Conidiation (asexual sporulation) central regulatory cascade

A reusable module for the central genetic regulatory cascade that commits vegetative hyphae to asexual sporulation (conidiation) in filamentous ascomycetes. The shared logic - light/nutrient gating -> a master transcriptional activator -> stage-specific regulators -> structural output (hydrophobin rodlet layer and pigment) - is realized by two largely non-orthologous programs, captured as taxon variants: the Aspergillus nidulans FluG/Flb -> BrlA -> AbaA -> WetA/velvet pathway with G-protein/FlbA gating, and the Neurospora crassa fluffy (FL) program gated by the blue-light White Collar Complex and the circadian clock.

MODULE:conidiation_regulatory_cascadeDRAFTABSTRACTDevelopmental Processmodules/conidiation_regulatory_cascade.yaml
conidium formationGO:0048315
GO:0048315
conidium formation
Primary spore-cell axis concept for the module. Note GO:0061794 "conidium development" is being obsoleted as an unnecessary grouping term (geneontology/go-ontology#32315); GO:0048315 is the surviving specific term.
GO:0070787
conidiophore development
Second, structural axis concept. On the reproductive-structure-development branch and NOT a descendant of conidium formation; the cascade drives both axes (BrlA/AbaA build the conidiophore, WetA/velvet mature the spore).
file:projects/CONIDIATION.md
Conidiation regulatory cascade module design proposal
Module boundary, part decomposition, two-axis ontology analysis, and the annotation-inconsistency caveat (most conidiation annotation piles onto the broad asexual sporulation grouping term rather than the specific conidium/conidiophore terms) are recorded in the project design page.
UniProtKB:O13360
Conidial development protein fluffy (Neurospora crassa)
FL (fluffy), a Gal4-type Zn(II)2Cys6 transcription factor, grounds the master-activation role of the Neurospora macroconidiation variant.
NCBITaxon:367110
Neurospora crassa OR74A
Taxon of the second variant; Neurospora forms macroconidia by budding of aerial hyphae rather than on a dedicated conidiophore.
PMID:15126394
The fluffy gene of Neurospora crassa is necessary and sufficient to induce conidiophore development
Establishes the Neurospora staged cascade acon-2 -> FL -> acon-3 (fl acts downstream of acon-2 and upstream of acon-3). Note this source does NOT extend the chain to the con genes - it reports that fl-driven morphogenesis correlated with increased expression of eas but not con-6 or con-10, so the acon-3 -> con-gene step is not carried by this reference.

Reusable ABSTRACT module with two taxon variants (EXACTLY_ONE): the Aspergillus nidulans BrlA central-regulatory-pathway paradigm and the Neurospora crassa fluffy/WCC-clock macroconidiation program. All 30 grounded genes have validated gene reviews (genes/EMENI/ and genes/NEUCR/). Conserved-role annotons are grounded as FAMILY selectors with a PANTHER PTHR family term, a verified UniProtKB representative member, and PAINT ancestral_nodes (PANTHER:PTN...) taken from the GOA WITH/FROM evidence on each gene's IBA annotations (GO_REF:0000033); PTN ids were never guessed. Nodes propagating terms flagged in the gene reviews were deliberately excluded (e.g. the flbD cell-cycle node PTN000067791 and the wA oxidoreductase node PTN002453893). Species-specific members without an IBD node (fluG, flbE, sfgA, rodA, dewA, wA, FL, FRQ, EAS, CON-10) remain GENE_PRODUCT selectors grounded by verified UniProtKB accessions. Molecular-function terms are on the leaf annotons.

13Nodes
10Parts
1Variant Sets
2Variants
30Annotons
11Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✓ present

  • conidiation_regulatory_cascade-deep-research-manual.md (manual)

Leaf nodes lacking representative members

✓ representative grounding skipped for abstract module.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Gene-review completeness (30/30 grounded genes reviewed)

29 complete review(s) · 0 with deep research · 0 missing review · 30 reviewed but lacking deep research

Gene Review Complete Deep research
abaA P20945 ✓ ✓ ✗
acon-2 U9W570 ✓ ✓ ✗
acon-3 Q7SB37 ✓ ✓ ✗
brlA P10069 ✓ ✓ ✗
con-10 P10713 ✓ 0/0 ✗
con-6 P34762 ✓ ✓ ✗
dewA P52750 ✓ ✓ ✗
eas Q04571 ✓ ✓ ✗
fadA Q00743 ✓ ✓ ✗
fl O13360 ✓ ✓ ✗
flbA P38093 ✓ ✓ ✗
flbB C8VBM8 ✓ ✓ ✗
flbC G5EAS8 ✓ ✓ ✗
flbD G5EAY5 ✓ ✓ ✗
flbE Q5BFF9 ✓ ✓ ✗
fluG P38094 ✓ ✓ ✗
frq P19970 ✓ ✓ ✗
gpgA Q5B9N8 ✓ ✓ ✗
laeA C8VQG9 ✓ ✓ ✗
rodA P28346 ✓ ✓ ✗
sfaD Q5BH99 ✓ ✓ ✗
sfgA Q3I5F3 ✓ ✓ ✗
veA C8VTV4 ✓ ✓ ✗
velB C8VTS4 ✓ ✓ ✗
vosA Q5BBX1 ✓ ✓ ✗
wA Q03149 ✓ ✓ ✗
wc-1 Q01371 ✓ ✓ ✗
wc-2 P78714 ✓ ✓ ✗
wetA P22022 ✓ ✓ ✗
yA P17489 ✓ ✓ ✗

Details

Context
PezizomycotinaNCBITaxon:147538
Asexual sporulation (conidiation) central regulatory cascadeDevelopmental Processconidiation_regulatory_cascade
conidium formationGO:0048315
Context
PezizomycotinaNCBITaxon:147538
Variant set: Taxon-specific realizations of the conidiation regulatory cascade by fungal lineage / taxon (Exactly One)

The two programs are analogous (same developmental logic: gate -> master activator -> stage regulation -> structural output) but largely non-orthologous: Aspergillus BrlA/AbaA/WetA have no one-to-one Neurospora counterparts, and Neurospora forms macroconidia by budding rather than on a dedicated conidiophore. Additional Aspergilli (A. fumigatus, A. flavus) follow the Aspergillus paradigm.

Aspergillus paradigm (BrlA central regulatory pathway)Developmental Processaspergillus_paradigm

The Aspergillus nidulans realization of the conidiation cascade: FluG/Flb upstream activators induce the C2H2 master regulator BrlA, which activates AbaA and then WetA plus the velvet complex (VosA/VelB/VeA/LaeA), building a multicellular conidiophore and maturing the conidia. G-protein (FadA) proliferation signaling, attenuated by the RGS protein FlbA, gates entry.

conidiophore developmentGO:0070787
Context
Aspergillus nidulansNCBITaxon:162425

Connections

upstream_activation -> brla_induction Positively Regulates
FluG/Flb developmental competence induces the master regulator brlA.
BrlA activates abaA during mid-development.
AbaA activates wetA and the maturation program.
weta_maturation -> structural_output Positively Regulates
WetA/velvet late regulation switches on spore-wall and pigment structural genes.
repressive_gating -> upstream_activation Negatively Regulates
Active FadA/G-protein proliferation signaling represses entry into the conidiation program.
flbA -> fadA Negatively Regulates
FlbA (RGS) attenuates FadA GTPase signaling, relieving repression of conidiation.
fluG -> sfgA Negatively Regulates
FluG-dependent signaling relieves SfgA-mediated repression of the Flb activators.
Part 1: developmental competence / upstream activation
Developmental competence and upstream activationRegulatory Stepupstream_activation

FluG generates a low-molecular-weight extracellular signal that relieves repression by SfgA; the fluffy (Flb) transcription factors FlbB, FlbC and FlbD (with FlbE) then converge to induce the master regulator brlA.

Annotons

FluG developmental signal factor
fluG
Participant: Gene Product: FluG
Gene Product:

Synthesizes the diffusible extracellular factor required to trigger conidiation; loss gives a fluffy aconidial colony.

FlbB bZIP factor
flbB
Participant: Family: bZIP YAP Transcription Factors (representative: FlbB)
Family:
bZIP YAP Transcription Factors (representative: FlbB)PANTHER:PTHR40621
Representative Members: FlbBUniProtKB:C8VBM8

Function

DNA-binding transcription factor activityGO:0003700

bZIP transcription factor acting upstream of brlA.

FlbC C2H2 factor
flbC
Participant: Family: Sal C2H2-type zinc-finger (representative: FlbC)
Family:
Sal C2H2-type zinc-finger (representative: FlbC)PANTHER:PTHR23233
Representative Members: FlbCUniProtKB:G5EAS8

Function

DNA-binding transcription factor activityGO:0003700

C2H2 zinc-finger transcription factor contributing to brlA induction.

FlbD Myb factor
flbD
Participant: Family: MYB Transcription Factors (representative: FlbD)
Family:
MYB Transcription Factors (representative: FlbD)PANTHER:PTHR45614
Representative Members: FlbDUniProtKB:G5EAY5

Function

DNA-binding transcription factor activityGO:0003700

cMyb-family transcription factor acting with FlbB to activate brlA.

FlbE accessory factor
flbE
Participant: Gene Product: FlbE
Gene Product:

Accessory factor that interacts with FlbB and is required for its activity.

Part 2: master-switch induction
BrlA master-switch inductionRegulatory Stepbrla_induction

BrlA, a C2H2 zinc-finger transcription factor, is the master regulator whose activation switches hyphal growth to conidiophore development.

Annotons

BrlA master regulator
brlA
Participant: Family: Zinc finger (representative: BrlA)
Family:
Zinc finger (representative: BrlA)PANTHER:PTHR16515
Representative Members: BrlAUniProtKB:P10069

Function

DNA-binding transcription factor activityGO:0003700

Processes

conidiophore developmentGO:0070787

Master switch; required for conidiophore vesicle and sterigmata formation. brlA mutants form bristle-like stalks without conidia.

Part 3: phialide differentiation (mid-development)
AbaA phialide differentiationRegulatory Stepabaa_differentiation

AbaA, a TEA/ATTS-domain transcription factor activated by BrlA during mid-development, drives differentiation of the spore-producing phialides.

Annotons

AbaA middle regulator
abaA
Participant: Family: TEC1/TEAD Transcription Factor (representative: AbaA)
Family:
TEC1/TEAD Transcription Factor (representative: AbaA)PANTHER:PTHR11834
Representative Members: AbaAUniProtKB:P20945

Function

DNA-binding transcription factor activityGO:0003700

Processes

conidiophore developmentGO:0070787

TEA/ATTS transcription factor for phialide differentiation; abaA mutants form beaded (abacus) chains instead of conidia.

Part 4: spore maturation and dormancy (WetA + velvet)
WetA and velvet-complex spore maturationRegulatory Stepweta_maturation

AbaA activates wetA, which together with the velvet-complex regulators VosA and VelB (with VeA and the methyltransferase LaeA) drives spore-specific gene expression, conidial wall maturation, trehalose biosynthesis, dormancy and stress resistance.

Annotons

WetA late regulator
wetA
Participant: Family: Protein ESC1/WETA-related (representative: WetA)
Family:
Protein ESC1/WETA-related (representative: WetA)PANTHER:PTHR22934
Representative Members: WetAUniProtKB:P22022

Processes

conidium formationGO:0048315 asexual spore wall assemblyGO:0042243

Late regulator of conidium-specific gene expression and wall maturation; wetA mutants make conidia that autolyse (wet-white). Acts as a developmental regulator of gene expression; a specific sequence-specific DNA-binding activity is not firmly established, so no molecular function term is asserted (see gene review).

VosA velvet regulator
vosA
Participant: Family: Spore development regulator VosA family (representative: VosA)
Family:
Spore development regulator VosA family (representative: VosA)PANTHER:PTHR33572
Representative Members: VosAUniProtKB:Q5BBX1

Function

DNA-binding transcription factor activityGO:0003700

Processes

conidium formationGO:0048315

Velvet-family regulator of spore maturation, trehalose biosynthesis and dormancy; represses premature germination.

VelB velvet subunit
velB
Participant: Family: Spore development regulator VosA family (representative: VelB)
Family:
Spore development regulator VosA family (representative: VelB)PANTHER:PTHR33572
Representative Members: VelBUniProtKB:C8VTS4

Function

DNA-binding transcription factor activityGO:0003700

Velvet-complex subunit partnering VosA in spore maturation.

VeA velvet subunit (light regulator)
veA
Participant: Family: Spore development regulator VosA family (representative: VeA)
Family:
Spore development regulator VosA family (representative: VeA)PANTHER:PTHR33572
Representative Members: VeAUniProtKB:C8VTV4

Light-responsive bridging subunit of the velvet complex coordinating the asexual/sexual developmental balance; nuclear import is favored in the dark.

LaeA velvet methyltransferase
laeA
Participant: Family: UbiE/COQ5 methyltransferase (representative: LaeA)
Family:
UbiE/COQ5 methyltransferase (representative: LaeA)PANTHER:PTHR43591
Representative Members: LaeAUniProtKB:C8VQG9

Function

methyltransferase activityGO:0008168

Velvet-complex methyltransferase linking development to secondary metabolism.

Part 5: structural output (spore wall and pigment)
Conidial wall and pigment structural outputBiological Processstructural_output

Late-activated structural genes build the mature conidial surface: class I hydrophobins RodA and DewA form the hydrophobic rodlet layer, and the WA polyketide synthase with the YA laccase produce the conidial green (DHN-derived) pigment.

Annotons

RodA rodlet hydrophobin
rodA
Participant: Gene Product: RodA
Gene Product:

Function

structural constituent of cell wallGO:0005199

Principal rodlet-layer hydrophobin conferring conidial surface hydrophobicity.

DewA spore-wall hydrophobin
dewA
Participant: Gene Product: DewA
Gene Product:

Function

structural constituent of cell wallGO:0005199

Second conidial hydrophobin contributing to spore-wall surface properties.

WA conidial pigment polyketide synthase
wA
Participant: Gene Product: WA
Gene Product:

Function

polyketide synthase activityGO:0016218

Polyketide synthase producing the naphthopyrone precursor of the conidial pigment; wA mutants have white conidia.

YA conidial laccase
yA
Participant: Family: Multi-copper oxidase (representative: YA)
Family:
Multi-copper oxidase (representative: YA)PANTHER:PTHR11709
Representative Members: YAUniProtKB:P17489

Function

hydroquinone:oxygen oxidoreductase activityGO:0052716

Conidial laccase (p-diphenol oxidase) converting the WA-derived pigment intermediate to the mature green pigment; yA mutants have yellow conidia.

Part 6: repressive gating (proliferation signaling and its attenuation)
G-protein proliferation signaling and FlbA attenuationRegulatory Steprepressive_gating

The heterotrimeric G protein (FadA-alpha, SfaD-beta, GpgA-gamma) promotes vegetative proliferation and represses conidiation; the RGS protein FlbA attenuates FadA signaling to license development. SfgA is a negative regulator downstream of FluG.

Annotons

FadA G-protein alpha subunit
fadA
Participant: Family: GTP-binding protein alpha subunit (representative: FadA)
Family:
GTP-binding protein alpha subunit (representative: FadA)PANTHER:PTHR10218
Representative Members: FadAUniProtKB:Q00743

Function

G protein activityGO:0003925

Galpha subunit; active GTP-bound FadA drives proliferation and blocks conidiation.

SfaD G-protein beta subunit
sfaD
Participant: Family: Guanine nucleotide-binding protein beta subunit (representative: SfaD)
Family:
Guanine nucleotide-binding protein beta subunit (representative: SfaD)PANTHER:PTHR19850
Representative Members: SfaDUniProtKB:Q5BH99

Gbeta subunit of the proliferation-promoting heterotrimeric G protein.

GpgA G-protein gamma subunit
gpgA
Participant: Family: Guanine nucleotide-binding protein gamma subunit (representative: GpgA)
Family:
Guanine nucleotide-binding protein gamma subunit (representative: GpgA)PANTHER:PTHR28189
Representative Members: GpgAUniProtKB:Q5B9N8

Ggamma subunit of the proliferation-promoting heterotrimeric G protein.

FlbA regulator of G-protein signaling
flbA
Participant: Family: Regulator of G-protein Signaling (representative: FlbA)
Family:
Regulator of G-protein Signaling (representative: FlbA)PANTHER:PTHR10845
Representative Members: FlbAUniProtKB:P38093

Function

GTPase activator activityGO:0005096

RGS protein that stimulates FadA GTP hydrolysis, dampening proliferation signaling so conidiation can proceed; flbA mutants are fluffy and aconidial.

SfgA negative regulator
sfgA
Participant: Gene Product: SfgA
Gene Product:

Function

DNA-binding transcription factor activityGO:0003700

Zn(II)2Cys6 negative regulator acting downstream of FluG and upstream of the Flb factors; FluG signaling relieves SfgA repression.

Neurospora crassa macroconidiation (fluffy / WCC-clock program)Developmental Processneurospora_macroconidiation

The Neurospora crassa realization: an analogous but non-orthologous program. Neurospora forms macroconidia by budding/fission of aerial hyphae rather than a brlA-type conidiophore. The blue-light White Collar Complex (WC-1/WC-2) and the circadian clock (FRQ) gate the timing of conidiation (the classic banding rhythm); the Gal4-type Zn(II)2Cys6 transcription factor FL (fluffy) is the central activator; conidiation-specific and rodlet (hydrophobin) genes provide structural output. Stage genes acon-2 and acon-3 control successive morphological steps. The staged cascade is acon-2 -> FL -> acon-3, conceptually parallel to Aspergillus BrlA -> AbaA -> WetA but built from non-orthologous families; whether acon-3 acts upstream of the conidiation-specific con genes is not established (see the acon-3 -> structural-output connection below).

conidium formationGO:0048315
Context
Neurospora crassaNCBITaxon:367110

Connections

neu_wcc_clock_gating -> neu_fl_activation Positively Regulates
Light (WCC) and the circadian clock gate induction of the FL-driven conidiation program.
neu_fl_activation -> neu_acon3_stage Positively Regulates
FL activation induces the ACON-3-dependent later-stage program.
neu_acon3_stage -> neu_structural_output Positively Regulates
ACON-3 acts at the later stage of the program, upstream of conidiation-specific / structural output (rodlet hydrophobin, con genes). Uncited - PMID:15126394 places acon-3 downstream of fl but does not establish an acon-3 -> con-gene link, and reports con-6/con-10 are NOT induced by fl-driven morphogenesis. This edge needs a primary acon-3 epistasis source.
neu_acon2 -> neu_fl Positively Regulates
ACON-2 (cAMP phosphodiesterase) acts upstream of FL to permit conidiation.
Part 1: light and circadian gating
Upstream signaling and gating (light/circadian and cAMP)Regulatory Stepneu_wcc_clock_gating

The blue-light photoreceptor White Collar Complex (WC-1/WC-2) and the circadian oscillator FRQ gate the timing/rhythm of conidiation; in parallel the cAMP phosphodiesterase ACON-2 dampens cAMP/PKA signaling, acting upstream of FL to permit conidiation.

Annotons

WC-1 blue-light photoreceptor / TF
neu_wc1
Participant: Family: Blue-light signal transduction (representative: WC-1)
Family:
Blue-light signal transduction (representative: WC-1)PANTHER:PTHR47429
Representative Members: WC-1UniProtKB:Q01371

Function

DNA-binding transcription factor activityGO:0003700

GATA-type, LOV-domain blue-light photoreceptor; with WC-2 forms the White Collar Complex that activates light-induced genes including conidiation and frq.

WC-2 White Collar Complex partner
neu_wc2
Participant: Family: GATA zinc finger domain-containing protein (representative: WC-2)
Family:
GATA zinc finger domain-containing protein (representative: WC-2)PANTHER:PTHR47172
Representative Members: WC-2UniProtKB:P78714

Function

DNA-binding transcription factor activityGO:0003700

GATA-type transcription factor partnering WC-1 in the White Collar Complex.

FRQ circadian clock protein
neu_frq
Participant: Gene Product: FRQ
Gene Product:

Core negative-feedback oscillator that, with the WCC, imposes circadian control on conidiation (banding rhythm).

ACON-2 cAMP phosphodiesterase gate
neu_acon2
Participant: Family: Cyclic nucleotide phosphodiesterase (representative: ACON-2)
Family:
Cyclic nucleotide phosphodiesterase (representative: ACON-2)PANTHER:PTHR11347
Representative Members: ACON-2UniProtKB:U9W570

Function

3',5'-cyclic-AMP phosphodiesterase activityGO:0004115

cAMP phosphodiesterase that dampens cAMP/PKA signaling and acts upstream of FL to permit conidiation.

Part 2: master activation
FL (fluffy) master activationRegulatory Stepneu_fl_activation

FL (fluffy), a Gal4-type Zn(II)2Cys6 transcription factor, is the central activator of the macroconidiation program; fl mutants grow as undifferentiated fluffy aerial hyphae.

Annotons

FL fluffy master regulator
neu_fl
Participant: Gene Product: FL (fluffy)
Gene Product:
FL (fluffy)UniProtKB:O13360

Function

DNA-binding transcription factor activityGO:0003700

Processes

conidium formationGO:0048315

Zn(II)2Cys6 transcription factor; the central positive regulator of macroconidiation (functional analog of the Aspergillus BrlA role, but non-orthologous). Acts with the stage regulators acon-2 and acon-3.

Part 3: stage regulation (downstream of FL)
ACON-3 stage regulationRegulatory Stepneu_acon3_stage

ACON-3 (MEDUSA/MedA family, DUF7082) acts downstream of FL and is required for later stages of macroconidiation; its position relative to the conidiation-specific con genes is not established.

Annotons

ACON-3 stage regulator
neu_acon3
Participant: Gene Product: ACON-3 (Acr1)
Gene Product:
ACON-3 (Acr1)UniProtKB:Q7SB37

Processes

conidium formationGO:0048315

Nuclear MEDUSA/MedA-family (DUF7082) regulator downstream of FL; required for later conidiation stages. Position relative to the con genes is unestablished. Molecular function uncharacterized.

Part 4: structural / conidiation-specific output
Conidiation-specific and rodlet structural outputBiological Processneu_structural_output

Conidiation-specific (con) genes and the EAS/CCG-2 class I hydrophobin build the mature macroconidium surface, including the rodlet layer.

Annotons

EAS/CCG-2 rodlet hydrophobin
neu_eas
Participant: Gene Product: EAS (CCG-2)
Gene Product:
EAS (CCG-2)UniProtKB:Q04571

Function

structural constituent of cell wallGO:0005199

Processes

asexual spore wall assemblyGO:0042243

Class I hydrophobin forming the conidial rodlet layer; clock-controlled (ccg-2).

CON-6 conidiation-specific protein
neu_con6
Participant: Family: UPF0654 domain-containing protein (representative: CON-6)
Family:
UPF0654 domain-containing protein (representative: CON-6)PANTHER:PTHR36576
Representative Members: CON-6UniProtKB:P34762

Conidiation-specific gene product accumulating during macroconidiation.

CON-10 conidiation-specific protein
neu_con10
Participant: Gene Product: CON-10
Gene Product:

Light- and development-regulated conidiation-specific gene product.