Function
Processes
Generates persulfide sulfur transferred to the IscU scaffold.
A bacterial Isc mechanism for iron-sulfur cluster assembly and transfer supported by Isc ferredoxin and the dedicated HscBA cycle. IscS mobilizes cysteine sulfur as a persulfide and supplies IscU, the transient cluster scaffold. Reduced Isc ferredoxin supplies reducing equivalents; HscB recruits IscU to the HscA ATPase, coupling ATP hydrolysis to cluster release and delivery. An optional IscA carrier branch supports condition- and client-dependent iron or cluster handling. Reduced anaerobic ISC implementations and scaffold-suppressor bypasses are comparative boundary cases outside the encoded Fdx-supported, HscBA-assisted profile; their altered requirements are not additional modeled variants here. IscR regulation, CyaY and IscX modulation, upstream iron and reductant supply, mitochondrial ISC, and the separate Suf and Nif systems lie outside this mechanism.
The modeled capacity is the canonical Fdx-supported, HscBA-assisted route. IscS, IscU, Fdx, HscB and HscA are required for that profile, not asserted universally necessary for all ISC-dependent synthesis. In E. coli lacking SUF, loss of Fdx can be tolerated anaerobically; the same primary study retains a requirement for wild-type IscS, IscU, HscB and HscA in that assay. Separate IscU suppressor substitutions partially bypass HscBA. These are distinct condition/genotype boundaries, not proof that unmodified IscSU alone supplies every client. Alternative electron-carrier identity remains unresolved. IscA is optional at this nascent-cluster/transfer boundary, without claiming dispensability for all aerobic clients or elevated-oxygen Azotobacter growth. Bacteria is a distribution envelope, not universal conservation. The reviewed panel samples E. coli, P. putida and A. vinelandii within Gammaproteobacteria; it does not establish experimentally complete coverage across bacterial phyla. The Azotobacter sequences match the original AF010139 deposit; DJ116 sequence origin and subsequent DJ-derived experimental strains are distinguished in the member map. Five Azotobacter representatives support the canonical profile. Housekeeping IscA O31271 remains a reviewed comparator: broad binding and native participation do not establish its exact cluster-delivery chemistry, and NifIscA experiments are not transferred to it. Evidence strength differs by role and species. Native Azotobacter Fdx redox measurements, specific ISC signatures and depletion phenotypes support an inferred donor role by comparison with E. coli mechanism. Its native donor/acceptor chain is not reconstituted. In the Azotobacter HscBA assay, apo-Fdx is a cluster recipient, not evidence of electron donation. KT2440 roles also rely on comparative inference. A supported/inferred capacity profile must be distinguished from an assay-only cognate electron-relay profile. Available iron, L-cysteine, ATP and reduced ferredoxin are inputs. The physiological iron donor and loading order remain unresolved; reductase/reduced-ferredoxin supply is upstream. IscA is not the sole asserted iron source, and no fixed IscU-to-IscA ordering is encoded. Purified IscA iron donation and intact cluster delivery are distinct molecular claims. HscA family/subfamily descriptors are alternative classifications of one role, not two required proteins. HscA contributes ATP hydrolysis coupled to IscU transfer; HscB contributes ATPase activation and scaffold recruitment. Neither role automatically establishes generic folding/refolding. Broad Hsp70, J-domain, ferredoxin or IscU/SufU-family membership alone is insufficient. Family reviews retain unresolved universal function scopes, while representative-specific functions and cognate interfaces ground this module.
All recommended fields populated.
✗ none found
No MODULE:bacterial_isc_iron_sulfur_cluster_assembly deep-research report alongside the module YAML.
✓ every leaf node grounds to a representative protein.
✓ every declared conforms_to bundle matches its template motif.
17 gene-function check(s) reflected in core functions · 0 conflict(s) · 3 evidence or coverage gap(s) (24 comparison(s))
Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.
| Annoton | Participant | Function | Assessment |
|---|---|---|---|
| iscs_cysteine_desulfurase | iscS (Escherichia coli K-12) UniProtKB:P0A6B7 Family Representative |
cysteine desulfurase activity GO:0031071 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| iscs_cysteine_desulfurase | iscS (Pseudomonas putida KT2440) UniProtKB:Q88PK8 Family Representative |
cysteine desulfurase activity GO:0031071 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| iscs_cysteine_desulfurase | iscS (Azotobacter vinelandii) UniProtKB:O31269 Family Representative |
cysteine desulfurase activity GO:0031071 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| iscu_cluster_scaffold | iscU (Escherichia coli K-12) UniProtKB:P0ACD4 Family Representative |
iron-sulfur cluster chaperone activity GO:0140132 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| iscu_cluster_scaffold | iscU (Pseudomonas putida KT2440) UniProtKB:Q88PK7 Family Representative |
iron-sulfur cluster chaperone activity GO:0140132 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| iscu_cluster_scaffold | iscU (Azotobacter vinelandii) UniProtKB:O31270 Family Representative |
iron-sulfur cluster chaperone activity GO:0140132 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| isc_ferredoxin | fdx (Escherichia coli K-12) UniProtKB:P0A9R4 Family Representative |
electron transfer activity GO:0009055 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| isc_ferredoxin | fdx (Pseudomonas putida KT2440) UniProtKB:Q88PK3 Family Representative |
electron transfer activity GO:0009055 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| isc_ferredoxin | fdx (Azotobacter vinelandii) UniProtKB:O69222 Family Representative |
electron transfer activity GO:0009055 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hscb_cochaperone | hscB (Escherichia coli K-12) UniProtKB:P0A6L9 Family Representative |
ATPase activator activity GO:0001671 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hscb_cochaperone | hscB (Pseudomonas putida KT2440) UniProtKB:Q88PK5 Family Representative |
ATPase activator activity GO:0001671 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hscb_cochaperone | hscB (Azotobacter vinelandii) UniProtKB:O69220 Family Representative |
ATPase activator activity GO:0001671 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsca_chaperone_atpase | hscA (Escherichia coli K-12) UniProtKB:P0A6Z1 Family Representative |
ATP hydrolysis activity GO:0016887 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsca_chaperone_atpase_family_level | hscA (Pseudomonas putida KT2440) UniProtKB:Q88PK4 Family Representative |
ATP hydrolysis activity GO:0016887 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsca_chaperone_atpase_family_level | hscA (Azotobacter vinelandii) UniProtKB:O69221 Family Representative |
ATP hydrolysis activity GO:0016887 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| isca_cluster_carrier | iscA (Escherichia coli K-12) UniProtKB:P0AAC8 Family Representative |
iron-sulfur cluster chaperone activity GO:0140132 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| isca_cluster_carrier | iscA (Pseudomonas putida KT2440) UniProtKB:Q88PK6 Family Representative |
iron-sulfur cluster chaperone activity GO:0140132 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| iscs_cysteine_desulfurase | IscS/NFS1-type group I cysteine desulfurase subfamily PANTHER:PTHR11601:SF34 Family |
cysteine desulfurase activity GO:0031071 |
Family Supported
Family review supports GO:0031071 for PANTHER:PTHR11601:SF34. Cysteine desulfurase activity is experimentally established for SF34 members in bacteria (E. coli IscS) and eukaryotes (NFS1) and is the shared chemistry of the small bacterial SF36 and SF50 groups. It is excluded from the selenocysteine lyase subfamily SF62, which is specific for L-selenocysteine. |
| iscu_cluster_scaffold | IscU/NifU-type Fe-S cluster scaffold family PANTHER:PTHR10093 Family |
iron-sulfur cluster chaperone activity GO:0140132 |
Family Function Unreviewed
Family review leaves GO:0140132 UNRESOLVED. Cluster binding and delivery are established for characterized IscU/NifU/ISU scaffolds; the E. coli multiple-turnover evidence remains positive. A universal family grant is unjustified because the verified member B. subtilis SufU O32163 is a zinc-dependent sulfur-transfer protein in PMID24321018, and PMID29292548 genetically places cluster assembly on SufBCD rather than SufU. Earlier PMID20097860 reported reconstitution and transfer from SufU to Leu1, which is retained as conflicting biochemical evidence rather than erased. The present evidence favors distinct physiological SufU and IscU roles without establishing a clean PANTHER subfamily boundary or a universal negative for every SufU-like member. No negative member exception or phylogenetic loss event is manufactured. |
| isc_ferredoxin | FDX2-type (Isc-associated) [2Fe-2S] ferredoxin subfamily PANTHER:PTHR23426:SF65 Family |
electron transfer activity GO:0009055 |
Family Supported
Family review supports GO:0009055 FAMILY_WIDE. Asserted by ubiquinone_biosynthesis for YAH1 and by the bacterial Isc module for bacterial Fdx; accepted by the YAH1, E. coli Fdx and P. putida Fdx reviews. |
| hscb_cochaperone | HscB J-type co-chaperone subfamily PANTHER:PTHR14021:SF15 Family |
ATPase activator activity GO:0001671 |
Family Supported
Family review supports GO:0001671 FAMILY_WIDE. J-domain stimulation of the partner Hsp70 ATPase is demonstrated for E. coli HscB and yeast Jac1 and depends on the HPD motif conserved throughout the family. |
| hsca_chaperone_atpase | HscA dedicated Fe-S cluster Hsp70 chaperone PANTHER:PTHR19375:SF176 Family |
ATP hydrolysis activity GO:0016887 |
Family Function Unreviewed
The family review has no applicable adjudication supporting or excluding GO:0016887. |
| hsca_chaperone_atpase_family_level | HscA ortholog classified only at the HSP70 family level PANTHER:PTHR19375 Family |
ATP hydrolysis activity GO:0016887 |
Family Function Unreviewed
The family review has no applicable adjudication supporting or excluding GO:0016887. |
| isca_cluster_carrier | IscA/ISCA1-type A-type carrier subfamily PANTHER:PTHR10072:SF41 Family |
iron-sulfur cluster chaperone activity GO:0140132 |
Family Supported
Family review supports GO:0140132 for PANTHER:PTHR10072:SF41. Cluster binding and transfer to acceptor apoproteins is shown for E. coli IscA (SF41) and is the shared role of SufA (SF47) and mitochondrial ISCA1 (SF41). The plant ISCA-like 3 group (SF60) has not been characterized and is left out. |
6 complete review(s) · 2 with deep research · 0 missing review · 15 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| fdx O69222 | ✓ | 5/6 | ✗ |
| fdx P0A9R4 | ✓ | ✓ | ✗ |
| fdx Q88PK3 | ✓ | ✓ | ✗ |
| hscA O69221 | ✓ | 3/4 | ✗ |
| hscA P0A6Z1 | ✓ | 19/21 | ✗ |
| hscA Q88PK4 | ✓ | 4/5 | ✗ |
| hscB O69220 | ✓ | 5/6 | ✗ |
| hscB P0A6L9 | ✓ | 12/13 | ✗ |
| hscB Q88PK5 | ✓ | 5/6 | ✗ |
| iscA P0AAC8 | ✓ | 20/21 | ✗ |
| iscA Q88PK6 | ✓ | ✓ | ✓ |
| iscS O31269 | ✓ | 6/7 | ✗ |
| iscS P0A6B7 | ✓ | 39/41 | ✗ |
| iscS Q88PK8 | ✓ | 5/6 | ✓ |
| iscU O31270 | ✓ | ✓ | ✗ |
| iscU P0ACD4 | ✓ | ✓ | ✗ |
| iscU Q88PK7 | ✓ | ✓ | ✗ |
Generates persulfide sulfur transferred to the IscU scaffold.
Provides the transient scaffold on which a nascent Fe-S cluster forms.
Supplies reducing equivalents used during nascent cluster assembly.
Recognizes cluster-bearing IscU and stimulates HscA ATPase activity.
These describe alternative classifications of one biological role, not two required chaperones. Family-level assignment does not license an arbitrary DnaK/Hsp70 replacement. This distinction is representational, not a claim of separate evolutionary origin.
Uses ATP hydrolysis to remodel IscU and promote cluster release.
Uses ATP hydrolysis to remodel IscU and promote cluster release.
Binds iron and [2Fe-2S] clusters and supports late cluster delivery to target apoproteins; whether IscA acts mainly as an alternative scaffold, an iron donor or a carrier downstream of IscU is unresolved.