Dictyostelium DIF-1 response and prestalk gene activation

The transcriptional response to the morphogen DIF-1 that specifies prestalk/ stalk cell fate in Dictyostelium discoideum. DIF-1 (the chlorinated acylphloroglucinol produced by the dicty_dif1_biosynthesis module) is perceived by the basic-region leucine-zipper (bZIP) transcription factors DimA and DimB, which translocate to the nucleus and reprogram cell-type gene expression: DimA/DimB activate prestalk/stalk genes (the extracellular-matrix markers ecmA and ecmB) and repress prespore genes, so a cell exposed to DIF-1 commits to the prestalk pathway. The two bZIPs are partly redundant and heterodimerise, with DimB the principal activator of ecmB. This module is the RESPONSE arm; its input is the DIF-1 made by the separate biosynthesis module. OUT OF SCOPE: DIF-1 biosynthesis (dicty_dif1_biosynthesis module), the STATa/CudA culmination circuit (CudA is only indirectly DIF-1-linked), and DIF-1 catabolism. Phrased over transcription-factor functions and family selectors with D. discoideum representatives.

MODULE:dicty_dif1_response_prestalk_patterningDRAFTDevelopmental Processmodules/dicty_dif1_response_prestalk_patterning.yaml
cellular response to differentiation-inducing factor 1GO:1903014
GO:1903014
cellular response to differentiation-inducing factor 1
The module is grounded in cellular response to DIF-1 (GO:1903014); DimA and DimB carry this annotation.
file:DICDI/dimA/dimA-ai-review.yaml
dimA gene review (Dictyostelium discoideum)
DIF-1-responsive bZIP transcription factor grounding (UniProtKB:Q54XG7, GO:0003700 DNA-binding transcription factor activity).
file:DICDI/dimB/dimB-ai-review.yaml
dimB gene review (Dictyostelium discoideum)
DIF-1-responsive bZIP transcription factor grounding (UniProtKB:Q54ER9, GO:0003700); principal activator of ecmB and repressor of prespore genes.
file:DICDI/ecmA/ecmA-ai-review.yaml
ecmA gene review (Dictyostelium discoideum)
Prestalk extracellular-matrix marker grounding (UniProtKB:Q54YG2, GO:0005198 structural molecule activity); a DIF-1/DimA-DimB-induced output gene.
file:DICDI/ecmB/ecmB-ai-review.yaml
ecmB gene review (Dictyostelium discoideum)
Stalk extracellular-matrix marker grounding (UniProtKB:P11976, GO:0005198); a DIF-1/DimB-induced output gene.

Dictyostelium-specific developmental patterning module (the DIF-1 RESPONSE arm) grounded to the two bZIP transcription factors DimA (Q54XG7) and DimB (Q54ER9) and their extracellular-matrix output markers EcmA (Q54YG2) and EcmB (P11976). Paired with dicty_dif1_biosynthesis (which produces the DIF-1 input). CudA is intentionally excluded (it acts mainly downstream of STATa in culmination, not as a direct DIF-1 effector). GO molecular-function terms were taken from the completed DICDI reviews; nodes use PANTHER family selectors plus D. discoideum representative members. Named to signal Dictyostelium scope.

3Nodes
2Parts
0Variant Sets
0Variants
4Annotons
1Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dicty_dif1_response_prestalk_patterning deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (4/4 grounded genes reviewed)

4 complete review(s) · 0 with deep research · 0 missing review · 4 reviewed but lacking deep research

Gene Review Complete Deep research
dimA Q54XG7
dimB Q54ER9
ecmA Q54YG2
ecmB P11976

Details

DIF-1 response (DimA/DimB -> ecmA/ecmB prestalk genes)Developmental Processdicty_dif1_response_prestalk_patterning
cellular response to differentiation-inducing factor 1GO:1903014

Connections

dif1_responsive_tfs -> prestalk_ecm_genes Positively Regulates
DIF-1-activated DimA/DimB bind prestalk gene promoters and induce the ecmA/ecmB extracellular-matrix genes (while repressing prespore genes).
Part 1: DIF-1-responsive transcription factors
DimA and DimB bZIP transcription factors activated by DIF-1Regulatory Stepdif1_responsive_tfs

Annotons

DimA: DIF-1-responsive bZIP transcription factor
dima_activity
Participant: Family: CREB/ATF bZIP transcription factor family (DimA/DimB)
Family:
CREB/ATF bZIP transcription factor family (DimA/DimB)PANTHER:PTHR14312
Representative Members: DimA (Dictyostelium discoideum)UniProtKB:Q54XG7

Function

DNA-binding transcription factor activityGO:0003700

Locations

nucleusGO:0005634

bZIP transcription factor required for the DIF-1 response; heterodimerises with DimB and is needed for correct prestalk/prespore gene regulation.

DimB: DIF-1-responsive bZIP transcription factor
dimb_activity
Participant: Family: CREB/ATF bZIP transcription factor family (DimA/DimB)
Family:
CREB/ATF bZIP transcription factor family (DimA/DimB)PANTHER:PTHR14312
Representative Members: DimB (Dictyostelium discoideum)UniProtKB:Q54ER9

Function

DNA-binding transcription factor activityGO:0003700

Locations

nucleusGO:0005634

bZIP transcription factor that binds prestalk gene promoters (e.g. ecmB) as a dual-mode activator/repressor in the DIF-1 response.

Part 2: prestalk/stalk structural output genes
ecmA and ecmB extracellular-matrix genes induced by DIF-1Regulatory Stepprestalk_ecm_genes

Annotons

EcmA: prestalk extracellular-matrix protein
ecma_product
Participant: Family: Extracellular matrix protein A family (EcmA/EcmB)
Family:
Extracellular matrix protein A family (EcmA/EcmB)PANTHER:PTHR31797
Representative Members: EcmA (Dictyostelium discoideum)UniProtKB:Q54YG2

Function

structural molecule activityGO:0005198

Locations

extracellular regionGO:0005576

Secreted prestalk extracellular-matrix protein deposited in the slime sheath/stalk tube; a DIF-1-induced marker of prestalk fate.

EcmB: stalk extracellular-matrix protein
ecmb_product
Participant: Family: Extracellular matrix protein A family (EcmA/EcmB)
Family:
Extracellular matrix protein A family (EcmA/EcmB)PANTHER:PTHR31797
Representative Members: EcmB (Dictyostelium discoideum)UniProtKB:P11976

Function

structural molecule activityGO:0005198

Locations

extracellular regionGO:0005576

Secreted stalk-tube/lower-cup extracellular-matrix protein; a marker of terminal stalk differentiation induced via DimB.