Tdrd3-Top3beta topoisomerase complex in Drosophila melanogaster

Topoisomerase 3-beta (TOP3B) is a type IA topoisomerase that can act on both DNA and RNA. It forms a conserved complex with the Tudor-domain protein TDRD3, which stimulates its activity, recruits it to messenger ribonucleoprotein complexes and links it to the fragile X protein FMRP. In Drosophila, Top3beta and Tdrd3 associate with each other and with Fmr1, and the complex has been implicated in synapse formation and in mRNA translation.

MODULE:dmel_tdrd3_top3b_complexDRAFTCONCRETEProtein Complexmodules/dmel_tdrd3_top3b_complex.yaml
DNA topoisomerase III-beta-TDRD3 complexGO:0140225
FB:FBgg0001994
FlyBase gene group TDRD3-TOP3B: Tdrd3-top3b type ia topoisomerase complex
FlyBase release FB2026_03 groups 2 D. melanogaster genes as tdrd3-top3b type ia topoisomerase complex (TDRD3-TOP3B); this module models that group.
GO:0140225
DNA topoisomerase III-beta-TDRD3 complex
GO term grounding the module as DNA topoisomerase III-beta-TDRD3 complex.

Modelled one part per subunit. Top3beta is given DNA topoisomerase activity; RNA topoisomerase activity has been reported for TOP3B including in flies but is not asserted here. Fmr1 is a partner, not a FlyBase member, and is not a part. FlyBase groups realized by this module: TDRD3-TOP3B (FBgg0001994). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_tdrd3_top3b_complex.yaml. Member genes with a gene review in this repository: Tdrd3, Top3beta.

3Nodes
2Parts
0Variant Sets
0Variants
2Annotons
0Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_tdrd3_top3b_complex deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

1 gene-function check(s) reflected in core functions · 0 conflict(s) · 0 evidence or coverage gap(s) (1 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
top3beta_subunit_top3beta Top3beta
UniProtKB:O96651
Gene
DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0003917
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).

Gene-review completeness (2/2 grounded genes reviewed)

2 complete review(s) · 2 with deep research · 0 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
Tdrd3 Q9VUH8 ✓ ✓ ✓
Top3beta O96651 ✓ ✓ ✓

Details

Context
Drosophila melanogasterNCBITaxon:7227
Tdrd3-Top3beta complexProtein Complexdmel_tdrd3_top3b_complex

Type IA topoisomerase Top3beta with its Tudor-domain partner Tdrd3, acting on RNA and DNA.

DNA topoisomerase III-beta-TDRD3 complexGO:0140225
Context
Drosophila melanogasterNCBITaxon:7227
Part 1: catalytic type IA topoisomerase
Top3beta subunitProtein Complextop3beta_subunit

Annotons

Top3beta Top3beta subunit
top3beta_subunit_top3beta
Participant: Gene Product: Top3beta
Gene Product:

Function

DNA topoisomerase type I (single strand cut, ATP-independent) activityGO:0003917
Part 2: Tudor-domain scaffold and stimulatory subunit
Tdrd3 subunitProtein Complextdrd3_subunit

Annotons

Tdrd3 Tdrd3 subunit
tdrd3_subunit_tdrd3
Participant: Gene Product: Tdrd3
Gene Product: