Bacterial lipopolysaccharide transport

Reusable Gram-negative bacterial module for ATP-driven extraction of lipopolysaccharide (LPS) from the outer leaflet of the inner membrane, transfer across the periplasmic Lpt bridge, and insertion into the outer leaflet of the outer membrane. The module separates the LptB2FGC inner- membrane machine, soluble LptA bridge, and LptDE outer-membrane translocon.

MODULE:bacterial_lps_transportDRAFTCONCRETEBiological Processmodules/bacterial_lps_transport.yaml
lipopolysaccharide transportGO:0015920
GO:0015920
lipopolysaccharide transport
GO:0015920 grounds movement of LPS through the trans-envelope Lpt system.
GO:1990351
transporter complex
GO:1990351 (transporter complex) is the term the LptD and LptE gene reviews use for the outer-membrane LptD/LptE assembly; GO has no dedicated lipopolysaccharide transport complex term.
KEGG:ppu00540
Pseudomonas putida KT2440 lipopolysaccharide biosynthesis
KEGG ppu00540 includes the KT2440 Lpt components associated with LPS biogenesis and export.

P. putida genes PP_0982 and PP_0983 encode the LptF and LptG permease subunits but lack standard lpt gene symbols in UniProt. Biosynthetic enzymes and LPS core/O-antigen assembly are outside this transport module.

4Nodes
3Parts
0Variant Sets
0Variants
7Annotons
2Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:bacterial_lps_transport deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Gene-review completeness (7/7 grounded genes reviewed)

7 complete review(s) · 0 with deep research · 0 missing review · 7 reviewed but lacking deep research

Gene Review Complete Deep research
lptA Q88P98 ✓ ✓ ✗
lptB Q88P99 ✓ ✓ ✗
lptC Q88P97 ✓ ✓ ✗
lptD A0A140FVZ0 ✓ ✓ ✗
lptE Q88DN0 ✓ ✓ ✗
PP_0982 Q88P71 ✓ ✓ ✗
PP_0983 Q88P70 ✓ ✓ ✗

Details

Context
bacteriaNCBITaxon:2
LPS transport from inner to outer membraneBiological Processbacterial_lps_transport
lipopolysaccharide transportGO:0015920
Context
bacteriaNCBITaxon:2

Connections

Part 1: ATP-driven LPS extraction from the inner membrane
LptB2FGC inner-membrane extraction machineProtein Complexinner_membrane_lptb2fgc

Cytosolic LptB ATPases energize the LptF/LptG permease. LptC couples the inner-membrane machine to the periplasmic transport bridge.

Annotons

LptB ATPase
lptb_atpase
Participant: Family: LptB family
Family:
LptB familyPANTHER:PTHR45772:SF10
Representative Members: PSEPK LptB exemplarUniProtKB:Q88P99

Function

ATP hydrolysis activityGO:0016887

Supplies the conformational energy that extracts LPS from the inner membrane and advances it into the bridge.

LptF permease subunit
lptf_permease
Participant: Family: LptF permease subfamily
Family:
LptF permease subfamilyPANTHER:PTHR33529:SF7
Representative Members: PSEPK PP_0982 LptF exemplarUniProtKB:Q88P71

Locations

plasma membraneGO:0005886

One half of the LptFG inner-membrane transmembrane cavity.

LptG permease subunit
lptg_permease
Participant: Family: LptG permease subfamily
Family:
LptG permease subfamilyPANTHER:PTHR33529:SF2
Representative Members: PSEPK PP_0983 LptG exemplarUniProtKB:Q88P70

Locations

plasma membraneGO:0005886

One half of the LptFG inner-membrane transmembrane cavity.

LptC bridge anchor
lptc_bridge_anchor
Participant: Family: LptC family
Family:
LptC familyPANTHER:PTHR37481
Representative Members: PSEPK LptC exemplarUniProtKB:Q88P97

Function

lipopolysaccharide transfer activityGO:0140332

Locations

plasma membraneGO:0005886

Receives extracted LPS and connects LptFG to LptA.

Part 2: periplasmic transfer across the Lpt bridge
LptA periplasmic bridgeTransport Stepperiplasmic_lpta_bridge

LptA proteins form a hydrophobic groove that extends the LptC/LptD beta-jellyroll bridge across the periplasm.

Annotons

LptA bridge protein
lpta_bridge
Participant: Family: LptA family
Family:
LptA familyPANTHER:PTHR36504
Representative Members: PSEPK LptA exemplarUniProtKB:Q88P98

Locations

outer membrane-bounded periplasmic spaceGO:0030288

Transfers LPS through the periplasmic bridge.

Part 3: LPS insertion into the outer membrane
LptD/LptE outer-membrane transloconProtein Complexouter_membrane_lptde

LptD forms the outer-membrane beta-barrel and lateral exit, while the LptE lipoprotein forms the lumenal plug and supports translocon assembly.

Annotons

LptD beta-barrel translocon
lptd_outer_membrane_translocon
Participant: Family: LptD family
Family:
LptD familyPANTHER:PTHR30189:SF1
Representative Members: PSEPK LptD exemplarUniProtKB:A0A140FVZ0

Locations

cell outer membraneGO:0009279

Accepts LPS from the bridge and inserts it laterally into the outer membrane.

LptE translocon lipoprotein
lpte_translocon_plug
Participant: Family: LptE family
Family:
LptE familyPANTHER:PTHR38098
Representative Members: PSEPK LptE exemplarUniProtKB:Q88DN0

Locations

cell outer membraneGO:0009279

Forms the lumenal plug within LptD and supports assembly and operation of the outer-membrane translocon.