GDP-mannose biosynthesis in Drosophila melanogaster

GDP-mannose is the mannose donor for N-glycan precursor assembly, GPI anchors and protein O-mannosylation (through dolichol-phosphate-mannose), and the precursor of GDP-fucose. It is made in the cytosol from hexose 6-phosphates. Hexokinases phosphorylate glucose or mannose; glucose 6-phosphate is isomerized to fructose 6-phosphate by glucose-6-phosphate isomerase (Pgi), and mannose-6-phosphate isomerase (Mpi) interconverts fructose 6-phosphate and mannose 6-phosphate. Phosphomannomutase (Pmm2) converts mannose 6-phosphate to mannose 1-phosphate, and GDP-mannose pyrophosphorylase, formed by the catalytic subunit Gmppb and the regulatory subunit Gmppa, condenses mannose 1-phosphate with GTP to make GDP-mannose.

MODULE:dmel_gdp_mannose_biosynthesisDRAFTCONCRETEMetabolic Pathwaymodules/dmel_gdp_mannose_biosynthesis.yaml
GDP-mannose biosynthetic processGO:0009298
FB:FBgg0002055
FlyBase gene group MANGPG: Gdp-mannose biosynthesis
FlyBase release FB2026_03 groups 7 D. melanogaster genes as gdp-mannose biosynthesis (MANGPG); this module models that group.
GO:0009298
GDP-mannose biosynthetic process
GO term grounding the module as GDP-mannose biosynthetic process.

Boundary. The module covers the seven FlyBase members. Pgi and the hexokinases are shared with glycolysis and act in many pathways; they are included because FlyBase places them in this group. The Gmppa-Gmppb pyrophosphorylase is modelled as one complex. Use of GDP-mannose for GDP-fucose synthesis is modelled in the GDP-fucose biosynthesis module. FlyBase groups realized by this module: MANGPG (FBgg0002055). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_gdp_mannose_biosynthesis.yaml. None of the member genes has a gene review in this repository yet.

6Nodes
5Parts
0Variant Sets
0Variants
6Annotons
5Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_gdp_mannose_biosynthesis deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Reaction chaining (advisory)

✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.

  • hexose_phosphorylation → glucose_phosphate_isomerization [NOT_CHECKED]
  • glucose_phosphate_isomerization → mannose_phosphate_isomerization [NOT_CHECKED]
  • hexose_phosphorylation → phosphomannomutation [NOT_CHECKED]
  • mannose_phosphate_isomerization → phosphomannomutation [NOT_CHECKED]
  • phosphomannomutation → gdp_mannose_pyrophosphorylase [NOT_CHECKED]

Function consistency and core coverage

0 gene-function check(s) reflected in core functions · 0 conflict(s) · 6 evidence or coverage gap(s) (6 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
hexose_phosphorylation_hex_a Hex-A
UniProtKB:Q9W330
Gene
hexokinase activity
GO:0004396
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
hexose_phosphorylation_hex_c Hex-C
UniProtKB:A1Z9Z2
Gene
hexokinase activity
GO:0004396
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
glucose_phosphate_isomerization_pgi Pgi
UniProtKB:P52029
Gene
glucose-6-phosphate isomerase activity
GO:0004347
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
mannose_phosphate_isomerization_mpi Mpi
UniProtKB:Q9VH77
Gene
mannose-6-phosphate isomerase activity
GO:0004476
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
phosphomannomutation_pmm2 Pmm2
UniProtKB:Q9VTZ6
Gene
phosphomannomutase activity
GO:0004615
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
gdp_mannose_pyrophosphorylase_complex/gmppb Gmppb
UniProtKB:Q7JZB4
Complex Unit
mannose-1-phosphate guanylyltransferase (GTP) activity
GO:0004475
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.

Gene-review completeness (0/7 grounded genes reviewed)

0 complete review(s) · 0 with deep research · 7 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
Hex-C A1Z9Z2 ✗ — —
Pgi P52029 ✗ — —
Gmppb Q7JZB4 ✗ — —
Gmppa Q8SXU3 ✗ — —
Mpi Q9VH77 ✗ — —
Pmm2 Q9VTZ6 ✗ — —
Hex-A Q9W330 ✗ — —

Details

Context
Drosophila melanogasterNCBITaxon:7227
cytosolGO:0005829
GDP-mannose biosynthesisMetabolic Pathwaydmel_gdp_mannose_biosynthesis

Hexose phosphorylation and isomerization (Hex-A, Hex-C, Pgi, Mpi), Pmm2 and the Gmppa-Gmppb pyrophosphorylase convert hexoses to GDP-mannose.

GDP-mannose biosynthetic processGO:0009298
Context
Drosophila melanogasterNCBITaxon:7227
cytosolGO:0005829

Connections

Glucose 6-phosphate from hexokinase is isomerized by Pgi.
Fructose 6-phosphate is converted to mannose 6-phosphate by Mpi.
Mannose 6-phosphate made directly from mannose by hexokinase enters at Pmm2.
Mannose 6-phosphate is converted to mannose 1-phosphate by Pmm2.
Mannose 1-phosphate is condensed with GTP to GDP-mannose.
Part 1: glucose or mannose to hexose 6-phosphate
Hexose phosphorylationMetabolic Pathwayhexose_phosphorylation

Annotons

Hex-A Hexose phosphorylation
hexose_phosphorylation_hex_a
Participant: Gene Product: Hex-A
Gene Product:

Function

hexokinase activityGO:0004396
Hex-C Hexose phosphorylation
hexose_phosphorylation_hex_c
Participant: Gene Product: Hex-C
Gene Product:

Function

hexokinase activityGO:0004396
Part 2: glucose 6-phosphate to fructose 6-phosphate
Glucose 6-phosphate isomerizationMetabolic Pathwayglucose_phosphate_isomerization

Annotons

Pgi Glucose 6-phosphate isomerization
glucose_phosphate_isomerization_pgi
Participant: Gene Product: Pgi
Gene Product:

Function

glucose-6-phosphate isomerase activityGO:0004347
Part 3: fructose 6-phosphate to mannose 6-phosphate
Mannose 6-phosphate isomerizationMetabolic Pathwaymannose_phosphate_isomerization

Annotons

Mpi Mannose 6-phosphate isomerization
mannose_phosphate_isomerization_mpi
Participant: Gene Product: Mpi
Gene Product:

Function

mannose-6-phosphate isomerase activityGO:0004476
Part 4: mannose 6-phosphate to mannose 1-phosphate
PhosphomannomutationMetabolic Pathwayphosphomannomutation

Annotons

Pmm2 Phosphomannomutation
phosphomannomutation_pmm2
Participant: Gene Product: Pmm2
Gene Product:

Function

phosphomannomutase activityGO:0004615
Part 5: mannose 1-phosphate + GTP to GDP-mannose
GDP-mannose pyrophosphorylaseProtein Complexgdp_mannose_pyrophosphorylase

Gmppb is the catalytic subunit; Gmppa is a catalytically inactive regulatory subunit.

Annotons

GDP-mannose pyrophosphorylase
gdp_mannose_pyrophosphorylase_complex
Participant: Protein Complex: GDP-mannose pyrophosphorylase
Protein Complex:
GDP-mannose pyrophosphorylaseGO:0120508
Active units:
Gmppb
Participant: Gene Product: Gmppb
Gene Product:
Role: catalytic subunit
Function:
mannose-1-phosphate guanylyltransferase (GTP) activityGO:0004475
Gmppa
Participant: Gene Product: Gmppa
Gene Product:
Role: regulatory subunit