0015288

Processes

transmembrane transportGO:0055085

Locations

cell outer membraneGO:0009279

Provides a porin route associated with gallate utilization. The transported substrate is deliberately not asserted as gallate.

Part 2: gallate ring cleavage
GalA gallate ring cleavageReactiongallate_dioxygenation

Annotons

Gallate dioxygenase
gala_gallate_dioxygenase
Participant: Family: experimentally supported GalA gallate dioxygenase family
Family:
experimentally supported GalA gallate dioxygenase family
Representative Members: PSEPK GalAUniProtKB:Q88JX5
Required Function:
gallate dioxygenase activityGO:0036238

Function

gallate dioxygenase activityGO:0036238
Substrates: gallate molecular oxygen
Products: 4-oxalomesaconate keto tautomer

Processes

gallate catabolic processGO:0019396

Fe(II)-dependent extradiol cleavage opens the gallate ring.

Part 3: ring-cleavage product tautomerization
GalD oxalomesaconate tautomerizationReactionoxalomesaconate_tautomerization

Annotons

4-oxalomesaconate tautomerase
gald_oxalomesaconate_tautomerase
Participant: Family: experimentally supported GalD 4-oxalomesaconate tautomerase family
Family:
experimentally supported GalD 4-oxalomesaconate tautomerase family GO:0016863 is broad; the verified Q88JY0 exemplar anchors this selector to the GalD 4-oxalomesaconate-tautomerase lineage.
Representative Members: PSEPK GalDUniProtKB:Q88JY0
Required Function:
intramolecular oxidoreductase activity, transposing C=C bondsGO:0016863

Function

4-oxalomesaconate tautomerizationGO:0016863
Substrates: 4-oxalomesaconate keto tautomer
Products: 4-oxalomesaconate enol tautomer

Processes

gallate catabolic processGO:0019396

Supplies the enol tautomer accepted by GalB.

Part 4: oxalomesaconate hydration
GalB oxalomesaconate hydrationReactionoxalomesaconate_hydration

Annotons

4-oxalomesaconate hydratase
galb_oxalomesaconate_hydratase
Participant: Family: experimentally supported GalB 4-oxalomesaconate hydratase family
Family:
experimentally supported GalB 4-oxalomesaconate hydratase family
Representative Members: PSEPK GalBUniProtKB:Q88JX8
Required Function:
4-oxalmesaconate hydratase activityGO:0047584

Function

4-oxalmesaconate hydratase activityGO:0047584
Substrates: 4-oxalomesaconate enol tautomer water
Products: 4-carboxy-4-hydroxy-2-oxoadipate

Processes

gallate catabolic processGO:0019396

Hydrates the GalD-generated enol intermediate to CHA.

Part 5: terminal carbon-carbon cleavage
GalC terminal aldol cleavageReactioncha_aldol_cleavage

Annotons

4-carboxy-4-hydroxy-2-oxoadipate aldolase
galc_cha_aldolase
Participant: Family: experimentally supported GalC CHA aldolase family
Family:
experimentally supported GalC CHA aldolase family
Representative Members: PSEPK GalCUniProtKB:Q88JX9
Required Function:
4-hydroxy-4-methyl-2-oxoglutarate aldolase activityGO:0047443

Function

4-carboxy-4-hydroxy-2-oxoadipate aldol cleavageGO:0047443
Substrates: 4-carboxy-4-hydroxy-2-oxoadipate
Products: pyruvate oxaloacetate

Processes

gallate catabolic processGO:0019396

Cleaves CHA into pyruvate and oxaloacetate. GO:0047443 is the current EC-mapped term but does not name the physiological CHA substrate explicitly.