Mitochondrial sulfide oxidation in Drosophila melanogaster

Hydrogen sulfide produced by cysteine catabolism and gut microbes is detoxified in the mitochondrial matrix. Sulfide:quinone oxidoreductase (Sqor) oxidises sulfide to a protein-bound persulfide, passing the electrons to ubiquinone in the respiratory chain. The persulfide sulfur is then oxidised to sulfite by the persulfide dioxygenase ETHE1 (CG30022 in flies) or transferred to sulfite to form thiosulfate. Sulfite oxidase (shop) oxidises sulfite to sulfate, and the mitochondrial dicarboxylate carrier (Dic1) can export thiosulfate and sulfate in exchange for other anions.

MODULE:dmel_sulfide_oxidationDRAFTCONCRETEMetabolic Pathwaymodules/dmel_sulfide_oxidation.yaml
sulfide oxidationGO:0019418
FB:FBgg0002230
FlyBase gene group SULOXID: Sulfide oxidation
FlyBase release FB2026_03 groups 4 D. melanogaster genes as sulfide oxidation (SULOXID); this module models that group.
GO:0019418
sulfide oxidation
GO term grounding the module as sulfide oxidation.

Boundary. The sulfurtransferase (rhodanese) step that makes thiosulfate is not in the FlyBase group and is not modelled. CG30022 is the fly ortholog of ETHE1 (UniProt names it persulfide dioxygenase ETHE1); its activity and those of Sqor follow orthology and have not been assayed in flies. Dic1 transport of thiosulfate, sulfate and dicarboxylates has been shown in reconstituted proteoliposomes; Dic1 also transports malate, succinate and phosphate, so its role here is one of several. Sulfite oxidase also handles sulfite from cysteine catabolism. FlyBase groups realized by this module: SULOXID (FBgg0002230). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_sulfide_oxidation.yaml. Member genes with a gene review in this repository: CG30022, Dic1, shop, Sqor.

5Nodes
4Parts
0Variant Sets
0Variants
4Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_sulfide_oxidation deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Reaction chaining (advisory)

✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.

  • sulfide_quinone_oxidation → persulfide_dioxygenation [NOT_CHECKED]
  • persulfide_dioxygenation → sulfite_oxidation [NOT_CHECKED]

Function consistency and core coverage

3 gene-function check(s) reflected in core functions · 0 conflict(s) · 1 evidence or coverage gap(s) (4 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
sulfide_quinone_oxidation_sqor Sqor
UniProtKB:Q9VZF6
Gene
sulfide:quinone oxidoreductase activity
GO:0070224
Review Disagreement
The review removes, modifies, or marks this term over-annotated and provides no retained/core support. Review the rationale; rejection of an evidence row alone is not a biological NOT.
persulfide_dioxygenation_cg30022 CG30022
UniProtKB:A0ACM8PZC4
Gene
sulfur dioxygenase activity
GO:0050313
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
sulfite_oxidation_shop shop
UniProtKB:Q9VWP4
Gene
sulfite oxidase activity
GO:0008482
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
anion_export_dic1 Dic1
UniProtKB:Q9Y166
Gene
thiosulfate transmembrane transporter activity
GO:0015117
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).

Gene-review completeness (4/4 grounded genes reviewed)

4 complete review(s) · 4 with deep research · 0 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
CG30022 A0ACM8PZC4 ✓ ✓ ✓
Dic1 Q9Y166 ✓ ✓ ✓
shop Q9VWP4 ✓ ✓ ✓
Sqor Q9VZF6 ✓ ✓ ✓

Details

Context
Drosophila melanogasterNCBITaxon:7227
mitochondrial matrixGO:0005759
Sulfide oxidationMetabolic Pathwaydmel_sulfide_oxidation

Mitochondrial oxidation of hydrogen sulfide through persulfide and sulfite to thiosulfate and sulfate.

sulfide oxidationGO:0019418
Context
Drosophila melanogasterNCBITaxon:7227
mitochondrial matrixGO:0005759

Connections

The persulfide made by Sqor is oxidised by ETHE1.
Sulfite is oxidised to sulfate by sulfite oxidase.
sulfite_oxidation -> anion_export Provides Input For
Sulfate and thiosulfate leave the matrix through the dicarboxylate carrier.
Part 1: step 1, sulfide to persulfide with electron transfer to ubiquinone
Sulfide:quinone oxidoreductionReactionsulfide_quinone_oxidation

Annotons

Sqor Sulfide:quinone oxidoreduction
sulfide_quinone_oxidation_sqor
Participant: Gene Product: Sqor
Gene Product:

Function

sulfide:quinone oxidoreductase activityGO:0070224
Part 2: step 2, persulfide sulfur to sulfite
Persulfide dioxygenationReactionpersulfide_dioxygenation

Annotons

CG30022 Persulfide dioxygenation
persulfide_dioxygenation_cg30022
Participant: Gene Product: CG30022
Gene Product:

Function

sulfur dioxygenase activityGO:0050313
Part 3: step 3, sulfite to sulfate
Sulfite oxidationReactionsulfite_oxidation

Annotons

shop Sulfite oxidation
sulfite_oxidation_shop
Participant: Gene Product: shop
Gene Product:

Function

sulfite oxidase activityGO:0008482
Part 4: export of oxidised sulfur anions from the matrix
Thiosulfate and sulfate exportTransport Stepanion_export

Annotons

Dic1 Thiosulfate and sulfate export
anion_export_dic1
Participant: Gene Product: Dic1
Gene Product:

Function

thiosulfate transmembrane transporter activityGO:0015117