Mitotic cell cycle progression (phase-transition control)

An umbrella module that composes the three irreversible, cyclin-CDK-gated phase transitions of the mitotic cell cycle into one cycle: (1) the G1/S transition (Start / restriction point), at which growth-coupled G1 cyclin-CDK releases the G1/S transcription program and SCF-dependent destruction of the CDK inhibitor commits the cell to S phase (MODULE:g1_s_transition); (2) the G2/M transition, at which the Wee1 / Cdc25 switch activates cyclin B-CDK1 and commits the cell to mitosis (MODULE:g2_m_transition); and (3) the metaphase/anaphase transition and mitotic exit, at which SAC-gated APC/C-Cdc20 destroys securin and the mitotic cyclins, separase cleaves cohesin, and a CDK-counteracting phosphatase resets the G1 state (MODULE:metaphase_anaphase_transition_and_mitotic_exit). The unifying logic is a single oscillator of cyclin-dependent kinase activity - rising from Start through mitotic entry and collapsing at mitotic exit - whose thresholds are made irreversible by positive-feedback proteolysis (SCF at G1/S, APC/C at M/A and exit) and by mutual antagonism between CDK and its inhibitors (CKIs, Wee1, PP2A-B55). Each part here is a compact summary node that names the phase-specific cyclin-CDK holoenzyme and the proteolytic switch; the detailed decompositions live in the three referenced modules. Representative members are drawn from human, Saccharomyces cerevisiae and Schizosaccharomyces pombe. Grounded in GO:0044772 (mitotic cell cycle phase transition).

MODULE:cell_cycle_progressionDRAFTCONCRETEBiological Processmodules/cell_cycle_progression.yaml
mitotic cell cycle phase transitionGO:0044772 mitotic cell cycleGO:0000278
GO:0044772
mitotic cell cycle phase transition
The umbrella is grounded in the GO term for mitotic cell cycle phase transitions.
GO:0000278
mitotic cell cycle
The composed cycle is the mitotic cell cycle.
file:modules/g1_s_transition.yaml
G1/S transition of the mitotic cell cycle (Start / restriction point)
Detailed decomposition of part 1.
file:modules/g2_m_transition.yaml
G2/M transition of the mitotic cell cycle (mitotic entry)
Detailed decomposition of part 2.
file:modules/metaphase_anaphase_transition_and_mitotic_exit.yaml
Metaphase/anaphase transition and mitotic exit (APC/C-driven)
Detailed decomposition of part 3.
PMID:9442875
Cyclin-dependent kinases: engines, clocks, and microprocessors
Review establishing cyclin-CDK complexes as the engine that orders the phase transitions of the cell cycle.
PMID:4587263
Genetic control of the cell division cycle in yeast
The cdc mutant collection of budding yeast defined the dependent sequence of cell-cycle events and the concept of Start.
PMID:1165770
Genetic control of cell size at cell division in yeast
The wee mutants of fission yeast identified the G2/M size control and the cdc2/wee1 genes.
PMID:3553962
Complementation used to clone a human homologue of the fission yeast cell cycle control gene cdc2
Human CDK1 complements fission-yeast cdc2, establishing that the CDK engine is conserved from yeast to human and justifying the shared representative-member scheme used here.
PMID:18813291
Cyclin-dependent kinases and cell-cycle transitions: does one fit all?
Review of the quantitative CDK-activity model in which a single CDK can order S phase and mitosis, and of the metazoan division of labour among CDK4/6, CDK2 and CDK1.
PMID:21179163
Driving the cell cycle with a minimal CDK control network
A single cyclin-CDK fusion suffices to drive ordered S phase and mitosis in fission yeast, supporting the oscillator model that unifies the three transitions.
PMID:19884882
Cyclin-dependent kinases: a family portrait
Nomenclature and phylogeny of the CDK family across eukaryotes.
PMID:17912263
Finishing mitosis, one step at a time
Review of the ordered proteolysis and dephosphorylation events that close the cycle.

This umbrella deliberately stays at the level of the three transitions and their cyclic ordering; it does not model S-phase execution (origin licensing and firing, DNA replication), mitotic execution (spindle assembly, chromosome condensation, cytokinesis) or the checkpoint pathways that feed into each transition, each of which is or will be a separate module. The three part nodes intentionally duplicate the phase-specific CDK annotons of the referenced modules so that the umbrella page is self-contained for gene-review joins; the detailed modules are the authority on step structure. The umbrella does not use conforms_to because the conformance checker matches function-term tiers in order, which is not the relation between a summary node and a multi-part module. Deep research: no module deep-research report accompanies this file (no provider credentials were available in the authoring session; hand-writing one under a provider name is prohibited).

4Nodes
3Parts
0Variant Sets
0Variants
3Annotons
5Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:cell_cycle_progression deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Reaction chaining (advisory)

✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.

  • g1_s → g2_m [NOT_CHECKED]
    Temporal ordering of cell-cycle transitions; not a metabolic step.
  • g2_m → m_a_exit [NOT_CHECKED]
    Temporal ordering of cell-cycle transitions.
  • m_a_exit → g1_s [NOT_CHECKED]
    Cyclic re-entry edge.

Gene-review completeness (16/16 grounded genes reviewed)

16 complete review(s) · 13 with deep research · 0 missing review · 3 reviewed but lacking deep research

Gene Review Complete Deep research
ANAPC2 Q9UJX6 ✓ ✓ ✓
APC2 Q12440 ✓ ✓ ✓
apc2 Q874R3 ✓ ✓ ✓
CCNB1 P14635 ✓ ✓ ✓
CCNE1 P24864 ✓ ✓ ✓
cdc13 P10815 ✓ ✓ ✗
cdc2 P04551 ✓ ✓ ✗
CDC20 P26309 ✓ ✓ ✓
CDC20 Q12834 ✓ ✓ ✓
CDC28 P00546 ✓ ✓ ✓
CDK1 P06493 ✓ ✓ ✓
CDK2 P24941 ✓ ✓ ✓
cig2 P36630 ✓ ✓ ✓
CLB2 P24869 ✓ ✓ ✓
CLN3 P13365 ✓ ✓ ✓
slp1 P78972 ✓ ✓ ✗

Details

Context
EukaryotaNCBITaxon:2759
nucleusGO:0005634
Mitotic cell cycle progressionBiological Processcell_cycle_progression

Three cyclin-CDK-gated, proteolysis-locked transitions (G1/S, G2/M, M/A and exit) chained into a cycle.

mitotic cell cycle phase transitionGO:0044772 mitotic cell cycleGO:0000278
Context
EukaryotaNCBITaxon:2759
nucleusGO:0005634

Connections

g1_s -> g2_m Precedes
Commitment at Start precedes mitotic entry; S phase and G2 (DNA replication, growth, checkpoint surveillance) intervene and are outside this module.
g2_m -> m_a_exit Precedes
Active cyclin B-CDK1 phosphorylates and primes the APC/C, and mitotic events (spindle assembly, kinetochore attachment) intervene before anaphase onset.
g2_m -> m_a_exit Positively Regulates
CDK1 phosphorylation of APC/C subunits relieves autoinhibition and permits Cdc20 binding.
m_a_exit -> g1_s Precedes
Mitotic exit resets the low-CDK G1 state (Cdh1-APC/C active, CKI re-accumulated, corepressor dephosphorylated) from which the next Start is executed, closing the cycle.
m_a_exit -> g1_s Negatively Regulates
APC/C-Cdh1 activity and re-accumulated CKI keep S-phase cyclin-CDK off through G1 until the G1/S switch overrides them.
Part 1: G1/S transition (Start / restriction point)
G1/S transitionBiological Processg1_s

Growth-coupled G1 cyclin-CDK releases the G1/S transcription program; the resulting G1/S cyclin-CDK destroys the CDK inhibitor through SCF, committing the cell to S phase. Decomposed in MODULE:g1_s_transition.

G1/S transition of mitotic cell cycleGO:0000082

Annotons

G1/S cyclin-CDK holoenzyme
g1s_cyclin_cdk
Participant: Protein Complex: G1/S cyclin-CDK (cyclin D-CDK4/6 and cyclin E-CDK2; Cln-Cdc28; Cig2-Cdc2)
Protein Complex:
G1/S cyclin-CDK (cyclin D-CDK4/6 and cyclin E-CDK2; Cln-Cdc28; Cig2-Cdc2)GO:0000307
Active units:
CDK catalytic subunit
Participant: Family: G1/S cyclin-dependent kinase (CDK4/6, CDK2, Cdc28, Cdc2)
Family:
G1/S cyclin-dependent kinase (CDK4/6, CDK2, Cdc28, Cdc2)PANTHER:PTHR24056
Representative Members: CDK2UniProtKB:P24941 Cdc28UniProtKB:P00546 cdc2UniProtKB:P04551
Role: catalytic subunit
Function:
cyclin-dependent protein serine/threonine kinase activityGO:0004693
G1/S cyclin
Participant: Family: G1/S cyclin (cyclin D/E, Cln3 and Clb5, Cig2)
Family:
G1/S cyclin (cyclin D/E, Cln3 and Clb5, Cig2)PANTHER:PTHR10177
Representative Members: CCNE1UniProtKB:P24864 Cln3UniProtKB:P13365 cig2UniProtKB:P36630
Role: regulatory subunit
Function:
cyclin-dependent protein serine/threonine kinase regulator activityGO:0016538

Function

cyclin-dependent protein serine/threonine kinase activityGO:0004693
Targets: Rb/Whi5 corepressor; CDK inhibitor (p27, Sic1, Rum1)

Processes

G1/S transition of mitotic cell cycleGO:0000082

Locations

nucleusGO:0005634

The rising CDK activity that commits the cell at Start; its targets and the SCF switch are decomposed in MODULE:g1_s_transition.

file:modules/g1_s_transition.yaml
Detailed decomposition of the G1/S transition.
Part 2: G2/M transition (mitotic entry)
G2/M transitionBiological Processg2_m

Cyclin B-CDK1, held inactive by Wee1/Myt1 Tyr15 phosphorylation, is switched on by Cdc25 with Polo-kinase and Greatwall-endosulfine reinforcement. Decomposed in MODULE:g2_m_transition.

G2/M transition of mitotic cell cycleGO:0000086

Annotons

Cyclin B-CDK1 holoenzyme (M-phase promoting factor)
cyclin_b_cdk1
Participant: Protein Complex: Cyclin B-CDK1 (cyclin B1-CDK1; Clb2-Cdc28; Cdc13-Cdc2)
Protein Complex:
Cyclin B-CDK1 (cyclin B1-CDK1; Clb2-Cdc28; Cdc13-Cdc2)GO:0000307
Active units:
CDK1 catalytic subunit
Participant: Family: Mitotic CDK1 (CDK1, Cdc28, Cdc2)
Family:
Mitotic CDK1 (CDK1, Cdc28, Cdc2)PANTHER:PTHR24056
Representative Members: CDK1UniProtKB:P06493 Cdc28UniProtKB:P00546 cdc2UniProtKB:P04551
Role: catalytic subunit
Function:
cyclin-dependent protein serine/threonine kinase activityGO:0004693
Mitotic cyclin B
Participant: Family: Mitotic B-type cyclin (cyclin B1, Clb2, Cdc13)
Family:
Mitotic B-type cyclin (cyclin B1, Clb2, Cdc13)PANTHER:PTHR10177
Representative Members: CCNB1UniProtKB:P14635 Clb2UniProtKB:P24869 cdc13UniProtKB:P10815
Role: regulatory subunit
Function:
cyclin-dependent protein serine/threonine kinase activator activityGO:0061575

Function

cyclin-dependent protein serine/threonine kinase activityGO:0004693
Targets: mitotic substrates; Cdc25 and Wee1 (feedback); APC/C (priming)

Processes

G2/M transition of mitotic cell cycleGO:0000086

Locations

nucleusGO:0005634

The peak CDK activity of the cycle; its Wee1/Cdc25 switch is decomposed in MODULE:g2_m_transition.

file:modules/g2_m_transition.yaml
Detailed decomposition of the G2/M transition.
Part 3: metaphase/anaphase transition and mitotic exit
Metaphase/anaphase transition and mitotic exitBiological Processm_a_exit

SAC-gated APC/C-Cdc20 destroys securin and mitotic cyclins; separase cleaves cohesin; a CDK-counteracting phosphatase resets G1. Decomposed in MODULE:metaphase_anaphase_transition_and_mitotic_exit.

metaphase/anaphase transition of mitotic cell cycleGO:0007091 exit from mitosisGO:0010458

Annotons

APC/C ubiquitin ligase with Cdc20/Cdh1 coactivators
apc_c_switch
Participant: Protein Complex: Anaphase-promoting complex/cyclosome with Cdc20 or Cdh1
Protein Complex:
Anaphase-promoting complex/cyclosome with Cdc20 or Cdh1GO:0005680
Active units:
APC2 cullin-like scaffold
Participant: Family: APC2 (ANAPC2, Apc2, Apc2)
Family:
APC2 (ANAPC2, Apc2, Apc2)PANTHER:PTHR45957
Representative Members: ANAPC2UniProtKB:Q9UJX6 Apc2UniProtKB:Q12440 apc2UniProtKB:Q874R3
Role: catalytic-module scaffold
Cdc20/Cdh1 coactivator
Participant: Family: Cdc20/Cdh1 coactivators (CDC20, FZR1; Cdc20, Cdh1; Slp1, Ste9)
Family:
Cdc20/Cdh1 coactivators (CDC20, FZR1; Cdc20, Cdh1; Slp1, Ste9)PANTHER:PTHR19918
Representative Members: CDC20UniProtKB:Q12834 Cdc20UniProtKB:P26309 slp1UniProtKB:P78972
Role: substrate adaptor and activator
Function:
ubiquitin ligase activator activityGO:1990757

Function

ubiquitin protein ligase activityGO:0061630
Targets: securin; mitotic cyclins

Processes

anaphase-promoting complex-dependent catabolic processGO:0031145 metaphase/anaphase transition of mitotic cell cycleGO:0007091

Locations

nucleusGO:0005634

The proteolytic switch that collapses CDK activity and triggers anaphase; the SAC, securin-separase-cohesin and mitotic-exit phosphatase steps are decomposed in MODULE:metaphase_anaphase_transition_and_mitotic_exit.

file:modules/metaphase_anaphase_transition_and_mitotic_exit.yaml
Detailed decomposition of the metaphase/anaphase transition and mitotic exit.