Dictyostelium starvation / growth-to-development initiation

The switch that commits starving Dictyostelium discoideum cells to development. Two inputs converge. (1) Density sensing: growing and early-starving cells secrete conditioned-medium factor (CMF, cmfA); only when CMF accumulates above a threshold (i.e. enough cells are present) can cells respond to cAMP pulses and aggregate, coupling cell density to developmental onset. (2) The growth-to-development kinase: on starvation the DYRK-family dual-specificity kinase YakA arrests the cell cycle and drives developmental initiation, in part by down-regulating the Pumilio-family translational repressor PufA; PufA normally binds the pkaC (PKA catalytic subunit) mRNA and represses its translation, so relieving PufA de-represses PKA-C, and rising PKA activity turns on early developmental gene expression and the cAMP-signalling machinery. The net YakA -| PufA -| pkaC logic is a double negative — YakA activates PKA. OUT OF SCOPE: the downstream cAMP relay (dicty_extracellular_camp_relay) and PKA's many later developmental roles; the CMF receptor CMFR1 (not yet reviewed). Phrased over functions and family selectors with D. discoideum representatives.

MODULE:dicty_starvation_initiationDRAFTSignaling Pathwaymodules/dicty_starvation_initiation.yaml
aggregation involved in sorocarp developmentGO:0031152
GO:0031152
aggregation involved in sorocarp development
The module's output is entry into the developmental (aggregation) program (GO:0031152) on starvation and sufficient density.
file:DICDI/cmfA/cmfA-ai-review.yaml
cmfA gene review (Dictyostelium discoideum)
Density-sensing signal grounding (UniProtKB:P34090, GO:0048018 receptor ligand activity); secreted CMF gates the cAMP response.
file:DICDI/yakA/yakA-ai-review.yaml
yakA gene review (Dictyostelium discoideum)
Growth-to-development kinase grounding (UniProtKB:Q54QV3, GO:0004712 protein serine/threonine/tyrosine kinase activity).
file:DICDI/pufA/pufA-ai-review.yaml
pufA gene review (Dictyostelium discoideum)
Translational repressor grounding (UniProtKB:Q54WA7, GO:0003730 mRNA 3'-UTR binding); PufA represses pkaC translation.
file:DICDI/pkaC/pkaC-ai-review.yaml
pkaC gene review (Dictyostelium discoideum)
PKA catalytic subunit grounding (UniProtKB:P34099, GO:0004691); its de-repression drives developmental onset.

Dictyostelium-specific growth-to-development initiation module grounded to CMF (P34090), YakA (Q54QV3), PufA (Q54WA7) and PKA-C (P34099). GO molecular-function terms were taken from the completed DICDI reviews; nodes use PANTHER family selectors plus D. discoideum representative members, except CMF which has no PANTHER family and uses a GENE selector. The YakA -| PufA -| pkaC double-negative logic follows the pufA/yakA reviews. CMF is a parallel density-permission input. Named to signal Dictyostelium scope.

5Nodes
4Parts
0Variant Sets
0Variants
4Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dicty_starvation_initiation deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (4/4 grounded genes reviewed)

3 complete review(s) · 0 with deep research · 0 missing review · 4 reviewed but lacking deep research

Gene Review Complete Deep research
cmfA P34090
pkaC P34099 52/54
pufA Q54WA7
yakA Q54QV3

Details

Starvation initiation (CMF density gate; YakA -| PufA -| pkaC)Signaling Pathwaydicty_starvation_initiation
aggregation involved in sorocarp developmentGO:0031152

Connections

cmf_sensing -> yaka_switch Positively Regulates
CMF-reported sufficient density permits the developmental response; a parallel density gate acting alongside the YakA starvation switch.
yaka_switch -> pufa_repression Negatively Regulates
YakA down-regulates the PufA translational repressor at the growth-to-development transition.
pufa_repression -> pka_derepression Negatively Regulates
PufA represses pkaC translation; as YakA lowers PufA, pkaC is de-repressed and PKA-C activity rises (net YakA -| PufA -| pkaC double negative).
Part 1: cell-density sensing (quorum permission)
secreted CMF signals sufficient cell densityRegulatory Stepcmf_sensing

Annotons

CMF (cmfA): conditioned-medium factor / density signal
cmf_activity
Participant: Gene: Conditioned medium factor (CMF)
Gene:
Conditioned medium factor (CMF)UniProtKB:P34090

Function

receptor ligand activityGO:0048018

Locations

extracellular regionGO:0005576

Secreted glycoprotein whose accumulation reports cell density; above threshold it licenses cells to respond to cAMP pulses and aggregate.

Part 2: growth-to-development kinase switch
YakA arrests growth and initiates development on starvationRegulatory Stepyaka_switch

Annotons

YakA: DYRK-family growth-to-development kinase
yaka_activity
Participant: Family: DYRK dual-specificity protein kinase family (YakA)
Family:
DYRK dual-specificity protein kinase family (YakA)PANTHER:PTHR24058
Representative Members: YakA (Dictyostelium discoideum)UniProtKB:Q54QV3

Function

protein serine/threonine/tyrosine kinase activityGO:0004712

Locations

cytosolGO:0005829

DYRK-family dual-specificity kinase that couples starvation to cell-cycle arrest and developmental initiation, down-regulating PufA.

Part 3: translational repression of PKA (relieved by YakA)
PufA represses pkaC mRNA translationRegulatory Steppufa_repression

Annotons

PufA: Pumilio-family translational repressor of pkaC
pufa_activity
Participant: Family: Pumilio/PUF RNA-binding protein family (PufA)
Family:
Pumilio/PUF RNA-binding protein family (PufA)PANTHER:PTHR12537
Representative Members: PufA (Dictyostelium discoideum)UniProtKB:Q54WA7

Function

mRNA 3'-UTR bindingGO:0003730

Locations

cytosolGO:0005829

Pumilio/PUF-family sequence-specific mRNA-binding protein that represses pkaC translation; its down-regulation by YakA de-represses PKA-C.

Part 4: PKA de-repression and developmental onset
de-repressed PKA-C activity drives developmental gene expressionRegulatory Steppka_derepression

Annotons

PKA-C (pkaC): cAMP-dependent protein kinase catalytic subunit
pkac_activity_init
Participant: Family: cAMP-dependent protein kinase catalytic subunit family (PKA-C)
Family:
cAMP-dependent protein kinase catalytic subunit family (PKA-C)PANTHER:PTHR24353
Representative Members: PkaC (Dictyostelium discoideum)UniProtKB:P34099

Function

cAMP-dependent protein kinase activityGO:0004691

Locations

cytosolGO:0005829

Catalytic subunit whose translation is de-repressed as PufA falls; rising PKA activity turns on early developmental gene expression and the cAMP-signalling machinery.