Dictyostelium SDF-2 spore-encapsulation relay (AcbA-TagC-DhkA-RegA-PKA)

The non-cell-autonomous signalling relay that triggers rapid, synchronous encapsulation of prespore cells into spores during culmination in Dictyostelium discoideum. The acyl-CoA-binding protein AcbA is unconventionally secreted by prespore cells and cleaved at the prestalk cell surface by the ABC-transporter/ serine-protease TagC to release the peptide signal SDF-2. SDF-2 binds the membrane sensor histidine kinase DhkA and INHIBITS its phosphorelay; because DhkA (through the histidine-phosphotransfer protein RdeA) normally keeps the response-regulator cAMP phosphodiesterase RegA active, inhibiting DhkA lowers RegA activity, so intracellular cAMP rises and activates cAMP-dependent protein kinase (PKA-C released from PKA-R), which drives spore encapsulation. The net logic is a double negative — SDF-2 inhibits DhkA, DhkA activates RegA, RegA suppresses cAMP/PKA — so SDF-2 ultimately ACTIVATES encapsulation. The relay is self-amplifying (encapsulating cells release more AcbA). Phrased over functions and family selectors with D. discoideum representatives rather than a fixed gene list. OUT OF SCOPE: the parallel GABA/GrlE input that also triggers AcbA release (a separate module), the ACR/PKA culmination cAMP source, and spore-coat assembly. The histidine-phosphotransfer intermediate RdeA is described in the DhkA->RegA connection but is NOT separately grounded here because it has not yet been reviewed.

MODULE:dicty_sdf2_encapsulation_relayDRAFTSignaling Pathwaymodules/dicty_sdf2_encapsulation_relay.yaml
sporulation (spore encapsulation) triggered by SDF-2GO:0030435
GO:0030435
sporulation resulting in formation of a cellular spore
The relay's terminal output is spore encapsulation (GO:0030435); PKA activation downstream of the relay drives it.
file:DICDI/acbA/acbA-ai-review.yaml
acbA gene review (Dictyostelium discoideum)
SDF-2 precursor grounding (UniProtKB:Q5FXM5); AcbA is unconventionally secreted and processed to the SDF-2 sporulation signal.
file:DICDI/tagC/tagC-ai-review.yaml
tagC gene review (Dictyostelium discoideum)
SDF-2-releasing protease grounding (UniProtKB:Q23868, GO:0004252 serine-type endopeptidase activity); TagC cleaves secreted AcbA to release SDF-2.
file:DICDI/dhkA/dhkA-ai-review.yaml
dhkA gene review (Dictyostelium discoideum)
SDF-2 receptor grounding (UniProtKB:Q54U87, GO:0000155 phosphorelay sensor kinase activity); SDF-2 binding inhibits the DhkA phosphorelay (see the dhkA review's adjudication of the DhkA-RegA direction).
file:DICDI/rdeA/rdeA-ai-review.yaml
rdeA gene review (Dictyostelium discoideum)
Histidine-phosphotransfer intermediate grounding (UniProtKB:Q54RR8, GO:0009927 histidine phosphotransfer kinase activity); RdeA (His-65) relays phosphate from DhkA to RegA (Asp-212).
file:DICDI/regA/regA-ai-review.yaml
regA gene review (Dictyostelium discoideum)
cAMP-controlling node grounding (UniProtKB:Q23917, GO:0004115 cAMP phosphodiesterase activity); RegA degrades intracellular cAMP to keep PKA off until the relay lowers RegA activity.
file:DICDI/pkaR/pkaR-ai-review.yaml
pkaR gene review (Dictyostelium discoideum)
PKA regulatory subunit grounding (UniProtKB:P05987, GO:0004862 cAMP-dependent protein kinase inhibitor activity); PKA-R holds PKA-C inactive until cAMP rises.
file:DICDI/pkaC/pkaC-ai-review.yaml
pkaC gene review (Dictyostelium discoideum)
PKA catalytic subunit grounding (UniProtKB:P34099, GO:0004691 cAMP-dependent protein kinase activity); active PKA-C triggers spore encapsulation.

Dictyostelium-specific culmination signalling relay grounded to six reviewed proteins: AcbA (Q5FXM5), TagC (Q23868, GO:0004252), DhkA (Q54U87, GO:0000155), RegA (Q23917, GO:0004115), PKA-R (P05987, GO:0004862) and PKA-C (P34099, GO:0004691). GO molecular-function terms were taken from the completed DICDI reviews; each node uses a PANTHER family selector plus the D. discoideum representative member. The DhkA->RegA direction follows the Wang/Anjard-Loomis inhibition model adopted in the dhkA review (SDF-2 inhibits DhkA, lowering RegA and raising cAMP/PKA); the alternative Tekinay model is recorded as contested there. The histidine-phosphotransfer intermediate RdeA (Q54RR8, GO:0009927) is now grounded as its own node (rdea_relay) between DhkA and RegA, following the completed rdeA review. Named to signal Dictyostelium scope so it does not collide with a generic two-component / cAMP-PKA signalling module.

6Nodes
5Parts
0Variant Sets
0Variants
7Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dicty_sdf2_encapsulation_relay deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

7 gene-function check(s) reflected in core functions · 0 conflict(s) · 7 evidence or coverage gap(s) (14 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
acba_precursor AcbA (Dictyostelium discoideum)
UniProtKB:Q5FXM5
Family Representative
fatty-acyl-CoA binding
GO:0000062
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
tagc_protease TagC (Dictyostelium discoideum)
UniProtKB:Q23868
Family Representative
serine-type endopeptidase activity
GO:0004252
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
dhka_activity DhkA (Dictyostelium discoideum)
UniProtKB:Q54U87
Family Representative
phosphorelay sensor kinase activity
GO:0000155
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
rdea_activity RdeA (Dictyostelium discoideum)
UniProtKB:Q54RR8
Family Representative
histidine phosphotransfer kinase activity
GO:0009927
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
rega_activity RegA (Dictyostelium discoideum)
UniProtKB:Q23917
Family Representative
cAMP phosphodiesterase activity
GO:0004115
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
pkar_activity PkaR (Dictyostelium discoideum)
UniProtKB:P05987
Family Representative
cAMP-dependent protein kinase inhibitor activity
GO:0004862
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
pkac_activity PkaC (Dictyostelium discoideum)
UniProtKB:P34099
Family Representative
cAMP-dependent protein kinase activity
GO:0004691
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
acba_precursor Acyl-CoA-binding protein family (AcbA)
PANTHER:PTHR23310
Family
fatty-acyl-CoA binding
GO:0000062
Family Review Missing
No supported structured family review is available for PANTHER:PTHR23310.
tagc_protease ABC-transporter / serine-protease family (TagC)
Family
serine-type endopeptidase activity
GO:0004252
Family Id Missing
The family has no identifier linking it to a curated family review.
dhka_activity Two-component sensor histidine kinase family (DhkA)
PANTHER:PTHR43719
Family
phosphorelay sensor kinase activity
GO:0000155
Family Review Missing
No supported structured family review is available for PANTHER:PTHR43719.
rdea_activity Histidine-phosphotransfer (HPt / H2-module) protein family (RdeA)
PANTHER:PTHR28242
Family
histidine phosphotransfer kinase activity
GO:0009927
Family Review Missing
No supported structured family review is available for PANTHER:PTHR28242.
rega_activity Cyclic-nucleotide phosphodiesterase family (RegA)
PANTHER:PTHR11347
Family
cAMP phosphodiesterase activity
GO:0004115
Family Function Unreviewed
The family review has no applicable adjudication supporting or excluding GO:0004115.
pkar_activity cAMP-dependent protein kinase regulatory subunit family (PKA-R)
PANTHER:PTHR11635
Family
cAMP-dependent protein kinase inhibitor activity
GO:0004862
Family Review Missing
No supported structured family review is available for PANTHER:PTHR11635.
pkac_activity cAMP-dependent protein kinase catalytic subunit family (PKA-C)
PANTHER:PTHR24353
Family
cAMP-dependent protein kinase activity
GO:0004691
Family Review Missing
No supported structured family review is available for PANTHER:PTHR24353.

Feedback loops (advisory, prose-driven: a regulator counts as "feedback" when its own description says so)

✓ every negative regulator described as feedback has an upstream edge closing the loop.

  • sdf2_production ⊣ dhka_sensing [input]
    sdf2_production is a negative regulator with no upstream edge (not described as feedback)
  • rega_step ⊣ pka_activation [closed]
    rega_step is regulated by rdea_relay: feedback loop closed

Gene-review completeness (7/7 grounded genes reviewed)

5 complete review(s) · 0 with deep research · 0 missing review · 7 reviewed but lacking deep research

Gene Review Complete Deep research
acbA Q5FXM5 ✓ ✓ ✗
dhkA Q54U87 ✓ ✓ ✗
pkaC P34099 ✓ 52/54 ✗
pkaR P05987 ✓ ✓ ✗
rdeA Q54RR8 ✓ ✓ ✗
regA Q23917 ✓ 30/31 ✗
tagC Q23868 ✓ ✓ ✗

Details

Context
Dictyostelium discoideumNCBITaxon:44689
SDF-2 encapsulation relay (AcbA -> TagC -> DhkA -| RegA -| cAMP/PKA)Signaling Pathwaydicty_sdf2_encapsulation_relay
sporulation (spore encapsulation) triggered by SDF-2GO:0030435
Context
Dictyostelium discoideumNCBITaxon:44689

Connections

sdf2_production -> dhka_sensing Negatively Regulates
The SDF-2 peptide released by TagC from secreted AcbA binds DhkA and inhibits its autophosphorylation/phosphorelay.
dhka_sensing -> rdea_relay Positively Regulates
Active (uninhibited) DhkA autophosphorylates and passes phosphate to the His-65 of the RdeA phosphotransfer intermediate.
rdea_relay -> rega_step Positively Regulates
Phospho-RdeA transfers phosphate to the RegA receiver aspartate (Asp-212), keeping RegA phosphodiesterase active. SDF-2 inhibition of DhkA reduces flux through RdeA and so lowers RegA activity.
rega_step -> pka_activation Negatively Regulates
RegA degrades intracellular cAMP, holding PKA inactive. When SDF-2 inhibition of DhkA lowers RegA activity, cAMP rises and PKA-C is released from PKA-R, triggering encapsulation. Net double-negative — SDF-2 activates encapsulation.
Part 1: SDF-2 signal generation (secretion and proteolytic release)
secreted AcbA cleaved by TagC to release the SDF-2 peptideReactionsdf2_production

Annotons

AcbA: acyl-CoA-binding protein / SDF-2 precursor
acba_precursor
Participant: Family: Acyl-CoA-binding protein family (AcbA)
Family:
Acyl-CoA-binding protein family (AcbA)PANTHER:PTHR23310
Representative Members: AcbA (Dictyostelium discoideum)UniProtKB:Q5FXM5

Function

fatty-acyl-CoA bindingGO:0000062

Locations

extracellular regionGO:0005576

Acyl-CoA-binding protein that is unconventionally secreted by prespore cells; its processed peptide is the SDF-2 sporulation signal. Its intrinsic molecular function is acyl-CoA binding.

TagC: cell-surface serine protease that releases SDF-2
tagc_protease
Participant: Family: ABC-transporter / serine-protease family (TagC)
Family:
ABC-transporter / serine-protease family (TagC)
Representative Members: TagC (Dictyostelium discoideum)UniProtKB:Q23868

Function

serine-type endopeptidase activityGO:0004252
Substrates: secreted AcbA (acyl-CoA-binding protein)
Products: SDF-2 peptide

Locations

plasma membraneGO:0005886

Prestalk cell-surface protein whose serine-protease domain cleaves secreted AcbA to liberate the diffusible SDF-2 peptide.

Part 2: SDF-2 sensing by the DhkA receptor histidine kinase
SDF-2 binding inhibits DhkA autophosphorylation / phosphorelayRegulatory Stepdhka_sensing

Annotons

DhkA: SDF-2 receptor sensor histidine kinase
dhka_activity
Participant: Family: Two-component sensor histidine kinase family (DhkA)
Family:
Two-component sensor histidine kinase family (DhkA)PANTHER:PTHR43719
Representative Members: DhkA (Dictyostelium discoideum)UniProtKB:Q54U87

Function

phosphorelay sensor kinase activityGO:0000155

Locations

plasma membraneGO:0005886

Membrane-spanning sensor histidine kinase that binds SDF-2 through its extracellular loop; ligand binding inhibits its autophosphorylation and downstream phosphorelay.

Part 3: histidine-phosphotransfer relay from DhkA to RegA
DhkA phosphorylates RdeA (His-65), which relays phosphate to RegA (Asp-212)Regulatory Steprdea_relay

Annotons

RdeA: histidine-phosphotransfer (HPt) relay intermediate
rdea_activity
Participant: Family: Histidine-phosphotransfer (HPt / H2-module) protein family (RdeA)
Family:
Histidine-phosphotransfer (HPt / H2-module) protein family (RdeA)PANTHER:PTHR28242
Representative Members: RdeA (Dictyostelium discoideum)UniProtKB:Q54RR8

Function

histidine phosphotransfer kinase activityGO:0009927

Locations

cytosolGO:0005829

Cytosolic HPt intermediate that accepts phosphate on His-65 from the sensor kinase DhkA and transfers it to the RegA receiver aspartate, keeping RegA active; SDF-2 inhibition of DhkA reduces this flux.

Part 4: RegA control of intracellular cAMP
RegA phosphodiesterase degrades cAMP while DhkA/RdeA keep it activeRegulatory Steprega_step

Annotons

RegA: response-regulator cAMP phosphodiesterase
rega_activity
Participant: Family: Cyclic-nucleotide phosphodiesterase family (RegA)
Family:
Cyclic-nucleotide phosphodiesterase family (RegA)PANTHER:PTHR11347
Representative Members: RegA (Dictyostelium discoideum)UniProtKB:Q23917

Function

cAMP phosphodiesterase activityGO:0004115
Substrates: 3',5'-cyclic AMP
Products: AMP

Locations

cytosolGO:0005829

Response-regulator cAMP phosphodiesterase; its receiver domain is kept phosphorylated (active) by the DhkA phosphorelay through the RdeA histidine-phosphotransfer protein, so degrading cAMP and holding PKA off until SDF-2 inhibits DhkA.

Part 5: PKA activation and spore encapsulation
rising cAMP releases PKA-C from PKA-R to trigger encapsulationRegulatory Steppka_activation

Annotons

PKA-R: cAMP-dependent protein kinase regulatory subunit
pkar_activity
Participant: Family: cAMP-dependent protein kinase regulatory subunit family (PKA-R)
Family:
cAMP-dependent protein kinase regulatory subunit family (PKA-R)PANTHER:PTHR11635
Representative Members: PkaR (Dictyostelium discoideum)UniProtKB:P05987

Function

cAMP-dependent protein kinase inhibitor activityGO:0004862

Locations

cytosolGO:0005829

Regulatory subunit that binds and inhibits the PKA catalytic subunit; cAMP binding to PKA-R releases active PKA-C.

PKA-C: cAMP-dependent protein kinase catalytic subunit
pkac_activity
Participant: Family: cAMP-dependent protein kinase catalytic subunit family (PKA-C)
Family:
cAMP-dependent protein kinase catalytic subunit family (PKA-C)PANTHER:PTHR24353
Representative Members: PkaC (Dictyostelium discoideum)UniProtKB:P34099

Function

cAMP-dependent protein kinase activityGO:0004691

Locations

cytosolGO:0005829

Catalytic subunit whose activation by cAMP is the master switch for terminal spore encapsulation during culmination.