Replication origin licensing and activation in Drosophila melanogaster

Eukaryotic DNA replication starts in two steps that are separated in the cell cycle. In G1, the origin recognition complex (ORC) binds replication origins and, with Cdc6 and Cdt1 (Double parked in Drosophila), loads the MCM2-7 helicase core as an inactive double hexamer around double-stranded DNA; this is origin licensing. In S phase, the Dbf4-dependent kinase (Cdc7 with its regulatory subunit Chiffon) and cyclin-dependent kinases trigger the recruitment of Cdc45 and the four-subunit GINS complex onto MCM2-7, forming the active CMG (Cdc45-MCM-GINS) helicase that unwinds DNA at the replication fork. Restricting licensing to G1 and activation to S phase ensures that each origin fires only once per cell cycle.

MODULE:dmel_replication_origin_licensing_activationDRAFTCONCRETEBiological Processmodules/dmel_replication_origin_licensing_activation.yaml
DNA replication initiationGO:0006270
FB:FBgg0000510
FlyBase gene group ORC: Origin recognition complex
FlyBase release FB2026_03 groups 6 D. melanogaster genes as origin recognition complex (ORC); this module models that group.
FB:FBgg0001612
FlyBase gene group CMG: Cmg complex
FlyBase release FB2026_03 groups 11 D. melanogaster genes as cmg complex (CMG); this module models that group.
FB:FBgg0001613
FlyBase gene group GINS: Gins complex
FlyBase release FB2026_03 groups 4 D. melanogaster genes as gins complex (GINS); this module models that group.
FB:FBgg0001614
FlyBase gene group MCM2-7: Mcm2-7 complex
FlyBase release FB2026_03 groups 6 D. melanogaster genes as mcm2-7 complex (MCM2-7); this module models that group.
FB:FBgg0002115
FlyBase gene group DDK: Dbf4-dependent cdc7 kinase complex
FlyBase release FB2026_03 groups 2 D. melanogaster genes as dbf4-dependent cdc7 kinase complex (DDK); this module models that group.
GO:0006270
DNA replication initiation
GO term grounding the module as DNA replication initiation.

Boundary. The module covers origin recognition, MCM2-7 loading and helicase activation. The FlyBase groups CMG, GINS and MCM2-7 overlap; MCM2-7 subunits appear both in the loaded MCM2-7 part and in the CMG part, and GINS is represented inside the CMG part rather than as a separate part. Cdc6 and dup (Cdt1) are not FlyBase members of these groups and were added as textbook licensing factors. Other firing factors (for example Mcm10, Treslin/Sld3 and TopBP1/Dpb11 homologs) and the replicative polymerases (see dmel_dna_polymerase_complexes) are outside the module. FlyBase groups realized by this module: ORC (FBgg0000510), CMG (FBgg0001612), GINS (FBgg0001613), MCM2-7 (FBgg0001614), DDK (FBgg0002115). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_replication_origin_licensing_activation.yaml. None of the member genes has a gene review in this repository yet.

6Nodes
5Parts
0Variant Sets
0Variants
6Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_replication_origin_licensing_activation deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Reaction chaining (advisory)

✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.

  • orc → mcm2_7 [NOT_CHECKED]
  • mcm2_7 → cmg [NOT_CHECKED]

Function consistency and core coverage

0 gene-function check(s) reflected in core functions · 0 conflict(s) · 1 evidence or coverage gap(s) (2 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
ddk_complex/cdc7 Cdc7
UniProtKB:Q9W3Y1
Complex Unit
protein serine/threonine kinase activity
GO:0004674
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
cmg_complex PROTEIN_COMPLEX
Gene
DNA helicase activity
GO:0003678
Participant Unchecked
No direct UniProt participant to compare. Abstract selectors and complex-wide activities cannot be inferred from donor or subunit gene reviews.

Gene-review completeness (0/21 grounded genes reviewed)

0 complete review(s) · 0 with deep research · 21 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
dup A0A0B4LGJ6 ✗ — —
Orc3 A1Z996 ✗ — —
Orc1 O16810 ✗ — —
Cdc45 O96989 ✗ — —
Mcm2 P49735 ✗ — —
Orc2 Q24168 ✗ — —
Orc5 Q24169 ✗ — —
dpa Q26454 ✗ — —
chif Q9NK54 ✗ — —
Mcm6 Q9V461 ✗ — —
Sld5 Q9VBI1 ✗ — —
Mcm5 Q9VGW6 ✗ — —
Psf2 Q9VQY9 ✗ — —
Cdc6 Q9VSM9 ✗ — —
Psf1 Q9W0I7 ✗ — —
Orc4 Q9W102 ✗ — —
Psf3 Q9W2V7 ✗ — —
Cdc7 Q9W3Y1 ✗ — —
Mcm7 Q9XYU0 ✗ — —
Mcm3 Q9XYU1 ✗ — —
Orc6 Q9Y1B2 ✗ — —

Details

Context
Drosophila melanogasterNCBITaxon:7227
nucleusGO:0005634
Origin licensing and activationBiological Processdmel_replication_origin_licensing_activation

ORC-dependent loading of the MCM2-7 helicase onto origins and its DDK-triggered conversion into the active CMG helicase.

DNA replication initiationGO:0006270
Context
Drosophila melanogasterNCBITaxon:7227
nucleusGO:0005634

Connections

orc -> mcm2_7 Precedes
ORC bound at origins recruits and loads MCM2-7.
mcm_loading_factors -> mcm2_7 Positively Regulates
Cdc6 and Cdt1 are required for MCM2-7 loading.
mcm2_7 -> cmg Precedes
Loaded MCM2-7 double hexamers are converted into CMG helicases in S phase.
ddk -> cmg Positively Regulates
DDK phosphorylation of MCM2-7 promotes Cdc45 and GINS recruitment.
Part 1: origin recognition
Origin recognition complexBiological Processorc

Six-subunit complex that binds replication origins and recruits the licensing machinery.

Annotons

Origin recognition complex
orc_complex
Participant: Protein Complex: Origin recognition complex
Protein Complex:
Origin recognition complexGO:0000808
Active units:
Orc1
Participant: Gene Product: Orc1
Gene Product:
Orc2
Participant: Gene Product: Orc2
Gene Product:
Orc3
Participant: Gene Product: Orc3
Gene Product:
Orc4
Participant: Gene Product: Orc4
Gene Product:
Orc5
Participant: Gene Product: Orc5
Gene Product:
Orc6
Participant: Gene Product: Orc6
Gene Product:

Processes

pre-replicative complex assemblyGO:0036388
Part 2: helicase loading
MCM2-7 loading factors Cdc6 and Cdt1Biological Processmcm_loading_factors

Cdc6 and Cdt1 (Double parked) cooperate with ORC to load MCM2-7 onto origin DNA. They are not members of the FlyBase groups and are added as textbook licensing factors.

Annotons

Cdc6 MCM2-7 loading factors Cdc6 and Cdt1
mcm_loading_factors_cdc6
Participant: Gene Product: Cdc6
Gene Product:

Processes

pre-replicative complex assemblyGO:0036388
dup MCM2-7 loading factors Cdc6 and Cdt1
mcm_loading_factors_dup
Participant: Gene Product: dup
Gene Product:

Processes

pre-replicative complex assemblyGO:0036388
Part 3: licensed helicase core
MCM2-7 helicase coreBiological Processmcm2_7

Heterohexameric AAA+ helicase motor (Mcm2, Mcm3, Mcm4/Dpa, Mcm5, Mcm6, Mcm7) loaded as an inactive double hexamer at licensed origins.

Annotons

MCM2-7 helicase core
mcm2_7_complex
Participant: Protein Complex: MCM2-7 helicase core
Protein Complex:
MCM2-7 helicase coreGO:0042555
Active units:
Mcm2
Participant: Gene Product: Mcm2
Gene Product:
Mcm3
Participant: Gene Product: Mcm3
Gene Product:
Mcm5
Participant: Gene Product: Mcm5
Gene Product:
Mcm6
Participant: Gene Product: Mcm6
Gene Product:
Mcm7
Participant: Gene Product: Mcm7
Gene Product:
dpa
Participant: Gene Product: dpa
Gene Product:
Part 4: helicase activation kinase
Dbf4-dependent kinaseBiological Processddk

Cdc7 kinase with its Dbf4-family regulatory subunit Chiffon; DDK phosphorylates loaded MCM2-7 to promote CMG assembly.

Annotons

Dbf4-dependent kinase
ddk_complex
Participant: Protein Complex: Dbf4-dependent kinase
Protein Complex:
Dbf4-dependent kinaseGO:0031431
Active units:
Cdc7
Participant: Gene Product: Cdc7
Gene Product:
Function:
protein serine/threonine kinase activityGO:0004674
chif
Participant: Gene Product: chif
Gene Product:
Part 5: active replicative helicase
CMG helicaseBiological Processcmg

Active helicase formed when Cdc45 and GINS (Psf1, Psf2, Psf3, Sld5) join MCM2-7. GINS is a stable four-subunit subcomplex of CMG.

Annotons

CMG helicase
cmg_complex
Participant: Protein Complex: CMG helicase
Protein Complex:
CMG helicaseGO:0071162
Active units:
Cdc45
Participant: Gene Product: Cdc45
Gene Product:
Mcm2
Participant: Gene Product: Mcm2
Gene Product:
Mcm3
Participant: Gene Product: Mcm3
Gene Product:
Mcm5
Participant: Gene Product: Mcm5
Gene Product:
Mcm6
Participant: Gene Product: Mcm6
Gene Product:
Mcm7
Participant: Gene Product: Mcm7
Gene Product:
Psf1
Participant: Gene Product: Psf1
Gene Product:
Psf2
Participant: Gene Product: Psf2
Gene Product:
Psf3
Participant: Gene Product: Psf3
Gene Product:
Sld5
Participant: Gene Product: Sld5
Gene Product:
dpa
Participant: Gene Product: dpa
Gene Product:

Function

DNA helicase activityGO:0003678

Processes

DNA replication initiationGO:0006270