Notch signaling pathway in Drosophila melanogaster

Notch signaling is a juxtacrine pathway in which the transmembrane ligands Delta and Serrate on one cell bind the Notch receptor on a neighbouring cell. Ligand binding, together with ligand endocytosis in the signal-sending cell, exposes Notch to cleavage by the ADAM10 metalloprotease Kuzbanian (S2 cleavage), after which the gamma-secretase complex (Presenilin, Nicastrin, Aph-1 and Pen-2) cleaves within the transmembrane domain (S3 cleavage) and releases the Notch intracellular domain. The intracellular domain enters the nucleus and forms a transcriptional activation complex with the CSL DNA-binding protein Suppressor of Hairless and the coactivator Mastermind, switching Su(H) target genes such as the Enhancer of split complex genes from repression to activation. The pathway controls lateral inhibition, boundary formation and binary cell-fate decisions throughout development.

MODULE:dmel_notch_signalingDRAFTCONCRETESignaling Pathwaymodules/dmel_notch_signaling.yaml
Notch signaling pathwayGO:0007219
FB:FBgg0001066
FlyBase gene group CNM: Csl-notch-mastermind transcription factor complex
FlyBase release FB2026_03 groups 3 D. melanogaster genes as csl-notch-mastermind transcription factor complex (CNM); this module models that group.
FB:FBgg0001068
FlyBase gene group NTCH: Notch signaling pathway
FlyBase release FB2026_03 groups 91 D. melanogaster genes as notch signaling pathway (NTCH); this module models that group.
GO:0007219
Notch signaling pathway
GO term grounding the module as Notch signaling pathway.

Boundary. The module contains ligands, receptor, the two proteolytic steps and the nuclear CSL complex. Notch appears twice, as the receptor and as the intracellular domain within the nuclear complex. E3 ligases that drive ligand endocytosis (Neuralized, Mind bomb 1), glycosyltransferases that modify Notch (Ofut1, Fringe, Rumi), the corepressor Hairless and the Enhancer of split target genes are FlyBase regulators and are not modelled as parts. Weary (wry) is included because FlyBase lists it among the core components, but its mechanism is not established. FlyBase groups realized by this module: CNM (FBgg0001066), NTCH (FBgg0001068). Subgroups folded into it: NTCH-C. FlyBase also curates regulator sets for this pathway, which are context and not modelled as parts: NTCH-N (negative regulators of notch signaling pathway, 37 genes); NTCH-P (positive regulators of notch signaling pathway, 48 genes). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_notch_signaling.yaml. Member genes with a gene review in this repository: aph-1, Delta, kuz, mam, N, Nct, pen-2, Psn, Ser, Su(H), Tace, wry.

7Nodes
6Parts
0Variant Sets
0Variants
8Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_notch_signaling deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

8 gene-function check(s) reflected in core functions · 0 conflict(s) · 0 evidence or coverage gap(s) (8 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
notch_ligands_delta Delta
UniProtKB:P10041
Gene
Notch binding
GO:0005112
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
notch_ligands_ser Ser
UniProtKB:P18168
Gene
Notch binding
GO:0005112
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
notch_receptor_n N
UniProtKB:P07207
Gene
transmembrane signaling receptor activity
GO:0004888
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
s2_cleavage_kuz kuz
UniProtKB:Q9VJW9
Gene
metalloendopeptidase activity
GO:0004222
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
s2_cleavage_tace Tace
UniProtKB:Q9VAC5
Gene
metalloendopeptidase activity
GO:0004222
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
gamma_secretase_complex/psn Psn
UniProtKB:O02194
Complex Unit
aspartic endopeptidase activity, intramembrane cleaving
GO:0042500
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
csl_nicd_mam_complex_complex/su_h Su(H)
UniProtKB:P28159
Complex Unit
DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000981
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
csl_nicd_mam_complex_complex/mam mam
UniProtKB:P21519
Complex Unit
transcription coactivator activity
GO:0003713
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).

Gene-review completeness (12/12 grounded genes reviewed)

12 complete review(s) · 12 with deep research · 0 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
aph-1 Q9VQG2 ✓ ✓ ✓
Dl P10041 ✓ ✓ ✓
kuz Q9VJW9 ✓ ✓ ✓
mam P21519 ✓ ✓ ✓
N P07207 ✓ ✓ ✓
Nct Q9VC27 ✓ ✓ ✓
pen-2 Q86BE9 ✓ ✓ ✓
Psn O02194 ✓ ✓ ✓
Ser P18168 ✓ ✓ ✓
Su(H) P28159 ✓ ✓ ✓
Tace Q9VAC5 ✓ ✓ ✓
wry Q7KU08 ✓ ✓ ✓

Details

Context
Drosophila melanogasterNCBITaxon:7227
Notch signaling pathwaySignaling Pathwaydmel_notch_signaling

Juxtacrine pathway in which Delta/Serrate binding triggers sequential cleavage of Notch and activation of Su(H)-Mastermind target genes by the Notch intracellular domain.

Notch signaling pathwayGO:0007219
Context
Drosophila melanogasterNCBITaxon:7227

Connections

notch_ligands -> notch_receptor Positively Regulates
DSL ligands bind and activate Notch on the adjacent cell.
notch_receptor -> s2_cleavage Provides Input For
Ligand-bound Notch is the substrate for ADAM S2 cleavage.
s2_cleavage -> gamma_secretase Provides Input For
The S2-cleaved membrane-tethered fragment is the substrate for gamma-secretase.
gamma_secretase -> csl_nicd_mam_complex Positively Regulates
S3 cleavage releases the Notch intracellular domain that assembles the nuclear complex.
Part 1: transmembrane ligands
DSL ligands Delta and SerrateSignaling Pathwaynotch_ligands

Transmembrane DSL-domain ligands presented by the signal-sending cell.

Annotons

Delta DSL ligands Delta and Serrate
notch_ligands_delta
Participant: Gene Product: Delta
Gene Product:

Function

Notch bindingGO:0005112
Ser DSL ligands Delta and Serrate
notch_ligands_ser
Participant: Gene Product: Ser
Gene Product:

Function

Notch bindingGO:0005112
Part 2: FlyBase core component of uncharacterized mechanism
WearySignaling Pathwayweary

Single-pass membrane protein with EGF-like repeats that FlyBase lists among the core components of Notch signaling; how it acts in the pathway is not well characterized.

Annotons

wry Weary
weary_wry
Participant: Gene Product: wry
Gene Product:
Part 3: receptor
Notch receptorSignaling Pathwaynotch_receptor

Annotons

N Notch receptor
notch_receptor_n
Participant: Gene Product: N
Gene Product:

Function

transmembrane signaling receptor activityGO:0004888
Part 4: S2 cleavage of ligand-bound Notch
ADAM metalloproteases for S2 cleavageSignaling Pathways2_cleavage

Kuzbanian (ADAM10) performs the ligand-dependent S2 cleavage of Notch; the ADAM17 homolog Tace also cleaves Notch, mainly in ligand-independent contexts.

Annotons

kuz ADAM metalloproteases for S2 cleavage
s2_cleavage_kuz
Participant: Gene Product: kuz
Gene Product:

Function

metalloendopeptidase activityGO:0004222

Processes

Notch receptor processingGO:0007220
Tace ADAM metalloproteases for S2 cleavage
s2_cleavage_tace
Participant: Gene Product: Tace
Gene Product:

Function

metalloendopeptidase activityGO:0004222

Processes

Notch receptor processingGO:0007220
Part 5: S3 intramembrane cleavage releasing the Notch intracellular domain
Gamma-secretase complexSignaling Pathwaygamma_secretase

Annotons

Gamma-secretase complex
gamma_secretase_complex
Participant: Protein Complex: Gamma-secretase complex
Protein Complex:
Gamma-secretase complexGO:0070765
Active units:
Psn
Participant: Gene Product: Psn
Gene Product:
Role: catalytic subunit
Function:
aspartic endopeptidase activity, intramembrane cleavingGO:0042500
Nct
Participant: Gene Product: Nct
Gene Product:
aph-1
Participant: Gene Product: aph-1
Gene Product:
pen-2
Participant: Gene Product: pen-2
Gene Product:

Processes

Notch receptor processingGO:0007220
Part 6: nuclear transcriptional activation complex
CSL-Notch-Mastermind transcription complexSignaling Pathwaycsl_nicd_mam_complex

The Notch intracellular domain, the CSL DNA-binding protein Suppressor of Hairless and the coactivator Mastermind form the activation complex on Su(H) binding sites of target genes.

Annotons

CSL-Notch-Mastermind transcription complex
csl_nicd_mam_complex_complex
Participant: Protein Complex: CSL-Notch-Mastermind transcription complex
Protein Complex:
CSL-Notch-Mastermind transcription complexGO:0002193
Active units:
N
Participant: Gene Product: N
Gene Product:
Role: Notch intracellular domain
Su(H)
Participant: Gene Product: Su(H)
Gene Product:
Role: CSL DNA-binding protein
Function:
DNA-binding transcription factor activity, RNA polymerase II-specificGO:0000981
mam
Participant: Gene Product: mam
Gene Product:
Role: coactivator
Function:
transcription coactivator activityGO:0003713