Processes
Locations
MCIA assembly factor for the membrane-arm ND2-module intermediate.
Biogenesis of respiratory Complex I (NADH:ubiquinone oxidoreductase) is the most factor-dependent of all OXPHOS assembly pathways: its ~45 subunits (7 mtDNA-encoded membrane ND subunits and ~38 nuclear-encoded) are built as preassembled modules (N/Q/ND1/ND2/ND4/ND5) that are then joined, and this ordered process requires at least a dozen dedicated assembly factors that are not part of the mature holoenzyme. This module groups the human Complex I assembly factors by the step they serve. The membrane-arm (MCIA) machinery — NDUFAF1 (CIA30) together with ACAD9/ECSIT/ TMEM126B (reviewed with the core) and the multi-pass insertase-like scaffold TIMMDC1 — builds the ND2/membrane intermediates. The Q-module/mid-stage intermediate is chaperoned by the NDUFAF3– NDUFAF4 pair and by NDUFAF6. A set of factors covalently modify or metallate specific core subunits before they can be incorporated: NDUFAF5 hydroxylates a conserved arginine of NDUFS7, NDUFAF7 symmetrically dimethylates an arginine of NDUFS2, NUBPL (IND1) delivers the [4Fe-4S] clusters, and the FAD-dependent oxidoreductase-fold protein FOXRED1 is required for maturation of the late ~815 kDa intermediate (its substrate, if any, is unknown). Finally the late N-module is stabilised by NDUFAF2 (NDUFA12L) — a paralogue of the structural subunit NDUFA12 that binds transiently and is released from the mature enzyme — together with NDUFAF8, which is imported by the MIA40 disulfide relay and cooperates with NDUFAF5. Loss of any of these factors causes mitochondrial complex I deficiency, the commonest inborn OXPHOS defect — Leigh syndrome, leukoencephalopathy, fatal infantile lactic acidosis, hypertrophic cardiomyopathy and encephalopathy.
All recommended fields populated.
✗ none found
No MODULE:complex_i_assembly_factors deep-research report alongside the module YAML.
✓ every leaf node grounds to a representative protein.
✓ every declared conforms_to bundle matches its template motif.
4 gene-function check(s) reflected in core functions · 0 conflict(s) · 6 evidence or coverage gap(s) (10 comparison(s))
Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.
| Annoton | Participant | Function | Assessment |
|---|---|---|---|
| ndufaf5_activity | NDUFAF5 (human) UniProtKB:Q5TEU4 Family Representative |
oxidoreductase activity GO:0016491 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| ndufaf7_activity | NDUFAF7 (human) UniProtKB:Q7L592 Family Representative |
protein-arginine omega-N symmetric methyltransferase activity GO:0035243 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| nubpl_activity | NUBPL (human) UniProtKB:Q8TB37 Family Representative |
ATP-dependent FeS chaperone activity GO:0140663 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| foxred1_activity | FOXRED1 (human) UniProtKB:Q96CU9 Family Representative |
oxidoreductase activity GO:0016491 |
Function Unreviewed
No retained annotation or core molecular function supports this GO assertion. Missing or broader evidence is a coverage gap, not proof the activity is absent. |
| ndufaf2_activity | NDUFAF2 (human) UniProtKB:Q8N183 Family Representative |
protein-containing complex binding GO:0044877 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| ndufaf5_activity | NDUFAF5 / arginine-hydroxylase (SAM-fold) family PANTHER:PTHR13090 Family |
oxidoreductase activity GO:0016491 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR13090. |
| ndufaf7_activity | NDUFAF7 / MidA symmetric-arginine methyltransferase family PANTHER:PTHR12049 Family |
protein-arginine omega-N symmetric methyltransferase activity GO:0035243 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR12049. |
| nubpl_activity | NUBPL / Mrp-NBP35 (IND1) Fe-S NTPase family PANTHER:PTHR42961 Family |
ATP-dependent FeS chaperone activity GO:0140663 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR42961. |
| foxred1_activity | FOXRED1 / FAD-dependent oxidoreductase family PANTHER:PTHR13847 Family |
oxidoreductase activity GO:0016491 |
Family Function Unreviewed
The family review has no applicable adjudication supporting or excluding GO:0016491. |
| ndufaf2_activity | NDUFAF2 / NDUFA12L (B17.2L) family PANTHER:PTHR32470 Family |
protein-containing complex binding GO:0044877 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR32470. |
11 complete review(s) · 0 with deep research · 0 missing review · 11 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| FOXRED1 Q96CU9 | ✓ | ✓ | ✗ |
| NDUFAF1 Q9Y375 | ✓ | ✓ | ✗ |
| NDUFAF2 Q8N183 | ✓ | ✓ | ✗ |
| NDUFAF3 Q9BU61 | ✓ | ✓ | ✗ |
| NDUFAF4 Q9P032 | ✓ | ✓ | ✗ |
| NDUFAF5 Q5TEU4 | ✓ | ✓ | ✗ |
| NDUFAF6 Q330K2 | ✓ | ✓ | ✗ |
| NDUFAF7 Q7L592 | ✓ | ✓ | ✗ |
| NDUFAF8 A1L188 | ✓ | ✓ | ✗ |
| NUBPL Q8TB37 | ✓ | ✓ | ✗ |
| TIMMDC1 Q9NPL8 | ✓ | ✓ | ✗ |
Dedicated assembly factors of mitochondrial respiratory Complex I (NADH:ubiquinone oxidoreductase), grouped by assembly step and grounded to the completed human gene reviews: NDUFAF1 (Q9Y375, GO:0032981) and TIMMDC1 (Q9NPL8) build the membrane arm; NDUFAF3 (Q9BU61), NDUFAF4 (Q9P032) and NDUFAF6 (Q330K2) chaperone the Q-module intermediate; NDUFAF5 (Q5TEU4, GO:0016491 arginine hydroxylase of NDUFS7), NDUFAF7 (Q7L592, GO:0035243 symmetric-arginine methyltransferase of NDUFS2), NUBPL (Q8TB37, GO:0140663 + GO:0051539 [4Fe-4S] delivery) and FOXRED1 (Q96CU9, GO:0016491 + FAD) modify/metallate core subunits; NDUFAF2 (Q8N183, GO:0044877) and NDUFAF8 (A1L188) stabilise the late N-module. Only factors with genuine catalytic/binding activity carry a function (NDUFAF5/NDUFAF7 arginine-modifying enzymes; NUBPL Fe-S carrier; FOXRED1 FAD oxidoreductase; NDUFAF2 complex binding); the non-catalytic assembly factors (NDUFAF1, TIMMDC1, NDUFAF3, NDUFAF4, NDUFAF6, NDUFAF8) carry the assembly BP (GO:0032981) as a process rather than an invented MF. The related MCIA members ACAD9/ECSIT/ TMEM126B and the core catalytic subunits are curated separately (mitochondrial_complex_i_core). GO term ids and labels were verified against the local go.db; the Reactome "Complex I biogenesis" umbrella (R-HSA-6799198) was fetched and cached. Disorders: mitochondrial complex I deficiency (nuclear types), the commonest inborn OXPHOS defect — Leigh syndrome, leukoencephalopathy, fatal infantile lactic acidosis, cardiomyopathy and encephalopathy.
MCIA assembly factor for the membrane-arm ND2-module intermediate.
Insertase-like membrane scaffold for the ND membrane-arm subunits.
Q-module/membrane-arm intermediate chaperone (with NDUFAF4).
NDUFAF3-partner chaperone of the early Complex I intermediate.
Q-module/ND1 intermediate assembly factor.
Hydroxylates a conserved arginine of NDUFS7 during assembly.
Symmetrically dimethylates a conserved arginine of NDUFS2.
Binds and delivers [4Fe-4S] clusters to Complex I.
FAD-dependent oxidoreductase-fold assembly factor required at the mid-late (~815 kDa to holoenzyme) step.
Stabilises the late N-module assembly intermediate.
Twin-CX9C factor cooperating with NDUFAF5.