Hypusine biosynthesis in Drosophila melanogaster

Hypusine is a modified lysine found only in translation factor eIF5A, where it is needed for eIF5A to support translation elongation through difficult sequences such as polyproline stretches. It is made in two steps. Deoxyhypusine synthase (Dhps) transfers the aminobutyl group of spermidine to a specific lysine of eIF5A, forming deoxyhypusine. Deoxyhypusine hydroxylase, encoded in Drosophila by nero, then hydroxylates this residue to hypusine. In flies, nero mutations affect cell and organ growth and autophagy.

MODULE:dmel_hypusine_biosynthesisDRAFTCONCRETEMetabolic Pathwaymodules/dmel_hypusine_biosynthesis.yaml
peptidyl-hypusine biosynthetic processGO:0008612
FB:FBgg0002221
FlyBase gene group HYPUBIO: Hypusine biosynthesis
FlyBase release FB2026_03 groups 2 D. melanogaster genes as hypusine biosynthesis (HYPUBIO); this module models that group.
GO:0008612
peptidyl-hypusine biosynthetic process
GO term grounding the module as peptidyl-hypusine biosynthetic process.

Boundary. eIF5A is the substrate of both enzymes and is not modelled as a part; spermidine synthesis is upstream context. FlyBase groups realized by this module: HYPUBIO (FBgg0002221). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_hypusine_biosynthesis.yaml. Member genes with a gene review in this repository: Dhps, nero.

3Nodes
2Parts
0Variant Sets
0Variants
2Annotons
1Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_hypusine_biosynthesis deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Reaction chaining (advisory)

✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.

  • deoxyhypusine_synthesis → deoxyhypusine_hydroxylation [NOT_CHECKED]

Function consistency and core coverage

2 gene-function check(s) reflected in core functions · 0 conflict(s) · 0 evidence or coverage gap(s) (2 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
deoxyhypusine_synthesis_dhps Dhps
UniProtKB:Q9VSF4
Gene
deoxyhypusine synthase activity
GO:0034038
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
deoxyhypusine_hydroxylation_nero nero
UniProtKB:Q9V9U4
Gene
deoxyhypusine monooxygenase activity
GO:0019135
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).

Gene-review completeness (2/2 grounded genes reviewed)

2 complete review(s) · 2 with deep research · 0 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
Dhps Q9VSF4 ✓ ✓ ✓
nero Q9V9U4 ✓ ✓ ✓

Details

Context
Drosophila melanogasterNCBITaxon:7227
Hypusine biosynthesisMetabolic Pathwaydmel_hypusine_biosynthesis

Dhps and Nero modify a lysine of eIF5A to hypusine using spermidine.

peptidyl-hypusine biosynthetic processGO:0008612
Context
Drosophila melanogasterNCBITaxon:7227

Connections

Deoxyhypusyl-eIF5A made by Dhps is hydroxylated by Nero.
Part 1: spermidine-dependent eIF5A lysine aminobutylation
Deoxyhypusine synthesisMetabolic Pathwaydeoxyhypusine_synthesis

Annotons

Dhps Deoxyhypusine synthesis
deoxyhypusine_synthesis_dhps
Participant: Gene Product: Dhps
Gene Product:

Function

deoxyhypusine synthase activityGO:0034038
Part 2: deoxyhypusine to hypusine
Deoxyhypusine hydroxylationMetabolic Pathwaydeoxyhypusine_hydroxylation

Annotons

nero Deoxyhypusine hydroxylation
deoxyhypusine_hydroxylation_nero
Participant: Gene Product: nero
Gene Product:

Function

deoxyhypusine monooxygenase activityGO:0019135