Bacterial undecaprenyl-phosphate carrier supply

A reusable bacterial module that supplies the C55 polyprenyl-phosphate lipid carrier used for cell-envelope glycan assembly. UppS first elongates farnesyl diphosphate with eight isopentenyl diphosphates to form undecaprenyl diphosphate. An integral-membrane undecaprenyl-diphosphatase then removes one phosphate to generate undecaprenyl phosphate. The carrier supports multiple pathways, including peptidoglycan and lipopolysaccharide synthesis; transfer of pathway-specific sugars onto the carrier and downstream glycan polymerization are outside this module.

MODULE:bacterial_undecaprenyl_phosphate_carrier_supplyDRAFTBiological Processmodules/bacterial_undecaprenyl_phosphate_carrier_supply.yaml
polyprenol biosynthetic processGO:0016094
GO:0008834
ditrans,polycis-undecaprenyl-diphosphate synthase activity
Defines synthesis of the C55 undecaprenyl-diphosphate precursor.
GO:0050380
undecaprenyl-diphosphatase activity
Defines hydrolysis of undecaprenyl diphosphate to undecaprenyl phosphate.
file:PSEPK/uppP/uppP-deep-research-openscientist.md
OpenScientist gene research for PSEPK UppP
The report supports Q88IY7 as a catalytically competent UppP/BacA-family enzyme while distinguishing ortholog-derived topology and possible flippase claims from established KT2440 evidence.
file:projects/P_PUTIDA/deep-research/PSEPK__bacterial_undecaprenyl_phosphate_carrier_supply__ppu00550-deep-research-openscientist.md
OpenScientist PSEPK carrier-supply satisfiability review
The two canonical steps are satisfiable with uppS/Q88MH6 and uppP/Q88IY7; PP_0251, PP_0900, and PP_4813 are uncertain PAP2-family redundancy candidates that must not receive blanket GO:0050380 transfer.

The module represents carrier supply, not a peptidoglycan-specific pathway: C55-P is shared by several bacterial envelope-glycan systems. The same phosphatase reaction also returns carrier released as C55-PP after glycan transfer to the usable C55-P pool. PTHR10291:SF0 is asserted with its exact divergent official label "DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE 2" because PANTHER places both declared bacterial UppS exemplars in that subfamily; preferred_term states the intended bacterial role. Species-aware research also identifies three PAP2-family candidate phosphatases, but their broad family membership is insufficient to assign undecaprenyl-diphosphatase activity.

3Nodes
2Parts
0Variant Sets
0Variants
2Annotons
1Connections

Derived QC

Recommended-field compliance

60.0% recommended fields populated
  • module.knowledge_gaps[0] · status (0/1)
  • module.knowledge_gaps[0] · provenance (0/1)

Module deep research

✗ none found

No MODULE:bacterial_undecaprenyl_phosphate_carrier_supply deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Gene-review completeness (2/4 grounded genes reviewed)

1 complete review(s) · 1 with deep research · 2 missing review · 1 reviewed but lacking deep research

Gene Review Complete Deep research
Escherichia coli UppS P60472 ✗ — —
Escherichia coli UppP/BacA P60932 ✗ — —
uppP Q88IY7 ✓ ✓ ✓
uppS Q88MH6 ✓ 7/8 ✗

Details

Context
bacteriaNCBITaxon:2
Bacterial undecaprenyl-phosphate carrier supplyBiological Processbacterial_undecaprenyl_phosphate_carrier_supply
polyprenol biosynthetic processGO:0016094
Context
bacteriaNCBITaxon:2

Connections

UppS-derived C55-PP is the substrate for carrier-activating dephosphorylation.
Part 1: undecaprenyl-diphosphate synthesis
Undecaprenyl-diphosphate synthesisReactionundecaprenyl_diphosphate_synthesis

Annotons

UppS undecaprenyl-diphosphate synthase
upps_c55_prenyltransferase
Participant: Family: bacterial UppS undecaprenyl-diphosphate synthases
Family:
bacterial UppS undecaprenyl-diphosphate synthasesPANTHER:PTHR10291:SF0
Representative Members: PSEPK UppSUniProtKB:Q88MH6 Escherichia coli UppSUniProtKB:P60472

Function

ditrans,polycis-undecaprenyl-diphosphate synthase activityGO:0008834
Substrates: (2E,6E)-farnesyl diphosphate isopentenyl diphosphate
Products: di-trans,octa-cis-undecaprenyl diphosphate diphosphate

Processes

polyprenol biosynthetic processGO:0016094

Produces the C55 diphosphate precursor of the bacterial glycan carrier.

Part 2: undecaprenyl-phosphate formation
Undecaprenyl-phosphate formationReactionundecaprenyl_phosphate_formation

Annotons

UppP/BacA undecaprenyl-diphosphatase
uppp_undecaprenyl_diphosphatase
Participant: Family: UppP/BacA undecaprenyl-diphosphatases
Family:
UppP/BacA undecaprenyl-diphosphatasesPANTHER:PTHR30622:SF3
Representative Members: PSEPK UppPUniProtKB:Q88IY7 Escherichia coli UppP/BacAUniProtKB:P60932

Function

undecaprenyl-diphosphatase activityGO:0050380
Substrates: di-trans,octa-cis-undecaprenyl diphosphate water
Products: di-trans,octa-cis-undecaprenyl phosphate phosphate

Processes

polyprenol biosynthetic processGO:0016094

Generates the monophosphate carrier accepted by pathway-specific glycosyltransferases.