COPII coat in Drosophila melanogaster

The COPII coat forms vesicles and tubules that export secretory cargo from endoplasmic reticulum exit sites to the Golgi apparatus. The small GTPase Sar1, activated by its ER-membrane exchange factor, inserts into the membrane and recruits the inner coat, a heterodimer of Sec23 and Sec24. Sec24 binds cargo sorting signals, and Sec23 is the GTPase-activating protein for Sar1. The inner coat then recruits the outer coat of Sec13 and Sec31, which forms a cage around the bud and stimulates Sec23 GAP activity. Drosophila has two Sec24 paralogs, Sec24AB and Sec24CD.

MODULE:dmel_copii_coatDRAFTCONCRETEProtein Complexmodules/dmel_copii_coat.yaml
COPII vesicle coatGO:0030127
FB:FBgg0000116
FlyBase gene group COPII: Coat protein complex ii
FlyBase release FB2026_03 groups 6 D. melanogaster genes as coat protein complex ii (COPII); this module models that group.
GO:0030127
COPII vesicle coat
GO term grounding the module as COPII vesicle coat.

Boundary. The module contains Sar1 and the inner and outer coat proteins. The Sar1 exchange factor (Sec12 homolog), Sec16 and the TANGO1 machinery for large cargo organize exit sites and are context, not parts. The two Sec24 paralogs are modelled as alternative inner-coat variants; their cargo preferences in Drosophila are not fully mapped. FlyBase groups realized by this module: COPII (FBgg0000116). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_copii_coat.yaml. None of the member genes has a gene review in this repository yet.

6Nodes
3Parts
1Variant Sets
2Variants
4Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_copii_coat deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Reaction chaining (advisory)

✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.

  • sar1_gtpase → inner_coat [NOT_CHECKED]
  • inner_coat → outer_coat [NOT_CHECKED]

Function consistency and core coverage

0 gene-function check(s) reflected in core functions · 0 conflict(s) · 3 evidence or coverage gap(s) (3 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
sar1_gtpase_sar1 Sar1
UniProtKB:Q9VD29
Gene
GTPase activity
GO:0003924
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
sec23_sec24ab_complex/sec23 Sec23
UniProtKB:A0A0B4K5Z8
Complex Unit
GTPase activator activity
GO:0005096
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
sec23_sec24cd_complex/sec23 Sec23
UniProtKB:A0A0B4K5Z8
Complex Unit
GTPase activator activity
GO:0005096
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.

Feedback loops (advisory, prose-driven: a regulator counts as "feedback" when its own description says so)

✓ every negative regulator described as feedback has an upstream edge closing the loop.

  • inner_coat ⊣ sar1_gtpase [closed]
    inner_coat is regulated by sar1_gtpase: feedback loop closed

Gene-review completeness (0/6 grounded genes reviewed)

0 complete review(s) · 0 with deep research · 6 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
Sec23 A0A0B4K5Z8 ✗ — —
Sec31 A0A0B4LEZ1 ✗ — —
Sec24AB A1Z813 ✗ — —
Sec24CD M9PC99 ✗ — —
Sec13 Q9V3J4 ✗ — —
Sar1 Q9VD29 ✗ — —

Details

Context
Drosophila melanogasterNCBITaxon:7227
endoplasmic reticulum membraneGO:0005789
COPII coatProtein Complexdmel_copii_coat

Sar1, Sec23-Sec24 and Sec13-Sec31 coat that packages cargo into vesicles at ER exit sites for transport to the Golgi.

COPII vesicle coatGO:0030127
Context
Drosophila melanogasterNCBITaxon:7227
endoplasmic reticulum membraneGO:0005789

Connections

sar1_gtpase -> inner_coat Precedes
GTP-bound Sar1 recruits the Sec23-Sec24 inner coat to the ER membrane.
inner_coat -> outer_coat Precedes
The inner coat recruits the Sec13-Sec31 outer coat.
inner_coat -> sar1_gtpase Negatively Regulates
Sec23 stimulates GTP hydrolysis by Sar1, driving coat turnover.
Part 1: coat recruitment GTPase
Sar1 GTPaseProtein Complexsar1_gtpase

Annotons

Sar1 Sar1 GTPase
sar1_gtpase_sar1
Participant: Gene Product: Sar1
Gene Product:

Function

GTPase activityGO:0003924

Processes

endoplasmic reticulum to Golgi vesicle-mediated transportGO:0006888
Part 2: cargo selection and Sar1 GTPase activation
Sec23-Sec24 inner coatProtein Complexinner_coat
Variant set: Sec23 with Sec24AB or Sec24CD (One Or More)
Sec23-Sec24AB inner coatProtein Complexsec23_sec24ab

Annotons

Sec23-Sec24AB inner coat
sec23_sec24ab_complex
Participant: Protein Complex: Sec23-Sec24AB inner coat
Protein Complex:
Sec23-Sec24AB inner coat
Active units:
Sec23
Participant: Gene Product: Sec23
Gene Product:
Function:
GTPase activator activityGO:0005096
Sec24AB
Participant: Gene Product: Sec24AB
Gene Product:
Sec23-Sec24CD inner coatProtein Complexsec23_sec24cd

Annotons

Sec23-Sec24CD inner coat
sec23_sec24cd_complex
Participant: Protein Complex: Sec23-Sec24CD inner coat
Protein Complex:
Sec23-Sec24CD inner coat
Active units:
Sec23
Participant: Gene Product: Sec23
Gene Product:
Function:
GTPase activator activityGO:0005096
Sec24CD
Participant: Gene Product: Sec24CD
Gene Product:
Part 3: outer cage
Sec13-Sec31 outer coatProtein Complexouter_coat

Annotons

Sec13-Sec31 outer coat
outer_coat_complex
Participant: Protein Complex: Sec13-Sec31 outer coat
Protein Complex:
Sec13-Sec31 outer coat
Active units:
Sec13
Participant: Gene Product: Sec13
Gene Product:
Sec31
Participant: Gene Product: Sec31
Gene Product: