Creatine biosynthesis (vertebrate, two-step AGAT to GAMT)

De novo biosynthesis of creatine, the two-step pathway that supplies the phosphocreatine/creatine system used for cellular energy buffering in tissues with high and fluctuating ATP demand (skeletal and cardiac muscle, brain). The pathway is short and committed: L-arginine and glycine are first condensed by L-arginine:glycine amidinotransferase (AGAT/GATM) to give guanidinoacetate (GAA) and L-ornithine, then guanidinoacetate is methylated by guanidinoacetate N-methyltransferase (GAMT) using S-adenosyl-L-methionine (SAM) as the methyl donor to yield creatine and S-adenosyl-L-homocysteine (SAH). The two activities are characteristically split both by subcellular compartment and, in mammals, by organ: AGAT/GATM is a mitochondrial intermembrane-space enzyme and catalyses the first, committed, feedback- regulated step (creatine represses GATM), whereas GAMT is a cytosolic enzyme and is the second, methylation step. The first step is most active in kidney and pancreas and the second predominates in liver, so guanidinoacetate is an inter-organ intermediate that is exported and taken up before methylation; finished creatine is distributed in the blood and imported into target tissues by the creatine transporter SLC6A8. GAMT is also the largest single consumer of SAM-derived methyl groups in the body, tying creatine synthesis to one-carbon / methionine-cycle metabolism. Inherited deficiency of either enzyme (and of the SLC6A8 transporter) causes cerebral creatine-deficiency syndromes. Creatine utilization by the creatine kinases (the phosphocreatine shuttle and the "futile creatine cycle") is downstream of this module and is not part of the biosynthetic pathway itself.

MODULE:creatine_biosynthesisDRAFTMetabolic Pathwaymodules/creatine_biosynthesis.yaml
creatine biosynthetic processGO:0006601
GO:0006601
creatine biosynthetic process
The module is grounded in the GO biological-process term for creatine biosynthesis.
EC:2.1.4.1
glycine amidinotransferase
Step 1 (AGAT/GATM) corresponds to EC 2.1.4.1, L-arginine:glycine amidinotransferase (KEGG:R00565; MetaCyc:GLYCINE-AMIDINOTRANSFERASE-RXN).
EC:2.1.1.2
guanidinoacetate N-methyltransferase
Step 2 (GAMT) corresponds to EC 2.1.1.2, guanidinoacetate N-methyltransferase (KEGG:R01883; MetaCyc:GUANIDINOACETATE-N-METHYLTRANSFERASE-RXN).
file:human/GATM/GATM-ai-review.yaml
GATM gene review (human)
The GATM/AGAT molecular-function and creatine-biosynthesis groundings (GO:0015068, GO:0006601) match the completed human GATM review.
file:human/GAMT/GAMT-ai-review.yaml
GAMT gene review (human)
The GAMT molecular-function and creatine-biosynthesis groundings (GO:0030731, GO:0006601) match the completed human GAMT review.
3Nodes
2Parts
0Variant Sets
0Variants
2Annotons
1Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:creatine_biosynthesis deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (2/2 grounded genes reviewed)

2 complete review(s) · 0 with deep research · 0 missing review · 2 reviewed but lacking deep research

Gene Review Complete Deep research
GAMT Q14353
GATM P50440

Details

Context
mitochondrial intermembrane spaceGO:0005758 cytosolGO:0005829
Creatine biosynthesisMetabolic Pathwaycreatine_biosynthesis
creatine biosynthetic processGO:0006601
Context
mitochondrial intermembrane spaceGO:0005758 cytosolGO:0005829

Two-step vertebrate creatine biosynthesis grounded to the human enzymes GATM/AGAT (UniProtKB:P50440, GO:0015068, EC 2.1.4.1) and GAMT (UniProtKB:Q14353, GO:0030731, EC 2.1.1.2). GO molecular-function terms were verified via QuickGO; the GATM and GAMT groundings are consistent with the completed human GATM and GAMT reviews. Downstream creatine utilization (creatine kinases, phosphocreatine shuttle, the "futile creatine cycle"; e.g. GO-CAM gomodel:60ad85f700000898) and the SLC6A8 creatine transporter are deliberately excluded as they are not part of the biosynthetic pathway. The creatine kinase / phosphocreatine energy-buffer system that consumes the creatine made here is modelled separately in MODULE:phosphocreatine_shuttle.

Connections

agat_step -> gamt_step Provides Input For
Guanidinoacetate produced by AGAT/GATM is the substrate methylated by GAMT. In mammals the two steps are partly distributed across organs (kidney/pancreas to liver), so guanidinoacetate is an inter-organ intermediate.
Part 1: first committed step (amidino transfer)
L-arginine + glycine to guanidinoacetate + L-ornithineReactionagat_step

Annotons

GATM/AGAT: glycine amidinotransferase
gatm_activity
Participant: Gene: GATM (L-arginine:glycine amidinotransferase, AGAT)
Gene:
GATM (L-arginine:glycine amidinotransferase, AGAT)UniProtKB:P50440

Function

glycine amidinotransferase activityGO:0015068
Substrates: L-arginine glycine
Products: guanidinoacetate L-ornithine

Locations

mitochondrial intermembrane spaceGO:0005758

First and committed step of creatine biosynthesis: transfers the amidino group of L-arginine to glycine, producing guanidinoacetate and L-ornithine. Feedback-repressed by creatine, making this the regulated entry point of the pathway. Most active in kidney and pancreas.

Part 2: terminal methylation step
guanidinoacetate + SAM to creatine + SAHReactiongamt_step

Annotons

GAMT: guanidinoacetate N-methyltransferase
gamt_activity
Participant: Gene: GAMT (guanidinoacetate N-methyltransferase)
Gene:
GAMT (guanidinoacetate N-methyltransferase)UniProtKB:Q14353

Function

guanidinoacetate N-methyltransferase activityGO:0030731
Substrates: guanidinoacetate S-adenosyl-L-methionine (SAM)
Products: creatine S-adenosyl-L-homocysteine (SAH)

Locations

cytosolGO:0005829

Terminal step of creatine biosynthesis: SAM-dependent N-methylation of guanidinoacetate to creatine, releasing SAH. Predominates in liver and is a major consumer of SAM-derived methyl groups, linking creatine synthesis to the methionine / one-carbon cycle.