L-methionine salvage pathway in Drosophila melanogaster

The methionine salvage pathway recycles the methylthio group of 5'-methylthioadenosine (MTA), a by-product of polyamine synthesis, back into methionine. MTA phosphorylase (Mtap) cleaves MTA to adenine and 5-methylthioribose-1-phosphate, which is isomerised to methylthioribulose-1-phosphate (Mri1) and dehydrated to a diketo phosphate (CG11134). The bifunctional enolase-phosphatase Enoph converts this to acireductone, which acireductone dioxygenase (Adi1) oxidises to 4-methylthio-2-oxobutanoate. A final transamination regenerates methionine. As in other animals, the pathway in flies lacks the methylthioribose kinase step used by bacteria and plants, because MTA is cleaved phosphorolytically.

MODULE:dmel_methionine_salvageDRAFTCONCRETEMetabolic Pathwaymodules/dmel_methionine_salvage.yaml
L-methionine salvageGO:0071267
FB:FBgg0002175
FlyBase gene group LMETSA: L-methionine salvage pathway
FlyBase release FB2026_03 groups 5 D. melanogaster genes as l-methionine salvage pathway (LMETSA); this module models that group.
GO:0071267
L-methionine salvage
GO term grounding the module as L-methionine salvage.

Boundary. The final transamination of 4-methylthio-2-oxobutanoate to methionine is carried out by broad-specificity aminotransferases that FlyBase does not include in this group, so it is not modelled. Adi1 is given the iron-dependent dioxygenase activity, which yields the methionine precursor; the nickel-dependent activity that yields methylthiopropionate is a side reaction. Molecular functions follow orthology to the characterized enzymes of other organisms; except for Mtap, the fly enzymes have not been assayed directly. FlyBase groups realized by this module: LMETSA (FBgg0002175). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_methionine_salvage.yaml. Member genes with a gene review in this repository: Adi1, CG11134, Enoph, Mri1, Mtap.

6Nodes
5Parts
0Variant Sets
0Variants
5Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_methionine_salvage deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Reaction chaining (advisory)

✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.

  • mta_phosphorolysis → mtr1p_isomerization [NOT_CHECKED]
  • mtr1p_isomerization → mtru1p_dehydration [NOT_CHECKED]
  • mtru1p_dehydration → enolase_phosphatase [NOT_CHECKED]
  • enolase_phosphatase → acireductone_dioxygenation [NOT_CHECKED]

Function consistency and core coverage

5 gene-function check(s) reflected in core functions · 0 conflict(s) · 0 evidence or coverage gap(s) (5 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
mta_phosphorolysis_mtap Mtap
UniProtKB:Q9V813
Gene
S-methyl-5-thioadenosine phosphorylase activity
GO:0017061
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
mtr1p_isomerization_mri1 Mri1
UniProtKB:Q9V9X4
Gene
S-methyl-5-thioribose-1-phosphate isomerase activity
GO:0046523
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
mtru1p_dehydration_cg11134 CG11134
UniProtKB:Q9VY93
Gene
methylthioribulose 1-phosphate dehydratase activity
GO:0046570
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
enolase_phosphatase_enoph Enoph
UniProtKB:Q9VN95
Gene
acireductone synthase activity
GO:0043874
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
acireductone_dioxygenation_adi1 Adi1
UniProtKB:Q6AWN0
Gene
acireductone dioxygenase [iron(II)-requiring] activity
GO:0010309
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).

Gene-review completeness (5/5 grounded genes reviewed)

5 complete review(s) · 5 with deep research · 0 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
Adi1 Q6AWN0 ✓ ✓ ✓
CG11134 Q9VY93 ✓ ✓ ✓
Enoph Q9VN95 ✓ ✓ ✓
Mri1 Q9V9X4 ✓ ✓ ✓
Mtap Q9V813 ✓ ✓ ✓

Details

Context
Drosophila melanogasterNCBITaxon:7227
Methionine salvage pathwayMetabolic Pathwaydmel_methionine_salvage

Five-enzyme pathway that converts 5'-methylthioadenosine back to the methionine precursor 4-methylthio-2-oxobutanoate.

L-methionine salvageGO:0071267
Context
Drosophila melanogasterNCBITaxon:7227

Connections

5-methylthioribose-1-phosphate is the substrate of the isomerase.
Methylthioribulose-1-phosphate is dehydrated.
The diketo phosphate is enolized and dephosphorylated to acireductone.
Acireductone is oxidised by Adi1.
Part 1: step 1, MTA to methylthioribose-1-phosphate
5'-methylthioadenosine phosphorolysisReactionmta_phosphorolysis

Annotons

Mtap 5'-methylthioadenosine phosphorolysis
mta_phosphorolysis_mtap
Participant: Gene Product: Mtap
Gene Product:

Function

S-methyl-5-thioadenosine phosphorylase activityGO:0017061
Part 2: step 2, isomerization to methylthioribulose-1-phosphate
Methylthioribose-1-phosphate isomerizationReactionmtr1p_isomerization

Annotons

Mri1 Methylthioribose-1-phosphate isomerization
mtr1p_isomerization_mri1
Participant: Gene Product: Mri1
Gene Product:

Function

S-methyl-5-thioribose-1-phosphate isomerase activityGO:0046523
Part 3: step 3, dehydration to the diketo phosphate
Methylthioribulose-1-phosphate dehydrationReactionmtru1p_dehydration

Annotons

CG11134 Methylthioribulose-1-phosphate dehydration
mtru1p_dehydration_cg11134
Participant: Gene Product: CG11134
Gene Product:

Function

methylthioribulose 1-phosphate dehydratase activityGO:0046570
Part 4: step 4, diketo phosphate to acireductone
Enolization and dephosphorylation to acireductoneReactionenolase_phosphatase

Annotons

Enoph Enolization and dephosphorylation to acireductone
enolase_phosphatase_enoph
Participant: Gene Product: Enoph
Gene Product:

Function

acireductone synthase activityGO:0043874
Part 5: step 5, acireductone to 4-methylthio-2-oxobutanoate
Acireductone dioxygenationReactionacireductone_dioxygenation

Annotons

Adi1 Acireductone dioxygenation
acireductone_dioxygenation_adi1
Participant: Gene Product: Adi1
Gene Product:

Function

acireductone dioxygenase [iron(II)-requiring] activityGO:0010309