Basement membrane laminin and collagen network in Drosophila melanogaster

Basement membranes are sheet-like extracellular matrices beneath epithelia and around muscles and organs. Their two self-assembling networks are made of laminin and type IV collagen. Drosophila has two laminin trimers, each made of one alpha chain (LanA or Wing blister) with the shared beta (LanB1) and gamma (LanB2) chains; laminins polymerise at the cell surface and initiate basement membrane assembly. Type IV collagen trimers of Col4a1 and Viking are made mainly by the fat body and hemocytes and then incorporated into basement membranes, where they form a cross-linked network that gives strength and shapes organs. Multiplexin (the collagen XV/XVIII homolog) and Pericardin (a collagen IV-like protein of the cardiac extracellular matrix) are additional collagens grouped with them.

MODULE:dmel_basement_membrane_networkDRAFTCONCRETECellular Componentmodules/dmel_basement_membrane_network.yaml
basement membraneGO:0005604
FB:FBgg0001185
FlyBase gene group COL: Collagens
FlyBase release FB2026_03 groups 4 D. melanogaster genes as collagens (COL); this module models that group.
FB:FBgg0001190
FlyBase gene group LMN: Laminins
FlyBase release FB2026_03 groups 4 D. melanogaster genes as laminins (LMN); this module models that group.
GO:0005604
basement membrane
GO term grounding the module as basement membrane.

Boundary. The module joins the FlyBase collagen and laminin groups. Other core basement membrane components, perlecan (trol), nidogen (Ndg) and SPARC, are not in these groups and are not added; the collagen IV cross-linking peroxidasin (Pxn) and the collagen-processing enzymes are also outside the module. The laminin alpha-chain composition is shown as two variants that share LanB1 and LanB2. Pericardin is grouped by FlyBase as a collagen and is found mainly in the cardiac and pericardial matrix rather than in all basement membranes. The connection from laminin to collagen IV summarises the assembly order shown for Drosophila embryos and is not a metabolic step. FlyBase groups realized by this module: COL (FBgg0001185), LMN (FBgg0001190). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_basement_membrane_network.yaml. None of the member genes has a gene review in this repository yet.

6Nodes
3Parts
1Variant Sets
2Variants
5Annotons
1Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_basement_membrane_network deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Reaction chaining (advisory)

✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.

  • laminins → collagen_iv [NOT_CHECKED]

Function consistency and core coverage

0 gene-function check(s) reflected in core functions · 0 conflict(s) · 1 evidence or coverage gap(s) (4 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
laminin_lana_complex PROTEIN_COMPLEX
Gene
extracellular matrix structural constituent
GO:0005201
Participant Unchecked
No direct UniProt participant to compare. Abstract selectors and complex-wide activities cannot be inferred from donor or subunit gene reviews.
laminin_wb_complex PROTEIN_COMPLEX
Gene
extracellular matrix structural constituent
GO:0005201
Participant Unchecked
No direct UniProt participant to compare. Abstract selectors and complex-wide activities cannot be inferred from donor or subunit gene reviews.
collagen_iv_complex PROTEIN_COMPLEX
Gene
extracellular matrix structural constituent conferring tensile strength
GO:0030020
Participant Unchecked
No direct UniProt participant to compare. Abstract selectors and complex-wide activities cannot be inferred from donor or subunit gene reviews.
other_collagens_prc prc
UniProtKB:Q9VTR6
Gene
extracellular matrix structural constituent
GO:0005201
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.

Gene-review completeness (0/8 grounded genes reviewed)

0 complete review(s) · 0 with deep research · 8 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
Mp M9ND55 ✗ — —
Col4a1 P08120 ✗ — —
LanB1 P11046 ✗ — —
LanB2 P15215 ✗ — —
LanA Q00174 ✗ — —
wb Q8IP51 ✗ — —
vkg Q9VMV5 ✗ — —
prc Q9VTR6 ✗ — —

Details

Context
Drosophila melanogasterNCBITaxon:7227
Basement membrane networkCellular Componentdmel_basement_membrane_network

Laminin trimers and type IV collagen networks, with the collagens Multiplexin and Pericardin, that form Drosophila basement membranes.

basement membraneGO:0005604
Context
Drosophila melanogasterNCBITaxon:7227

Connections

laminins -> collagen_iv Precedes
Laminin polymers are needed for subsequent incorporation of collagen IV into the basement membrane.
Part 1: laminin network that initiates basement membrane assembly
Laminin trimersProtein Complexlaminins
Variant set: Laminin trimers with different alpha chains (One Or More)
Laminin A trimer (LanA-LanB1-LanB2)Protein Complexlaminin_lana

Annotons

Laminin A trimer (LanA-LanB1-LanB2)
laminin_lana_complex
Participant: Protein Complex: Laminin A trimer (LanA-LanB1-LanB2)
Protein Complex:
Laminin A trimer (LanA-LanB1-LanB2)GO:0043256
Active units:
LanA
Participant: Gene Product: LanA
Gene Product:
LanB1
Participant: Gene Product: LanB1
Gene Product:
LanB2
Participant: Gene Product: LanB2
Gene Product:

Function

extracellular matrix structural constituentGO:0005201
Laminin W trimer (Wb-LanB1-LanB2)Protein Complexlaminin_wb

Annotons

Laminin W trimer (Wb-LanB1-LanB2)
laminin_wb_complex
Participant: Protein Complex: Laminin W trimer (Wb-LanB1-LanB2)
Protein Complex:
Laminin W trimer (Wb-LanB1-LanB2)GO:0043256
Active units:
wb
Participant: Gene Product: wb
Gene Product:
LanB1
Participant: Gene Product: LanB1
Gene Product:
LanB2
Participant: Gene Product: LanB2
Gene Product:

Function

extracellular matrix structural constituentGO:0005201
Part 2: collagen IV network
Type IV collagen trimerProtein Complexcollagen_iv

Annotons

Type IV collagen trimer
collagen_iv_complex
Participant: Protein Complex: Type IV collagen trimer
Protein Complex:
Type IV collagen trimerGO:0005587
Active units:
Col4a1
Participant: Gene Product: Col4a1
Gene Product:
vkg
Participant: Gene Product: vkg
Gene Product:

Function

extracellular matrix structural constituent conferring tensile strengthGO:0030020
Part 3: additional basement membrane and cardiac matrix collagens
Multiplexin and PericardinModuleother_collagens

Annotons

Mp Multiplexin and Pericardin
other_collagens_mp
Participant: Gene Product: Mp
Gene Product:

collagen XV/XVIII homolog

prc Multiplexin and Pericardin
other_collagens_prc
Participant: Gene Product: prc
Gene Product:

Function

extracellular matrix structural constituentGO:0005201

collagen IV-like protein of the heart extracellular matrix