Hypoxia-inducible factor (Sima-Tgo) in Drosophila melanogaster

Hypoxia-inducible factor is a bHLH-PAS heterodimer that activates transcription when oxygen is low. The oxygen-regulated alpha subunit Sima (similar) is hydroxylated by the prolyl hydroxylase Fatiga in normoxia and degraded; in hypoxia it accumulates, enters the nucleus and dimerizes with the constitutive beta subunit Tango (tgo), the Drosophila ARNT homolog, to bind hypoxia response elements. Sima-Tgo drives hypoxia-induced gene expression, including tracheal branching responses, and Sima also has roles in growth control under normoxia.

MODULE:dmel_hif_complexDRAFTCONCRETEProtein Complexmodules/dmel_hif_complex.yaml
RNA polymerase II transcription regulator complexGO:0090575
FB:FBgg0000902
FlyBase gene group HIF: Hypoxia-inducible factor
FlyBase release FB2026_03 groups 2 D. melanogaster genes as hypoxia-inducible factor (HIF); this module models that group.
GO:0090575
RNA polymerase II transcription regulator complex
GO term grounding the module as RNA polymerase II transcription regulator complex.

GO has no specific cellular-component term for the HIF heterodimer, so the general RNA polymerase II transcription regulator complex term is used. Tgo is also the common partner of other bHLH-PAS proteins (for example single-minded, trachealess, spineless); only its HIF role is modelled here. The oxygen sensor Fatiga (Hph) and the VHL ubiquitin ligase are regulators and are not parts. FlyBase groups realized by this module: HIF (FBgg0000902). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_hif_complex.yaml. Member genes with a gene review in this repository: sima, tgo.

3Nodes
2Parts
0Variant Sets
0Variants
2Annotons
0Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_hif_complex deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

2 gene-function check(s) reflected in core functions · 0 conflict(s) · 0 evidence or coverage gap(s) (2 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
dmel_hif_complex_sima_sima sima
UniProtKB:Q24167
Gene
DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000981
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
dmel_hif_complex_tgo_tgo tgo
UniProtKB:O15945
Gene
DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000981
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).

Gene-review completeness (2/2 grounded genes reviewed)

1 complete review(s) · 2 with deep research · 0 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
sima Q24167 ✓ ✓ ✓
tgo O15945 ✓ 56/57 ✓

Details

Context
Drosophila melanogasterNCBITaxon:7227
nucleusGO:0005634
Hypoxia-inducible factorProtein Complexdmel_hif_complex

Sima-Tgo bHLH-PAS heterodimer that activates gene expression in hypoxia.

RNA polymerase II transcription regulator complexGO:0090575
Context
Drosophila melanogasterNCBITaxon:7227
nucleusGO:0005634
Part 1: oxygen-regulated alpha subunit
simaModuledmel_hif_complex_sima

Annotons

sima subunit
dmel_hif_complex_sima_sima
Participant: Gene Product: sima
Gene Product:

Function

DNA-binding transcription factor activity, RNA polymerase II-specificGO:0000981

oxygen-regulated alpha subunit

Part 2: constitutive beta subunit (ARNT)
tgoModuledmel_hif_complex_tgo

Annotons

tgo subunit
dmel_hif_complex_tgo_tgo
Participant: Gene Product: tgo
Gene Product:

Function

DNA-binding transcription factor activity, RNA polymerase II-specificGO:0000981

constitutive beta subunit (ARNT)