Survival motor neuron (SMN) complex in Drosophila melanogaster

The survival motor neuron (SMN) complex assembles the heptameric Sm protein ring onto the Sm site of spliceosomal snRNAs in the cytoplasm, the key step of Sm-class snRNP biogenesis. SMN oligomerizes and binds Gemin2, which holds a pentamer of Sm proteins; Gemin5 recognizes the snRNA, and Gemin3 is a DEAD-box helicase subunit. Drosophila has a reduced set of Gemin proteins compared with vertebrates and carries three Gemin4 paralogs (Glos/Gemin4a, Gem4b, Gem4c); FlyBase defines SMN complex variants that differ in which Gemin4 paralog they contain. Loss of Smn in flies causes defects in snRNP assembly, motor function and viability, modelling spinal muscular atrophy.

MODULE:dmel_smn_complexDRAFTCONCRETEProtein Complexmodules/dmel_smn_complex.yaml
SMN complexGO:0032797
FB:FBgg0000470
FlyBase gene group GEM: Gemins
FlyBase release FB2026_03 groups 6 D. melanogaster genes as gemins (GEM); this module models that group.
FB:FBgg0001830
FlyBase gene group SMN-CPX: Survival motor neuron complex variants
FlyBase release FB2026_03 groups 6 D. melanogaster genes as survival motor neuron complex variants (SMN-CPX); this module models that group.
GO:0032797
SMN complex
GO term grounding the module as SMN complex.

FlyBase groups the Gemins (GEM) and three SMN complex variants (SMN-C with Gem4a/Glos, SMN-C-4B with Gem4b, SMN-C-4C). The FlyBase SMN-C-4C group lists only Smn, Gem2, Gem3 and rig and omits Gem4c itself; Gem4c is assigned to the Gemin4c variant here on the basis of the group name and its GEM membership. Whether one complex holds exactly one Gemin4 paralog is inferred from the FlyBase variant definitions. Sm proteins, the substrate of the complex, are in dmel_spliceosome. No molecular function is assigned: the SMN complex assembles Sm rings onto snRNAs, which is captured as a process, and the RNA helicase activity inferred for Gem3 (IBA) is not established for the fly protein. FlyBase groups realized by this module: GEM (FBgg0000470), SMN-CPX (FBgg0001830). Subgroups folded into it: SMN-C, SMN-C-4B, SMN-C-4C. Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_smn_complex.yaml. None of the member genes has a gene review in this repository yet.

6Nodes
2Parts
1Variant Sets
3Variants
4Annotons
0Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_smn_complex deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

No functional claims were checked. This does not establish consistency with gene or family reviews.

Gene-review completeness (2/7 grounded genes reviewed)

2 complete review(s) · 2 with deep research · 5 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
Gem4c Q8IRS9 ✗ — —
Gem4b Q8IRT0 ✗ — —
Gem3 Q9V3C4 ✗ — —
Gem2 Q9VVX0 ✗ — —
Glos Q9W4N9 ✗ — —
rig Q86BY9 ✓ ✓ ✓
Smn Q9VV74 ✓ ✓ ✓

Details

Context
Drosophila melanogasterNCBITaxon:7227
SMN complexProtein Complexdmel_smn_complex

SMN-Gemin complex that loads Sm rings onto snRNAs during snRNP assembly, with alternative Gemin4 paralogs.

SMN complexGO:0032797
Context
Drosophila melanogasterNCBITaxon:7227
Part 1: Sm ring loading onto snRNA
SMN core subunitsProtein Complexsmn_core

SMN, Gemin2, the helicase Gemin3 and the snRNA-binding Gemin5 (rig).

Annotons

SMN core subunits
smn_core_complex
Participant: Protein Complex: SMN core subunits
Protein Complex:
SMN core subunitsGO:0032797
Active units:
Smn
Participant: Gene Product: Smn
Gene Product:
Gem2
Participant: Gene Product: Gem2
Gene Product:
Gem3
Participant: Gene Product: Gem3
Gene Product:
rig
Participant: Gene Product: rig
Gene Product:

Processes

spliceosomal snRNP assemblyGO:0000387
Part 2: variable Gemin4 subunit
Gemin4 paralog subunitProtein Complexgemin4_paralogs
Variant set: Gemin4a, Gemin4b or Gemin4c (Exactly One)
Gemin4a (Glos) SMN complex variantProtein Complexgemin4a_variant

Annotons

Glos Gemin4a (Glos) SMN complex variant
gemin4a_variant_glos
Participant: Gene Product: Glos
Gene Product:
Gemin4b SMN complex variantProtein Complexgemin4b_variant

Annotons

Gem4b Gemin4b SMN complex variant
gemin4b_variant_gem4b
Participant: Gene Product: Gem4b
Gene Product:
Gemin4c SMN complex variantProtein Complexgemin4c_variant

Annotons

Gem4c Gemin4c SMN complex variant
gemin4c_variant_gem4c
Participant: Gene Product: Gem4c
Gene Product: