Carnitine shuttle (mitochondrial import of long-chain fatty acids)

The carnitine shuttle is the system that imports long-chain fatty acids into the mitochondrial matrix for beta-oxidation. Long-chain acyl-CoA cannot cross the inner mitochondrial membrane, so it is transiently converted to acylcarnitine, transported across the membrane, and converted back to acyl-CoA inside the matrix. First, the plasma-membrane sodium-dependent carnitine transporter SLC22A5 (OCTN2) imports L-carnitine into the cell (and mediates its renal reabsorption), supplying the carnitine pool. Carnitine palmitoyltransferase 1 (CPT1; the liver isoform is CPT1A), on the mitochondrial OUTER membrane, catalyses the committed, rate-limiting, malonyl-CoA-inhibited step: transfer of a long-chain acyl group from acyl-CoA to carnitine, giving long-chain acylcarnitine + CoA. The carnitine/acylcarnitine translocase SLC25A20 (CACT), an SLC25 carrier of the INNER membrane, then antiports acylcarnitine into the matrix in exchange for free carnitine. Finally carnitine palmitoyltransferase 2 (CPT2), on the matrix face of the inner membrane, reverses the CPT1 reaction — regenerating long-chain acyl-CoA (and releasing carnitine, which CACT recycles back out) so that beta-oxidation can proceed. Inherited defects of each component cause fatty-acid-oxidation disorders that typically present with hypoketotic hypoglycemia, cardiomyopathy/arrhythmia and/or myopathy: SLC22A5 → primary (systemic) carnitine deficiency; CPT1A → CPT1A deficiency; SLC25A20 → carnitine- acylcarnitine translocase deficiency; CPT2 → CPT2 deficiency (the myopathic form is a common cause of exercise-induced rhabdomyolysis).

MODULE:carnitine_shuttleDRAFTMetabolic Pathwaymodules/carnitine_shuttle.yaml
carnitine shuttleGO:0006853
GO:0006853
carnitine shuttle
The module is grounded in the GO carnitine shuttle biological process (GO:0006853); every step is annotated within it and it feeds fatty acid beta-oxidation (GO:0006635).
Reactome:R-HSA-200425
Carnitine shuttle
Step order and reaction directions follow the human Reactome "Carnitine shuttle" pathway (R-HSA-200425): R-HSA-165026 (SLC22A5 uptake), R-HSA-200406 (CPT1A), R-HSA-200424 (SLC25A20 antiport) and R-HSA-200410 (CPT2).
file:human/SLC22A5/SLC22A5-ai-review.yaml
SLC22A5 gene review (human)
The plasma-membrane carnitine-uptake step (UniProtKB:O76082, GO:0015226 carnitine transmembrane transporter activity) matches the completed human SLC22A5/OCTN2 review.
file:human/CPT1A/CPT1A-ai-review.yaml
CPT1A gene review (human)
The CPT1 step grounding (UniProtKB:P50416, GO:0004095 carnitine O-palmitoyltransferase activity, mitochondrial outer membrane) matches the completed human CPT1A review.
file:human/SLC25A20/SLC25A20-ai-review.yaml
SLC25A20 gene review (human)
The carnitine/acylcarnitine translocase step (UniProtKB:O43772, GO:0015227 O-acyl-L-carnitine transmembrane transporter activity, inner membrane) matches the completed human SLC25A20 review.
file:human/CPT2/CPT2-ai-review.yaml
CPT2 gene review (human)
The CPT2 step grounding (UniProtKB:P23786, GO:0004095 carnitine O-palmitoyltransferase activity, inner membrane) matches the completed human CPT2 review.
5Nodes
4Parts
0Variant Sets
0Variants
4Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:carnitine_shuttle deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (4/4 grounded genes reviewed)

3 complete review(s) · 1 with deep research · 0 missing review · 3 reviewed but lacking deep research

Gene Review Complete Deep research
CPT1A P50416
CPT2 P23786
SLC22A5 O76082 87/89
SLC25A20 O43772

Details

Context
plasma membraneGO:0005886 mitochondrial outer membraneGO:0005741 mitochondrial inner membraneGO:0005743
Carnitine shuttleMetabolic Pathwaycarnitine_shuttle
carnitine shuttleGO:0006853
Context
plasma membraneGO:0005886 mitochondrial outer membraneGO:0005741 mitochondrial inner membraneGO:0005743

Four-component carnitine shuttle for mitochondrial long-chain fatty-acid import, grounded to the human proteins SLC22A5/OCTN2 (UniProtKB:O76082, GO:0015226), CPT1A (P50416, GO:0004095, EC 2.3.1.21), SLC25A20/CACT (O43772, GO:0015227) and CPT2 (P23786, GO:0004095, EC 2.3.1.21). GO molecular-function/cellular-component terms were taken from the human GOA records; Reactome reaction ids and titles were verified against the local reactome cache. Each step uses a PANTHER family selector (generic over paralogs and orthologs) plus a concrete human representative member; CPT1A and CPT2 both belong to the carnitine O-acyltransferase family (PTHR22589), which also includes the tissue-specific CPT1B/CPT1C isoforms and the medium/short-chain and peroxisomal carnitine acyltransferases CRAT and CROT (not modelled here). Downstream, the regenerated matrix long-chain acyl-CoA enters mitochondrial fatty-acid beta-oxidation (GO:0006635; see the fatty_acid_beta_oxidation module).

Connections

slc22a5_step -> cpt1_step Provides Input For
SLC22A5 supplies the cytosolic L-carnitine that CPT1 uses to acylate long-chain acyl-CoA.
cpt1_step -> slc25a20_step Provides Input For
Acylcarnitine made by CPT1 is imported into the matrix by SLC25A20.
slc25a20_step -> cpt2_step Provides Input For
Matrix acylcarnitine delivered by SLC25A20 is converted back to acyl-CoA by CPT2.
cpt2_step -> slc25a20_step Provides Input For
Free carnitine released by CPT2 is exported by SLC25A20 (the antiport counter-substrate), recycling carnitine and closing the shuttle.
Part 1: cellular carnitine uptake (supplies the carnitine pool)
L-carnitine import across the plasma membrane (Na+-dependent)Transport Stepslc22a5_step

Annotons

SLC22A5/OCTN2: Na+-dependent carnitine transporter
slc22a5_activity
Participant: Family: Solute carrier family 22 (organic cation/carnitine transporter, OCTN) (SLC22A5)
Family:
Solute carrier family 22 (organic cation/carnitine transporter, OCTN) (SLC22A5)PANTHER:PTHR24064
Representative Members: SLC22A5 / OCTN2 (human)UniProtKB:O76082

Function

carnitine transmembrane transporter activityGO:0015226
Substrates: L-carnitine (extracellular) sodium ion (cotransported)
Products: L-carnitine (cytosol)

Locations

plasma membraneGO:0005886

High-affinity, sodium-dependent plasma-membrane carnitine importer (also polyspecific for organic cations); supplies the cellular carnitine used by the shuttle and mediates renal carnitine reabsorption. Deficiency causes primary (systemic) carnitine deficiency.

Part 2: committed, rate-limiting acyl transfer to carnitine (outer membrane)
long-chain acyl-CoA + L-carnitine to long-chain acylcarnitine + CoAReactioncpt1_step

Annotons

CPT1A: carnitine palmitoyltransferase 1 (liver)
cpt1a_activity
Participant: Family: Carnitine O-acyltransferase family (CPT1/CPT2/CRAT/CROT)
Family:
Carnitine O-acyltransferase family (CPT1/CPT2/CRAT/CROT)PANTHER:PTHR22589
Representative Members: CPT1A (human, liver isoform)UniProtKB:P50416

Function

carnitine O-palmitoyltransferase activityGO:0004095
Substrates: long-chain acyl-CoA L-carnitine
Products: long-chain O-acylcarnitine coenzyme A

Locations

mitochondrial outer membraneGO:0005741

Committed, rate-limiting step of long-chain fatty-acid oxidation, allosterically inhibited by malonyl-CoA (linking to lipogenesis). Converts acyl-CoA to acylcarnitine on the outer membrane. Deficiency causes CPT1A deficiency (hypoketotic hypoglycemia). Muscle/brain use the CPT1B/CPT1C isoforms.

Part 3: acylcarnitine/carnitine antiport across the inner membrane
acylcarnitine (cytosolic) / carnitine (matrix) antiportTransport Stepslc25a20_step

Annotons

SLC25A20/CACT: carnitine-acylcarnitine translocase
slc25a20_activity
Participant: Family: Mitochondrial carnitine/acylcarnitine carrier family (SLC25A20)
Family:
Mitochondrial carnitine/acylcarnitine carrier family (SLC25A20)PANTHER:PTHR45624
Representative Members: SLC25A20 / CACT (human)UniProtKB:O43772

Function

O-acyl-L-carnitine transmembrane transporter activityGO:0015227
Substrates: long-chain acylcarnitine (intermembrane space) L-carnitine (matrix)
Products: long-chain acylcarnitine (matrix) L-carnitine (intermembrane space)

Locations

mitochondrial inner membraneGO:0005743

Inner-membrane antiporter that imports acylcarnitine into the matrix in exchange for exporting the free carnitine released by CPT2, coupling the two CPT reactions. Deficiency causes carnitine-acylcarnitine translocase deficiency (severe neonatal FAO disorder).

Part 4: regeneration of matrix acyl-CoA (completes the shuttle)
long-chain acylcarnitine + CoA to long-chain acyl-CoA + L-carnitineReactioncpt2_step

Annotons

CPT2: carnitine palmitoyltransferase 2
cpt2_activity
Participant: Family: Carnitine O-acyltransferase family (CPT1/CPT2/CRAT/CROT)
Family:
Carnitine O-acyltransferase family (CPT1/CPT2/CRAT/CROT)PANTHER:PTHR22589
Representative Members: CPT2 (human)UniProtKB:P23786

Function

carnitine O-palmitoyltransferase activityGO:0004095
Substrates: long-chain O-acylcarnitine (matrix) coenzyme A
Products: long-chain acyl-CoA L-carnitine

Locations

mitochondrial inner membraneGO:0005743

Matrix-facing inner-membrane transferase that reverses the CPT1 reaction, regenerating long-chain acyl-CoA for beta-oxidation and releasing carnitine for recycling by SLC25A20. Deficiency causes CPT2 deficiency (myopathic form: exercise-induced rhabdomyolysis).