Brassinosteroid signal perception and relay to BZR1/BES1 transcription factors

Brassinosteroid (BR) signalling converts perception of a steroid hormone at the cell surface into a change in nuclear gene expression through a chain of phosphorylation and dephosphorylation steps. In the absence of BR, the receptor kinase BRI1 is held inactive by its cytoplasmic inhibitor BKI1, and the constitutively active GSK3-like kinase BIN2 phosphorylates the BZR1 and BES1 transcription factors, which inhibits their DNA binding, promotes 14-3-3 binding and cytoplasmic retention, and targets them for degradation. Brassinolide binds the extracellular LRR domain of BRI1, which recruits the coreceptor kinase BAK1; transphosphorylation activates BRI1, which phosphorylates BKI1 (releasing it from the membrane) and the receptor-like cytoplasmic kinases BSK1 (and CDG1). Phosphorylated BSK1 binds the Kelch-repeat phosphatase BSU1, which (after CDG1 phosphorylation) dephosphorylates the conserved pTyr200 of BIN2 and inactivates it. With BIN2 off, PP2A dephosphorylates BZR1/BES1, which accumulate in the nucleus and bind BRRE and E-box elements to repress BR biosynthetic genes (feedback) and activate or repress thousands of growth-related genes. BR biosynthesis, receptor endocytosis/turnover, and downstream transcriptional networks are outside this module's boundary.

MODULE:brassinosteroid_signalingDRAFTCONCRETESignaling Pathwaymodules/brassinosteroid_signaling.yaml
brassinosteroid mediated signaling pathwayGO:0009742
PMID:19734888
Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors.
Establishes the connected relay BRI1 -> BSK1 -> BSU1 -| BIN2 -| BZR1/BZR2.
These results demonstrate direct sequential BR activation of BRI1, BSK1 and BSU1, and inactivation of BIN2, leading to accumulation of unphosphorylated BZR (brassinazole resistant) transcription factors in the nucleus.
PMID:21855796
The CDG1 kinase mediates brassinosteroid signal transduction from BRI1 receptor kinase to BSU1 phosphatase and GSK3-like kinase BIN2.
A parallel RLCK (CDG1) also relays BRI1 output to BSU1 by phosphorylating Ser764.
CDG1 in turn phosphorylates S764 to activate BSU1, which inactivates BIN2 by dephosphorylating Y200 of BIN2.
PMID:16857903
Brassinosteroids regulate dissociation of BKI1, a negative regulator of BRI1 signaling, from the plasma membrane.
BKI1 restrains BRI1 and limits BRI1-BAK1 association until BR is perceived.
BKI1 is a substrate of BRI1 kinase and limits the interaction of BRI1 with its proposed coreceptor, BAK1, suggesting that BKI1 prevents the activation of BRI1.
PMID:12007405
BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation.
The pathway resembles Wnt signalling, with a GSK3 inactivated to allow nuclear accumulation of a transcriptional regulator.
These results establish a signaling cascade for BRs with similarities to the Wnt pathway, in which signaling through cell surface receptors leads to inactivation of a GSK-3 allowing accumulation of a nuclear protein that regulates target gene expression.
file:ARATH/BRI1/BRI1-ai-review.yaml
BRI1 receptor and kinase core functions.
file:ARATH/BAK1/BAK1-ai-review.yaml
BAK1 coreceptor kinase core function.
file:ARATH/BKI1/BKI1-ai-review.yaml
BKI1 protein kinase inhibitor core function.
file:ARATH/BSK1/BSK1-ai-review.yaml
BSK1 receptor-like cytoplasmic kinase relay function.
file:ARATH/BSU1/BSU1-ai-review.yaml
BSU1 protein tyrosine phosphatase activity on BIN2 pTyr200.
file:ARATH/BIN2/BIN2-ai-review.yaml
BIN2 GSK3-like Ser/Thr kinase negative regulator.
file:ARATH/BZR1/BZR1-ai-review.yaml
BZR1 DNA-binding transcription factor.
file:ARATH/BES1/BES1-ai-review.yaml
BES1 DNA-binding transcription factor.

Grounded on Arabidopsis thaliana proteins; each step has paralogous families (BRI1/BRL1/BRL3, SERK1-5, BSK1-12, BSU1/BSL1-3, BIN2/BIL1/BIL2 and other group-II GSK3s, BZR1/BES1/BEH1-4), so the single named members are exemplars, not an exhaustive list. CDG1/CDL1 (parallel RLCK relay to BSU1), PP2A (dephosphorylation of BZR1), KIB1 (BR-induced degradation of BIN2) and 14-3-3 proteins (cytoplasmic retention of phosphorylated BZR1/BES1) are described in the module description but not modelled as parts because their gene reviews are not part of this batch. BSK1 catalytic activity is debated (BSK8 structures suggest pseudokinase behaviour), and BSK1 promotes BSU1 activity in vivo without a demonstrated direct effect in vitro; the BSK1 -> BSU1 connection is therefore a positive regulatory link, not an asserted enzymatic activation. BRI1 annoton uses its reviewed core function (signaling receptor activity); a brassinosteroid-binding-specific receptor MF could be considered on the BRI1 review. No production GO-CAM in gocams/index.tsv contains these Arabidopsis proteins.

7Nodes
6Parts
0Variant Sets
0Variants
8Annotons
6Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:brassinosteroid_signaling deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

8 gene-function check(s) reflected in core functions · 0 conflict(s) · 0 evidence or coverage gap(s) (8 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
bki1_inhibitor BKI1
UniProtKB:Q9FMZ0
Gene
protein kinase inhibitor activity
GO:0004860
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
bri1_receptor BRI1
UniProtKB:O22476
Gene
protein serine/threonine kinase activity
GO:0004674
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
bak1_coreceptor BAK1
UniProtKB:Q94F62
Gene
transmembrane receptor protein serine/threonine kinase activity
GO:0004675
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
bsk1_relay_kinase BSK1
UniProtKB:Q944A7
Gene
protein kinase activity
GO:0004672
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
bsu1_ptp BSU1
UniProtKB:Q9LR78
Gene
protein tyrosine phosphatase activity
GO:0004725
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
bin2_gsk3 BIN2
UniProtKB:Q39011
Gene
protein serine/threonine kinase activity
GO:0004674
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
bzr1_tf BZR1
UniProtKB:Q8S307
Gene
DNA-binding transcription factor activity
GO:0003700
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
bes1_tf BES1
UniProtKB:Q9LN63
Gene
DNA-binding transcription factor activity
GO:0003700
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).

Feedback loops (advisory, prose-driven: a regulator counts as "feedback" when its own description says so)

✓ every negative regulator described as feedback has an upstream edge closing the loop.

  • receptor_inhibition ⊣ receptor_activation [input]
    receptor_inhibition is a negative regulator with no upstream edge (not described as feedback)
  • receptor_activation ⊣ receptor_inhibition [input]
    receptor_activation is a negative regulator with no upstream edge (not described as feedback)
  • bsu1_phosphatase ⊣ bin2_kinase [closed]
    bsu1_phosphatase is regulated by bsk_relay: feedback loop closed
  • bin2_kinase ⊣ bzr_transcription [input]
    bin2_kinase is a negative regulator with no upstream edge (not described as feedback)

Gene-review completeness (8/8 grounded genes reviewed)

8 complete review(s) · 3 with deep research · 0 missing review · 5 reviewed but lacking deep research

Gene Review Complete Deep research
BAK1 Q94F62 ✓ ✓ ✓
BES1 Q9LN63 ✓ ✓ ✗
BIN2 Q39011 ✓ ✓ ✗
BKI1 Q9FMZ0 ✓ ✓ ✗
BRI1 O22476 ✓ ✓ ✓
BSK1 Q944A7 ✓ ✓ ✗
BSU1 Q9LR78 ✓ ✓ ✗
BZR1 Q8S307 ✓ ✓ ✓

Details

Context
Arabidopsis thalianaNCBITaxon:3702
Brassinosteroid signaling (BRI1 to BZR1/BES1)Signaling Pathwaybrassinosteroid_signaling
brassinosteroid mediated signaling pathwayGO:0009742
Context
Arabidopsis thalianaNCBITaxon:3702

Connections

receptor_inhibition -> receptor_activation Negatively Regulates
BKI1 binds the BRI1 kinase domain and limits BRI1-BAK1 association.
receptor_activation -> receptor_inhibition Negatively Regulates
Activated BRI1 phosphorylates BKI1, releasing it from the plasma membrane.
receptor_activation -> bsk_relay Positively Regulates
BRI1 phosphorylates BSK1 at Ser230 (and CDG1 at Ser234).
bsk_relay -> bsu1_phosphatase Positively Regulates
Phosphorylated BSK1 binds BSU1, promoting BSU1 action on BIN2 in vivo.
bsu1_phosphatase -> bin2_kinase Negatively Regulates
BSU1 dephosphorylates BIN2 pTyr200, inactivating the kinase.
bin2_kinase -> bzr_transcription Negatively Regulates
BIN2 phosphorylation of BZR1/BES1 inhibits DNA binding and promotes 14-3-3 binding, nuclear export and degradation.
Part 1: receptor restraint by BKI1
BKI1 inhibition of the unliganded BRI1 receptorRegulatory Stepreceptor_inhibition

In the absence of BR, membrane-anchored BKI1 binds the BRI1 kinase domain and blocks recruitment of BAK1. BR-activated BRI1 phosphorylates BKI1, releasing it into the cytosol.

Annotons

BKI1: BRI1 kinase inhibitor
bki1_inhibitor
Participant: Gene Product: BKI1
Gene Product:

Function

protein kinase inhibitor activityGO:0004860

Processes

negative regulation of brassinosteroid mediated signaling pathwayGO:1900458

Locations

plasma membraneGO:0005886

Holds BRI1 inactive until BR binding triggers its phosphorylation and membrane release.

Part 2: hormone perception and receptor complex activation
BRI1-BAK1 receptor complex activationRegulatory Stepreceptor_activation

Brassinolide binds the extracellular LRR/island domain of BRI1, which then associates with the coreceptor BAK1 (SERK3); sequential transphosphorylation activates the BRI1 kinase.

Annotons

BRI1: brassinosteroid receptor kinase
bri1_receptor
Participant: Gene Product: BRI1
Gene Product:

Function

protein serine/threonine kinase activityGO:0004674

Processes

brassinosteroid mediated signaling pathwayGO:0009742

Locations

plasma membraneGO:0005886

Binds brassinolide and phosphorylates BKI1, BSK1 and CDG1.

BAK1: coreceptor kinase
bak1_coreceptor
Participant: Gene Product: BAK1
Gene Product:

Function

transmembrane receptor protein serine/threonine kinase activityGO:0004675

Processes

brassinosteroid mediated signaling pathwayGO:0009742

Locations

plasma membraneGO:0005886

Ligand-dependent coreceptor that transphosphorylates and fully activates BRI1.

Part 3: cytoplasmic kinase relay
BSK1 phosphorylation by BRI1Regulatory Stepbsk_relay

BRI1 phosphorylates the plasma-membrane-anchored RLCK BSK1 at Ser230, which promotes BSK1 binding to BSU1. The parallel RLCK CDG1 is phosphorylated by BRI1 and phosphorylates BSU1 Ser764.

Annotons

BSK1: BR-signaling receptor-like cytoplasmic kinase
bsk1_relay_kinase
Participant: Gene Product: BSK1
Gene Product:

Function

protein kinase activityGO:0004672

Processes

brassinosteroid mediated signaling pathwayGO:0009742

Locations

plasma membraneGO:0005886

Receives the receptor phosphorylation signal and recruits BSU1; kinase activity contribution is debated (possible pseudokinase scaffold).

Part 4: GSK3 inactivation by tyrosine dephosphorylation
BSU1 dephosphorylation of BIN2 pTyr200Regulatory Stepbsu1_phosphatase

The Kelch-repeat PPP phosphatase BSU1, promoted by phosphorylated BSK1 and activated by CDG1 phosphorylation of Ser764, dephosphorylates the conserved activation-loop pTyr200 of BIN2, inactivating the kinase. BSU1 does not effectively dephosphorylate BZR1/BES1 directly.

Annotons

BSU1: Kelch-repeat phosphatase
bsu1_ptp
Participant: Gene Product: BSU1
Gene Product:

Function

protein tyrosine phosphatase activityGO:0004725

Processes

positive regulation of brassinosteroid mediated signaling pathwayGO:1900459

Locations

nucleusGO:0005634 plasma membraneGO:0005886

Removes the activating pTyr200 of BIN2 (and related GSK3s), switching BIN2 off.

Part 5: GSK3 negative regulation of BZR transcription factors
BIN2 phosphorylation of BZR1/BES1Regulatory Stepbin2_kinase

Active BIN2 phosphorylates BZR1/BES1, inhibiting DNA binding and promoting 14-3-3 binding, nuclear export and degradation. BR also triggers KIB1-mediated degradation of BIN2.

Annotons

BIN2: GSK3/SHAGGY-like kinase
bin2_gsk3
Participant: Gene Product: BIN2
Gene Product:

Function

protein serine/threonine kinase activityGO:0004674

Processes

negative regulation of brassinosteroid mediated signaling pathwayGO:1900458

Locations

nucleusGO:0005634 cytoplasmGO:0005737

Keeps BZR1/BES1 phosphorylated and inactive in the absence of BR.

Part 6: transcriptional output
BZR1/BES1-mediated BR-responsive transcriptionRegulatory Stepbzr_transcription

Dephosphorylated BZR1 and BES1 accumulate in the nucleus and bind BRRE (CGTGT/CG) and E-box elements to repress BR biosynthetic genes and activate or repress growth-related genes.

Annotons

BZR1: BZR-family transcription factor
bzr1_tf
Participant: Gene Product: BZR1
Gene Product:

Function

DNA-binding transcription factor activityGO:0003700

Processes

brassinosteroid mediated signaling pathwayGO:0009742

Locations

nucleusGO:0005634

Represses BR biosynthetic genes (feedback) and regulates growth genes.

BES1/BZR2: BZR-family transcription factor
bes1_tf
Participant: Gene Product: BES1
Gene Product:

Function

DNA-binding transcription factor activityGO:0003700

Processes

brassinosteroid mediated signaling pathwayGO:0009742

Locations

nucleusGO:0005634

Activates BR-induced genes (with BIM1) and represses BR-repressed genes.