Nuclear DNA-directed RNA polymerases I, II and III in Drosophila melanogaster

Eukaryotic nuclei contain three multisubunit DNA-directed RNA polymerases. RNA polymerase I transcribes the large ribosomal RNA precursor in the nucleolus, RNA polymerase II transcribes mRNAs and most snRNAs and microRNA precursors, and RNA polymerase III transcribes tRNAs, 5S rRNA, U6 snRNA and other short structured RNAs. Each enzyme has two large catalytic subunits that form the active site, a set of subunits shared by all three enzymes (RPABC1, RPABC2, RPABC3, RPABC4 and RPABC5), subunits shared by Pol I and Pol III (RPAC1 and RPAC2), and enzyme-specific subunits.

MODULE:dmel_nuclear_rna_polymerasesDRAFTCONCRETEProtein Complexmodules/dmel_nuclear_rna_polymerases.yaml
nuclear DNA-directed RNA polymerase complexGO:0055029
FB:FBgg0001646
FlyBase gene group RNAP: Nuclear rna polymerase complexes
FlyBase release FB2026_03 groups 31 D. melanogaster genes as nuclear rna polymerase complexes (RNAP); this module models that group.
GO:0055029
nuclear DNA-directed RNA polymerase complex
GO term grounding the module as nuclear DNA-directed RNA polymerase complex.

Boundary. The common subunits (Polr2E, Polr2F, Polr2H, Polr2K, Polr2L) and the Pol I/III subunits (Polr1C, Polr1D) appear in each enzyme they belong to, following the FlyBase subgroups. Polr2M (Gdown1 homolog) is listed by FlyBase in RNA polymerase II but is an associated factor rather than one of the twelve core subunits. Mitochondrial RNA polymerase and the general transcription factors are outside the module. FlyBase groups realized by this module: RNAP (FBgg0001646). Subgroups folded into it: RNAPII, RNAPI, RNAPIII. Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_nuclear_rna_polymerases.yaml. None of the member genes has a gene review in this repository yet.

4Nodes
3Parts
0Variant Sets
0Variants
3Annotons
0Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_nuclear_rna_polymerases deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

0 gene-function check(s) reflected in core functions · 0 conflict(s) · 0 evidence or coverage gap(s) (3 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
rna_polymerase_i_complex PROTEIN_COMPLEX
Gene
DNA-directed RNA polymerase activity
GO:0003899
Participant Unchecked
No direct UniProt participant to compare. Abstract selectors and complex-wide activities cannot be inferred from donor or subunit gene reviews.
rna_polymerase_ii_complex PROTEIN_COMPLEX
Gene
DNA-directed RNA polymerase activity
GO:0003899
Participant Unchecked
No direct UniProt participant to compare. Abstract selectors and complex-wide activities cannot be inferred from donor or subunit gene reviews.
rna_polymerase_iii_complex PROTEIN_COMPLEX
Gene
DNA-directed RNA polymerase activity
GO:0003899
Participant Unchecked
No direct UniProt participant to compare. Abstract selectors and complex-wide activities cannot be inferred from donor or subunit gene reviews.

Gene-review completeness (0/31 grounded genes reviewed)

0 complete review(s) · 0 with deep research · 31 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
Polr2E A0A0B4KFB2 ✗ — —
Polr3K A1ZBX4 ✗ — —
Polr2K A8DYE1 ✗ — —
Polr3A A8JUY3 ✗ — —
Polr2C O97183 ✗ — —
Polr2A P04052 ✗ — —
Polr2B P08266 ✗ — —
Polr1B P20028 ✗ — —
Polr3B P25167 ✗ — —
Polr2I P36958 ✗ — —
Polr1A P91875 ✗ — —
Polr2F Q24320 ✗ — —
Polr3D Q7KUR9 ✗ — —
Polr3G Q86BI8 ✗ — —
Polr1G Q9V493 ✗ — —
Polr2L Q9VC49 ✗ — —
Polr3F Q9VD25 ✗ — —
Polr1H Q9VD81 ✗ — —
Polr2M Q9VDY6 ✗ — —
Polr1E Q9VE94 ✗ — —
Polr2D Q9VEA5 ✗ — —
Polr2G Q9VFB5 ✗ — —
Polr3C Q9VG60 ✗ — —
Polr1D Q9VIZ0 ✗ — —
Polr2J Q9VJE4 ✗ — —
Polr1F Q9VM72 ✗ — —
Polr1C Q9VMX3 ✗ — —
Polr2H Q9VNZ3 ✗ — —
Polr3E Q9VP85 ✗ — —
Polr3H Q9VTL6 ✗ — —
Polr3I Q9VX99 ✗ — —

Details

Context
Drosophila melanogasterNCBITaxon:7227
nucleusGO:0005634
Nuclear RNA polymerasesProtein Complexdmel_nuclear_rna_polymerases

RNA polymerases I, II and III, which share five common subunits and transcribe rRNA, mRNA and short structured RNAs respectively.

nuclear DNA-directed RNA polymerase complexGO:0055029
Context
Drosophila melanogasterNCBITaxon:7227
nucleusGO:0005634
Part 1: rRNA transcription
RNA polymerase IProtein Complexrna_polymerase_i

Annotons

RNA polymerase I
rna_polymerase_i_complex
Participant: Protein Complex: RNA polymerase I
Protein Complex:
RNA polymerase IGO:0005736
Active units:
Polr1A
Participant: Gene Product: Polr1A
Gene Product:
Polr1B
Participant: Gene Product: Polr1B
Gene Product:
Polr1C
Participant: Gene Product: Polr1C
Gene Product:
Polr1D
Participant: Gene Product: Polr1D
Gene Product:
Polr1E
Participant: Gene Product: Polr1E
Gene Product:
Polr1F
Participant: Gene Product: Polr1F
Gene Product:
Polr1G
Participant: Gene Product: Polr1G
Gene Product:
Polr1H
Participant: Gene Product: Polr1H
Gene Product:
Polr2E
Participant: Gene Product: Polr2E
Gene Product:
Polr2F
Participant: Gene Product: Polr2F
Gene Product:
Polr2H
Participant: Gene Product: Polr2H
Gene Product:
Polr2K
Participant: Gene Product: Polr2K
Gene Product:
Polr2L
Participant: Gene Product: Polr2L
Gene Product:

Function

DNA-directed RNA polymerase activityGO:0003899

Processes

transcription by RNA polymerase IGO:0006360
Part 2: mRNA and snRNA transcription
RNA polymerase IIProtein Complexrna_polymerase_ii

Annotons

RNA polymerase II
rna_polymerase_ii_complex
Participant: Protein Complex: RNA polymerase II
Protein Complex:
RNA polymerase IIGO:0005665
Active units:
Polr2A
Participant: Gene Product: Polr2A
Gene Product:
Polr2B
Participant: Gene Product: Polr2B
Gene Product:
Polr2C
Participant: Gene Product: Polr2C
Gene Product:
Polr2D
Participant: Gene Product: Polr2D
Gene Product:
Polr2E
Participant: Gene Product: Polr2E
Gene Product:
Polr2F
Participant: Gene Product: Polr2F
Gene Product:
Polr2G
Participant: Gene Product: Polr2G
Gene Product:
Polr2H
Participant: Gene Product: Polr2H
Gene Product:
Polr2I
Participant: Gene Product: Polr2I
Gene Product:
Polr2J
Participant: Gene Product: Polr2J
Gene Product:
Polr2K
Participant: Gene Product: Polr2K
Gene Product:
Polr2L
Participant: Gene Product: Polr2L
Gene Product:
Polr2M
Participant: Gene Product: Polr2M
Gene Product:

Function

DNA-directed RNA polymerase activityGO:0003899

Processes

transcription by RNA polymerase IIGO:0006366
Part 3: tRNA, 5S rRNA and short RNA transcription
RNA polymerase IIIProtein Complexrna_polymerase_iii

Annotons

RNA polymerase III
rna_polymerase_iii_complex
Participant: Protein Complex: RNA polymerase III
Protein Complex:
RNA polymerase IIIGO:0005666
Active units:
Polr1C
Participant: Gene Product: Polr1C
Gene Product:
Polr1D
Participant: Gene Product: Polr1D
Gene Product:
Polr2E
Participant: Gene Product: Polr2E
Gene Product:
Polr2F
Participant: Gene Product: Polr2F
Gene Product:
Polr2H
Participant: Gene Product: Polr2H
Gene Product:
Polr2K
Participant: Gene Product: Polr2K
Gene Product:
Polr2L
Participant: Gene Product: Polr2L
Gene Product:
Polr3A
Participant: Gene Product: Polr3A
Gene Product:
Polr3B
Participant: Gene Product: Polr3B
Gene Product:
Polr3C
Participant: Gene Product: Polr3C
Gene Product:
Polr3D
Participant: Gene Product: Polr3D
Gene Product:
Polr3E
Participant: Gene Product: Polr3E
Gene Product:
Polr3F
Participant: Gene Product: Polr3F
Gene Product:
Polr3G
Participant: Gene Product: Polr3G
Gene Product:
Polr3H
Participant: Gene Product: Polr3H
Gene Product:
Polr3I
Participant: Gene Product: Polr3I
Gene Product:
Polr3K
Participant: Gene Product: Polr3K
Gene Product:

Function

DNA-directed RNA polymerase activityGO:0003899

Processes

transcription by RNA polymerase IIIGO:0006383