Conidiation (asexual sporulation) central regulatory cascade

A reusable module for the central genetic regulatory cascade that commits vegetative hyphae to asexual sporulation (conidiation) in filamentous ascomycetes. The shared logic - light/nutrient gating -> a master transcriptional activator -> stage-specific regulators -> structural output (hydrophobin rodlet layer and pigment) - is realized by two largely non-orthologous programs, captured as taxon variants: the Aspergillus nidulans FluG/Flb -> BrlA -> AbaA -> WetA/velvet pathway with G-protein/FlbA gating, and the Neurospora crassa fluffy (FL) program gated by the blue-light White Collar Complex and the circadian clock.

MODULE:conidiation_regulatory_cascadeDRAFTABSTRACTDevelopmental Processmodules/conidiation_regulatory_cascade.yaml
conidium formationGO:0048315
GO:0048315
conidium formation
Primary spore-cell axis concept for the module. Note GO:0061794 "conidium development" is being obsoleted as an unnecessary grouping term (geneontology/go-ontology#32315); GO:0048315 is the surviving specific term.
GO:0070787
conidiophore development
Second, structural axis concept. On the reproductive-structure-development branch and NOT a descendant of conidium formation; the cascade drives both axes (BrlA/AbaA build the conidiophore, WetA/velvet mature the spore).
file:projects/CONIDIATION.md
Conidiation regulatory cascade module design proposal
Module boundary, part decomposition, two-axis ontology analysis, and the annotation-inconsistency caveat (most conidiation annotation piles onto the broad asexual sporulation grouping term rather than the specific conidium/conidiophore terms) are recorded in the project design page.
UniProtKB:O13360
Conidial development protein fluffy (Neurospora crassa)
FL (fluffy), a Gal4-type Zn(II)2Cys6 transcription factor, grounds the master-activation role of the Neurospora macroconidiation variant.
NCBITaxon:367110
Neurospora crassa OR74A
Taxon of the second variant; Neurospora forms macroconidia by budding of aerial hyphae rather than on a dedicated conidiophore.
PMID:15126394
The fluffy gene of Neurospora crassa is necessary and sufficient to induce conidiophore development
Establishes the Neurospora staged cascade acon-2 -> FL -> acon-3 (fl acts downstream of acon-2 and upstream of acon-3). Note this source does NOT extend the chain to the con genes - it reports that fl-driven morphogenesis correlated with increased expression of eas but not con-6 or con-10, so the acon-3 -> con-gene step is not carried by this reference.

Reusable ABSTRACT module with two taxon variants (EXACTLY_ONE): the Aspergillus nidulans BrlA central-regulatory-pathway paradigm and the Neurospora crassa fluffy/WCC-clock macroconidiation program. All 30 grounded genes have validated gene reviews (genes/EMENI/ and genes/NEUCR/). Conserved-role annotons are grounded as FAMILY selectors with a PANTHER PTHR family term, a verified UniProtKB representative member, and PAINT ancestral_nodes (PANTHER:PTN...) taken from the GOA WITH/FROM evidence on each gene's IBA annotations (GO_REF:0000033); PTN ids were never guessed. Nodes propagating terms flagged in the gene reviews were deliberately excluded (e.g. the flbD cell-cycle node PTN000067791 and the wA oxidoreductase node PTN002453893). Species-specific members without an IBD node (fluG, flbE, sfgA, rodA, dewA, wA, FL, FRQ, EAS, CON-10) remain GENE_PRODUCT selectors grounded by verified UniProtKB accessions. Molecular-function terms are on the leaf annotons.

13Nodes
10Parts
1Variant Sets
2Variants
30Annotons
11Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✓ present

  • conidiation_regulatory_cascade-deep-research-manual.md (manual)

Leaf nodes lacking representative members

representative grounding skipped for abstract module.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (30/30 grounded genes reviewed)

29 complete review(s) · 0 with deep research · 0 missing review · 30 reviewed but lacking deep research

Gene Review Complete Deep research
abaA P20945
acon-2 U9W570
acon-3 Q7SB37
brlA P10069
con-10 P10713 0/0
con-6 P34762
dewA P52750
eas Q04571
fadA Q00743
fl O13360
flbA P38093
flbB C8VBM8
flbC G5EAS8
flbD G5EAY5
flbE Q5BFF9
fluG P38094
frq P19970
gpgA Q5B9N8
laeA C8VQG9
rodA P28346
sfaD Q5BH99
sfgA Q3I5F3
veA C8VTV4
velB C8VTS4
vosA Q5BBX1
wA Q03149
wc-1 Q01371
wc-2 P78714
wetA P22022
yA P17489

Details

Context
PezizomycotinaNCBITaxon:147538
Asexual sporulation (conidiation) central regulatory cascadeDevelopmental Processconidiation_regulatory_cascade
conidium formationGO:0048315
Context
PezizomycotinaNCBITaxon:147538
Variant set: Taxon-specific realizations of the conidiation regulatory cascade by fungal lineage / taxon (Exactly One)

The two programs are analogous (same developmental logic: gate -> master activator -> stage regulation -> structural output) but largely non-orthologous: Aspergillus BrlA/AbaA/WetA have no one-to-one Neurospora counterparts, and Neurospora forms macroconidia by budding rather than on a dedicated conidiophore. Additional Aspergilli (A. fumigatus, A. flavus) follow the Aspergillus paradigm.

Aspergillus paradigm (BrlA central regulatory pathway)Developmental Processaspergillus_paradigm

The Aspergillus nidulans realization of the conidiation cascade: FluG/Flb upstream activators induce the C2H2 master regulator BrlA, which activates AbaA and then WetA plus the velvet complex (VosA/VelB/VeA/LaeA), building a multicellular conidiophore and maturing the conidia. G-protein (FadA) proliferation signaling, attenuated by the RGS protein FlbA, gates entry.

conidiophore developmentGO:0070787
Context
Aspergillus nidulansNCBITaxon:162425

Connections

upstream_activation -> brla_induction Positively Regulates
FluG/Flb developmental competence induces the master regulator brlA.
BrlA activates abaA during mid-development.
AbaA activates wetA and the maturation program.
weta_maturation -> structural_output Positively Regulates
WetA/velvet late regulation switches on spore-wall and pigment structural genes.
repressive_gating -> upstream_activation Negatively Regulates
Active FadA/G-protein proliferation signaling represses entry into the conidiation program.
flbA -> fadA Negatively Regulates
FlbA (RGS) attenuates FadA GTPase signaling, relieving repression of conidiation.
fluG -> sfgA Negatively Regulates
FluG-dependent signaling relieves SfgA-mediated repression of the Flb activators.
Part 1: developmental competence / upstream activation
Developmental competence and upstream activationRegulatory Stepupstream_activation

FluG generates a low-molecular-weight extracellular signal that relieves repression by SfgA; the fluffy (Flb) transcription factors FlbB, FlbC and FlbD (with FlbE) then converge to induce the master regulator brlA.

Annotons

FluG developmental signal factor
fluG
Participant: Gene Product: FluG
Gene Product:

Synthesizes the diffusible extracellular factor required to trigger conidiation; loss gives a fluffy aconidial colony.

FlbB bZIP factor
flbB
Participant: Family: bZIP YAP Transcription Factors (representative: FlbB)
Family:
bZIP YAP Transcription Factors (representative: FlbB)PANTHER:PTHR40621
Representative Members: FlbBUniProtKB:C8VBM8

Function

DNA-binding transcription factor activityGO:0003700

bZIP transcription factor acting upstream of brlA.

FlbC C2H2 factor
flbC
Participant: Family: Sal C2H2-type zinc-finger (representative: FlbC)
Family:
Sal C2H2-type zinc-finger (representative: FlbC)PANTHER:PTHR23233
Representative Members: FlbCUniProtKB:G5EAS8

Function

DNA-binding transcription factor activityGO:0003700

C2H2 zinc-finger transcription factor contributing to brlA induction.

FlbD Myb factor
flbD
Participant: Family: MYB Transcription Factors (representative: FlbD)
Family:
MYB Transcription Factors (representative: FlbD)PANTHER:PTHR45614
Representative Members: FlbDUniProtKB:G5EAY5

Function

DNA-binding transcription factor activityGO:0003700

cMyb-family transcription factor acting with FlbB to activate brlA.

FlbE accessory factor
flbE
Participant: Gene Product: FlbE
Gene Product:

Accessory factor that interacts with FlbB and is required for its activity.

Part 2: master-switch induction
BrlA master-switch inductionRegulatory Stepbrla_induction

BrlA, a C2H2 zinc-finger transcription factor, is the master regulator whose activation switches hyphal growth to conidiophore development.

Annotons

BrlA master regulator
brlA
Participant: Family: Zinc finger (representative: BrlA)
Family:
Zinc finger (representative: BrlA)PANTHER:PTHR16515
Representative Members: BrlAUniProtKB:P10069

Function

DNA-binding transcription factor activityGO:0003700

Processes

conidiophore developmentGO:0070787

Master switch; required for conidiophore vesicle and sterigmata formation. brlA mutants form bristle-like stalks without conidia.

Part 3: phialide differentiation (mid-development)
AbaA phialide differentiationRegulatory Stepabaa_differentiation

AbaA, a TEA/ATTS-domain transcription factor activated by BrlA during mid-development, drives differentiation of the spore-producing phialides.

Annotons

AbaA middle regulator
abaA
Participant: Family: TEC1/TEAD Transcription Factor (representative: AbaA)
Family:
TEC1/TEAD Transcription Factor (representative: AbaA)PANTHER:PTHR11834
Representative Members: AbaAUniProtKB:P20945

Function

DNA-binding transcription factor activityGO:0003700

Processes

conidiophore developmentGO:0070787

TEA/ATTS transcription factor for phialide differentiation; abaA mutants form beaded (abacus) chains instead of conidia.

Part 4: spore maturation and dormancy (WetA + velvet)
WetA and velvet-complex spore maturationRegulatory Stepweta_maturation

AbaA activates wetA, which together with the velvet-complex regulators VosA and VelB (with VeA and the methyltransferase LaeA) drives spore-specific gene expression, conidial wall maturation, trehalose biosynthesis, dormancy and stress resistance.

Annotons

WetA late regulator
wetA
Participant: Family: Protein ESC1/WETA-related (representative: WetA)
Family:
Protein ESC1/WETA-related (representative: WetA)PANTHER:PTHR22934
Representative Members: WetAUniProtKB:P22022

Processes

conidium formationGO:0048315 asexual spore wall assemblyGO:0042243

Late regulator of conidium-specific gene expression and wall maturation; wetA mutants make conidia that autolyse (wet-white). Acts as a developmental regulator of gene expression; a specific sequence-specific DNA-binding activity is not firmly established, so no molecular function term is asserted (see gene review).

VosA velvet regulator
vosA
Participant: Family: Spore development regulator VosA family (representative: VosA)
Family:
Spore development regulator VosA family (representative: VosA)PANTHER:PTHR33572
Representative Members: VosAUniProtKB:Q5BBX1

Function

DNA-binding transcription factor activityGO:0003700

Processes

conidium formationGO:0048315

Velvet-family regulator of spore maturation, trehalose biosynthesis and dormancy; represses premature germination.

VelB velvet subunit
velB
Participant: Family: Spore development regulator VosA family (representative: VelB)
Family:
Spore development regulator VosA family (representative: VelB)PANTHER:PTHR33572
Representative Members: VelBUniProtKB:C8VTS4

Function

DNA-binding transcription factor activityGO:0003700

Velvet-complex subunit partnering VosA in spore maturation.

VeA velvet subunit (light regulator)
veA
Participant: Family: Spore development regulator VosA family (representative: VeA)
Family:
Spore development regulator VosA family (representative: VeA)PANTHER:PTHR33572
Representative Members: VeAUniProtKB:C8VTV4

Light-responsive bridging subunit of the velvet complex coordinating the asexual/sexual developmental balance; nuclear import is favored in the dark.

LaeA velvet methyltransferase
laeA
Participant: Family: UbiE/COQ5 methyltransferase (representative: LaeA)
Family:
UbiE/COQ5 methyltransferase (representative: LaeA)PANTHER:PTHR43591
Representative Members: LaeAUniProtKB:C8VQG9

Function

methyltransferase activityGO:0008168

Velvet-complex methyltransferase linking development to secondary metabolism.

Part 5: structural output (spore wall and pigment)
Conidial wall and pigment structural outputBiological Processstructural_output

Late-activated structural genes build the mature conidial surface: class I hydrophobins RodA and DewA form the hydrophobic rodlet layer, and the WA polyketide synthase with the YA laccase produce the conidial green (DHN-derived) pigment.

Annotons

RodA rodlet hydrophobin
rodA
Participant: Gene Product: RodA
Gene Product:

Function

structural constituent of cell wallGO:0005199

Principal rodlet-layer hydrophobin conferring conidial surface hydrophobicity.

DewA spore-wall hydrophobin
dewA
Participant: Gene Product: DewA
Gene Product:

Function

structural constituent of cell wallGO:0005199

Second conidial hydrophobin contributing to spore-wall surface properties.

WA conidial pigment polyketide synthase
wA
Participant: Gene Product: WA
Gene Product:

Function

polyketide synthase activityGO:0016218

Polyketide synthase producing the naphthopyrone precursor of the conidial pigment; wA mutants have white conidia.

YA conidial laccase
yA
Participant: Family: Multi-copper oxidase (representative: YA)
Family:
Multi-copper oxidase (representative: YA)PANTHER:PTHR11709
Representative Members: YAUniProtKB:P17489

Function

hydroquinone:oxygen oxidoreductase activityGO:0052716

Conidial laccase (p-diphenol oxidase) converting the WA-derived pigment intermediate to the mature green pigment; yA mutants have yellow conidia.

Part 6: repressive gating (proliferation signaling and its attenuation)
G-protein proliferation signaling and FlbA attenuationRegulatory Steprepressive_gating

The heterotrimeric G protein (FadA-alpha, SfaD-beta, GpgA-gamma) promotes vegetative proliferation and represses conidiation; the RGS protein FlbA attenuates FadA signaling to license development. SfgA is a negative regulator downstream of FluG.

Annotons

FadA G-protein alpha subunit
fadA
Participant: Family: GTP-binding protein alpha subunit (representative: FadA)
Family:
GTP-binding protein alpha subunit (representative: FadA)PANTHER:PTHR10218
Representative Members: FadAUniProtKB:Q00743

Function

G protein activityGO:0003925

Galpha subunit; active GTP-bound FadA drives proliferation and blocks conidiation.

SfaD G-protein beta subunit
sfaD
Participant: Family: Guanine nucleotide-binding protein beta subunit (representative: SfaD)
Family:
Guanine nucleotide-binding protein beta subunit (representative: SfaD)PANTHER:PTHR19850
Representative Members: SfaDUniProtKB:Q5BH99

Gbeta subunit of the proliferation-promoting heterotrimeric G protein.

GpgA G-protein gamma subunit
gpgA
Participant: Family: Guanine nucleotide-binding protein gamma subunit (representative: GpgA)
Family:
Guanine nucleotide-binding protein gamma subunit (representative: GpgA)PANTHER:PTHR28189
Representative Members: GpgAUniProtKB:Q5B9N8

Ggamma subunit of the proliferation-promoting heterotrimeric G protein.

FlbA regulator of G-protein signaling
flbA
Participant: Family: Regulator of G-protein Signaling (representative: FlbA)
Family:
Regulator of G-protein Signaling (representative: FlbA)PANTHER:PTHR10845
Representative Members: FlbAUniProtKB:P38093

Function

GTPase activator activityGO:0005096

RGS protein that stimulates FadA GTP hydrolysis, dampening proliferation signaling so conidiation can proceed; flbA mutants are fluffy and aconidial.

SfgA negative regulator
sfgA
Participant: Gene Product: SfgA
Gene Product:

Function

DNA-binding transcription factor activityGO:0003700

Zn(II)2Cys6 negative regulator acting downstream of FluG and upstream of the Flb factors; FluG signaling relieves SfgA repression.

Neurospora crassa macroconidiation (fluffy / WCC-clock program)Developmental Processneurospora_macroconidiation

The Neurospora crassa realization: an analogous but non-orthologous program. Neurospora forms macroconidia by budding/fission of aerial hyphae rather than a brlA-type conidiophore. The blue-light White Collar Complex (WC-1/WC-2) and the circadian clock (FRQ) gate the timing of conidiation (the classic banding rhythm); the Gal4-type Zn(II)2Cys6 transcription factor FL (fluffy) is the central activator; conidiation-specific and rodlet (hydrophobin) genes provide structural output. Stage genes acon-2 and acon-3 control successive morphological steps. The staged cascade is acon-2 -> FL -> acon-3, conceptually parallel to Aspergillus BrlA -> AbaA -> WetA but built from non-orthologous families; whether acon-3 acts upstream of the conidiation-specific con genes is not established (see the acon-3 -> structural-output connection below).

conidium formationGO:0048315
Context
Neurospora crassaNCBITaxon:367110

Connections

neu_wcc_clock_gating -> neu_fl_activation Positively Regulates
Light (WCC) and the circadian clock gate induction of the FL-driven conidiation program.
neu_fl_activation -> neu_acon3_stage Positively Regulates
FL activation induces the ACON-3-dependent later-stage program.
neu_acon3_stage -> neu_structural_output Positively Regulates
ACON-3 acts at the later stage of the program, upstream of conidiation-specific / structural output (rodlet hydrophobin, con genes). Uncited - PMID:15126394 places acon-3 downstream of fl but does not establish an acon-3 -> con-gene link, and reports con-6/con-10 are NOT induced by fl-driven morphogenesis. This edge needs a primary acon-3 epistasis source.
neu_acon2 -> neu_fl Positively Regulates
ACON-2 (cAMP phosphodiesterase) acts upstream of FL to permit conidiation.
Part 1: light and circadian gating
Upstream signaling and gating (light/circadian and cAMP)Regulatory Stepneu_wcc_clock_gating

The blue-light photoreceptor White Collar Complex (WC-1/WC-2) and the circadian oscillator FRQ gate the timing/rhythm of conidiation; in parallel the cAMP phosphodiesterase ACON-2 dampens cAMP/PKA signaling, acting upstream of FL to permit conidiation.

Annotons

WC-1 blue-light photoreceptor / TF
neu_wc1
Participant: Family: Blue-light signal transduction (representative: WC-1)
Family:
Blue-light signal transduction (representative: WC-1)PANTHER:PTHR47429
Representative Members: WC-1UniProtKB:Q01371

Function

DNA-binding transcription factor activityGO:0003700

GATA-type, LOV-domain blue-light photoreceptor; with WC-2 forms the White Collar Complex that activates light-induced genes including conidiation and frq.

WC-2 White Collar Complex partner
neu_wc2
Participant: Family: GATA zinc finger domain-containing protein (representative: WC-2)
Family:
GATA zinc finger domain-containing protein (representative: WC-2)PANTHER:PTHR47172
Representative Members: WC-2UniProtKB:P78714

Function

DNA-binding transcription factor activityGO:0003700

GATA-type transcription factor partnering WC-1 in the White Collar Complex.

FRQ circadian clock protein
neu_frq
Participant: Gene Product: FRQ
Gene Product:

Core negative-feedback oscillator that, with the WCC, imposes circadian control on conidiation (banding rhythm).

ACON-2 cAMP phosphodiesterase gate
neu_acon2
Participant: Family: Cyclic nucleotide phosphodiesterase (representative: ACON-2)
Family:
Cyclic nucleotide phosphodiesterase (representative: ACON-2)PANTHER:PTHR11347
Representative Members: ACON-2UniProtKB:U9W570

Function

3',5'-cyclic-AMP phosphodiesterase activityGO:0004115

cAMP phosphodiesterase that dampens cAMP/PKA signaling and acts upstream of FL to permit conidiation.

Part 2: master activation
FL (fluffy) master activationRegulatory Stepneu_fl_activation

FL (fluffy), a Gal4-type Zn(II)2Cys6 transcription factor, is the central activator of the macroconidiation program; fl mutants grow as undifferentiated fluffy aerial hyphae.

Annotons

FL fluffy master regulator
neu_fl
Participant: Gene Product: FL (fluffy)
Gene Product:
FL (fluffy)UniProtKB:O13360

Function

DNA-binding transcription factor activityGO:0003700

Processes

conidium formationGO:0048315

Zn(II)2Cys6 transcription factor; the central positive regulator of macroconidiation (functional analog of the Aspergillus BrlA role, but non-orthologous). Acts with the stage regulators acon-2 and acon-3.

Part 3: stage regulation (downstream of FL)
ACON-3 stage regulationRegulatory Stepneu_acon3_stage

ACON-3 (MEDUSA/MedA family, DUF7082) acts downstream of FL and is required for later stages of macroconidiation; its position relative to the conidiation-specific con genes is not established.

Annotons

ACON-3 stage regulator
neu_acon3
Participant: Gene Product: ACON-3 (Acr1)
Gene Product:
ACON-3 (Acr1)UniProtKB:Q7SB37

Processes

conidium formationGO:0048315

Nuclear MEDUSA/MedA-family (DUF7082) regulator downstream of FL; required for later conidiation stages. Position relative to the con genes is unestablished. Molecular function uncharacterized.

Part 4: structural / conidiation-specific output
Conidiation-specific and rodlet structural outputBiological Processneu_structural_output

Conidiation-specific (con) genes and the EAS/CCG-2 class I hydrophobin build the mature macroconidium surface, including the rodlet layer.

Annotons

EAS/CCG-2 rodlet hydrophobin
neu_eas
Participant: Gene Product: EAS (CCG-2)
Gene Product:
EAS (CCG-2)UniProtKB:Q04571

Function

structural constituent of cell wallGO:0005199

Processes

asexual spore wall assemblyGO:0042243

Class I hydrophobin forming the conidial rodlet layer; clock-controlled (ccg-2).

CON-6 conidiation-specific protein
neu_con6
Participant: Family: UPF0654 domain-containing protein (representative: CON-6)
Family:
UPF0654 domain-containing protein (representative: CON-6)PANTHER:PTHR36576
Representative Members: CON-6UniProtKB:P34762

Conidiation-specific gene product accumulating during macroconidiation.

CON-10 conidiation-specific protein
neu_con10
Participant: Gene Product: CON-10
Gene Product:

Light- and development-regulated conidiation-specific gene product.