Toll signaling pathway in Drosophila melanogaster

The Toll pathway is activated when an extracellular serine protease cascade cleaves the pro-domain of the cytokine-like ligand Spaetzle, allowing it to bind the Toll receptor. In the early embryo, a maternally supplied cascade (Gastrulation defective, Snake and Easter), spatially restricted by the Pipe sulfotransferase in the ventral follicle cells, generates ventral Spaetzle and establishes the dorsal-ventral axis. In the immune response, pattern-recognition proteins (PGRP-SA, GNBP1, GNBP3) and the virulence sensor Persephone activate ModSP, Grass and Hayan, converging on the Spaetzle-processing enzyme. Activated Toll recruits the adaptors MyD88 and Tube and the kinase Pelle, which lead to degradation of the IkB protein Cactus and nuclear entry of the NF-kappaB factors Dorsal and Dif. Related Toll receptors such as Toll-7, bound by neurotrophin-like Spaetzle family ligands, act in the nervous system.

MODULE:dmel_toll_signalingDRAFTCONCRETESignaling Pathwaymodules/dmel_toll_signaling.yaml
Toll signaling pathwayGO:0008063
FB:FBgg0001054
FlyBase gene group DORS: Dorsal group
FlyBase release FB2026_03 groups 11 D. melanogaster genes as dorsal group (DORS); this module models that group.
FB:FBgg0001059
FlyBase gene group TL-CAN: Toll signaling pathway
FlyBase release FB2026_03 groups 80 D. melanogaster genes as toll signaling pathway (TL-CAN); this module models that group.
GO:0008063
Toll signaling pathway
GO term grounding the module as Toll signaling pathway.

Boundary. The module combines the FlyBase dorsal group and the Toll pathway core subgroups. Windbeutel (wbl) is a dorsal-group member that acts as an ER chaperone for Pipe. The IkB protein Cactus is in the FlyBase negative regulator set and is therefore not modelled as a part, although it is the direct target of the pathway; serpins (Spn27A, Necrotic, Spn88Ea) are likewise regulators. PGRP-SC amidases scavenge peptidoglycan and may dampen rather than drive signaling. FlyBase groups realized by this module: DORS (FBgg0001054), TL-CAN (FBgg0001059). Subgroups folded into it: TL-SPZC, TL-NFC. FlyBase also curates regulator sets for this pathway, which are context and not modelled as parts: TL-NFN (negative regulators of toll-nf-kappab signaling pathway, 19 genes); TL-SPZN (negative regulators of spatzle activating pathway, 4 genes); TL-NFP (positive regulators of toll-nf-kappab signaling pathway, 23 genes). Participants were generated from the FlyBase gene-group membership and mapped to UniProtKB by projects/FLYBASE_GENE_GROUPS/generate_modules.py from module_specs/dmel_toll_signaling.yaml. Member genes with a gene review in this repository: Dif, dl, Myd88, pll, spz, Tl, Toll-7, tub.

10Nodes
7Parts
1Variant Sets
2Variants
33Annotons
5Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dmel_toll_signaling deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

6 gene-function check(s) reflected in core functions · 0 conflict(s) · 7 evidence or coverage gap(s) (13 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
embryonic_dv_cascade_gd gd
UniProtKB:O62589
Gene
serine-type endopeptidase activity
GO:0004252
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
embryonic_dv_cascade_snk snk
UniProtKB:P05049
Gene
serine-type endopeptidase activity
GO:0004252
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
embryonic_dv_cascade_ea ea
UniProtKB:P13582
Gene
serine-type endopeptidase activity
GO:0004252
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
immune_proteases_modsp modSP
UniProtKB:Q9VER6
Gene
serine-type endopeptidase activity
GO:0004252
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
immune_proteases_grass grass
UniProtKB:Q9VB68
Gene
serine-type endopeptidase activity
GO:0004252
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
immune_proteases_psh psh
UniProtKB:Q9VWU1
Gene
serine-type endopeptidase activity
GO:0004252
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
immune_proteases_hayan Hayan
UniProtKB:A8JUP7
Gene
serine-type endopeptidase activity
GO:0004252
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
immune_proteases_spe SPE
UniProtKB:Q9VCJ8
Gene
serine-type endopeptidase activity
GO:0004252
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
spaetzle_family_ligands_spz spz
UniProtKB:P48607
Gene
Toll binding
GO:0005121
Annotation Supported
A retained annotation or curated replacement supports this function, but core_functions does not yet reflect it.
toll_receptors_tl Tl
UniProtKB:P08953
Gene
transmembrane signaling receptor activity
GO:0004888
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
toll_adaptor_complex_complex/pll pll
UniProtKB:Q05652
Complex Unit
protein serine/threonine kinase activity
GO:0004674
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
nfkb_factors_dl dl
UniProtKB:P15330
Gene
DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000981
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
nfkb_factors_dif Dif
UniProtKB:P98149
Gene
DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000981
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).

Gene-review completeness (12/36 grounded genes reviewed)

8 complete review(s) · 11 with deep research · 24 missing review · 1 reviewed but lacking deep research

Gene Review Complete Deep research
MP1 A0A126GUP6 ✗ — —
GNBP-like3 A1ZBU5 ✗ — —
Hayan A8JUP7 ✗ — —
PGRP-SC1a C0HK98 ✗ — —
PGRP-SC1b C0HK99 ✗ — —
Dif P98149 ✓ ✓ ✓
dl P15330 ✓ ✓ ✓
spirit E1JJG1 ✗ — —
ea P13582 ✓ ✓ ✓
Myd88 A1Z7T8 ✓ ✓ ✓
NT1 B7TB45 ✓ ✓ ✗
wbl O44342 ✗ — —
gd O62589 ✗ — —
ndl P98159 ✗ — —
pll Q05652 ✓ 75/76 ✓
pip Q86BJ3 ✗ — —
sphinx1 Q8IQ79 ✗ — —
GNBP3 Q9NHA8 ✗ — —
GNBP1 Q9NHB0 ✗ — —
CtsK1 Q9V3U6 ✗ — —
PGRP-SC2 Q9V4X2 ✗ — —
grass Q9VB68 ✗ — —
SPE Q9VCJ8 ✗ — —
modSP Q9VER6 ✗ — —
wek Q9VJN5 ✗ — —
Tehao Q9VJX9 ✗ — —
sphinx2 Q9VS71 ✗ — —
psh Q9VWU1 ✗ — —
sphe Q9VXC8 ✗ — —
PGRP-SA Q9VYX7 ✗ — —
snk P05049 ✓ ✓ ✓
spz P48607 ✓ ✓ ✓
spz5 Q9VZX1 ✓ ✓ ✓
Tl P08953 ✓ 102/104 ✓
Toll-7 Q7KIN0 ✓ 22/24 ✓
tub P22812 ✓ 54/55 ✓

Details

Context
Drosophila melanogasterNCBITaxon:7227
Toll signaling pathwaySignaling Pathwaydmel_toll_signaling

Protease cascades that activate Spaetzle, the Toll receptor, the MyD88-Tube-Pelle adaptor complex and NF-kappaB factors Dorsal and Dif, used for dorsal-ventral patterning and antimicrobial defense.

Toll signaling pathwayGO:0008063
Context
Drosophila melanogasterNCBITaxon:7227

Connections

The terminal protease (Easter or SPE) cleaves pro-Spaetzle into its active form.
spaetzle_family_ligands -> toll_receptors Positively Regulates
Processed Spaetzle binds and activates Toll.
toll_receptors -> toll_adaptor_complex Positively Regulates
Activated Toll recruits MyD88, Tube and Pelle.
toll_adaptor_complex -> nfkb_factors Positively Regulates
Pelle signaling leads to Cactus degradation and nuclear entry of Dorsal and Dif.
Part 1: extracellular ligand activation
Spaetzle-activating protease cascadesSignaling Pathwayspaetzle_activation_cascades
Variant set: Embryonic or immune Spaetzle-activating cascade (One Or More)
Embryonic dorsal-ventral protease cascadeSignaling Pathwayembryonic_dv_cascade

Windbeutel is required in the follicle-cell ER for Pipe, which sulfates eggshell components ventrally; Nudel, Gastrulation defective, Snake and Easter form the protease cascade whose product, Easter, cleaves Spaetzle.

Annotons

wbl Embryonic dorsal-ventral protease cascade
embryonic_dv_cascade_wbl
Participant: Gene Product: wbl
Gene Product:

Processes

dorsal/ventral axis specificationGO:0009950
pip Embryonic dorsal-ventral protease cascade
embryonic_dv_cascade_pip
Participant: Gene Product: pip
Gene Product:

Processes

dorsal/ventral axis specificationGO:0009950
ndl Embryonic dorsal-ventral protease cascade
embryonic_dv_cascade_ndl
Participant: Gene Product: ndl
Gene Product:

Processes

dorsal/ventral axis specificationGO:0009950
gd Embryonic dorsal-ventral protease cascade
embryonic_dv_cascade_gd
Participant: Gene Product: gd
Gene Product:

Function

serine-type endopeptidase activityGO:0004252

Processes

dorsal/ventral axis specificationGO:0009950
snk Embryonic dorsal-ventral protease cascade
embryonic_dv_cascade_snk
Participant: Gene Product: snk
Gene Product:

Function

serine-type endopeptidase activityGO:0004252

Processes

dorsal/ventral axis specificationGO:0009950
ea Embryonic dorsal-ventral protease cascade
embryonic_dv_cascade_ea
Participant: Gene Product: ea
Gene Product:

Function

serine-type endopeptidase activityGO:0004252

Processes

dorsal/ventral axis specificationGO:0009950
Immune Spaetzle-activating cascadeSignaling Pathwayimmune_cascade

Connections

immune_recognition -> immune_proteases Positively Regulates
Recognition complexes activate ModSP and the downstream protease cascade.
Part 1: microbial pattern recognition
Pattern-recognition proteinsSignaling Pathwayimmune_recognition

PGRP-SA and GNBP1 sense Lys-type peptidoglycan and GNBP3 senses fungal beta-glucan; the amidases PGRP-SC1a, SC1b and SC2, and GNBP-like3, are further FlyBase core members.

Annotons

PGRP-SA Pattern-recognition proteins
immune_recognition_pgrp_sa
Participant: Gene Product: PGRP-SA
Gene Product:
GNBP1 Pattern-recognition proteins
immune_recognition_gnbp1
Participant: Gene Product: GNBP1
Gene Product:
GNBP3 Pattern-recognition proteins
immune_recognition_gnbp3
Participant: Gene Product: GNBP3
Gene Product:
GNBP-like3 Pattern-recognition proteins
immune_recognition_gnbp_like3
Participant: Gene Product: GNBP-like3
Gene Product:
GNBP-like3UniProtKB:A1ZBU5
PGRP-SC1a Pattern-recognition proteins
immune_recognition_pgrp_sc1a
Participant: Gene Product: PGRP-SC1a
Gene Product:
PGRP-SC1b Pattern-recognition proteins
immune_recognition_pgrp_sc1b
Participant: Gene Product: PGRP-SC1b
Gene Product:
PGRP-SC2 Pattern-recognition proteins
immune_recognition_pgrp_sc2
Participant: Gene Product: PGRP-SC2
Gene Product:
Part 2: protease cascade converging on SPE
Immune serine protease cascadeSignaling Pathwayimmune_proteases

ModSP and Grass relay recognition signals, Persephone senses microbial proteases, and Hayan and SPE lead to Spaetzle cleavage. Other FlyBase core members (Spirit, Sphinx1, Sphinx2, Sphe, MP1, CtsK1) contribute to Spaetzle activation in specific contexts.

Annotons

modSP Immune serine protease cascade
immune_proteases_modsp
Participant: Gene Product: modSP
Gene Product:

Function

serine-type endopeptidase activityGO:0004252

Processes

Toll receptor ligand protein activation cascadeGO:0160032
grass Immune serine protease cascade
immune_proteases_grass
Participant: Gene Product: grass
Gene Product:

Function

serine-type endopeptidase activityGO:0004252

Processes

Toll receptor ligand protein activation cascadeGO:0160032
psh Immune serine protease cascade
immune_proteases_psh
Participant: Gene Product: psh
Gene Product:

Function

serine-type endopeptidase activityGO:0004252

Processes

Toll receptor ligand protein activation cascadeGO:0160032
Hayan Immune serine protease cascade
immune_proteases_hayan
Participant: Gene Product: Hayan
Gene Product:

Function

serine-type endopeptidase activityGO:0004252

Processes

Toll receptor ligand protein activation cascadeGO:0160032
SPE Immune serine protease cascade
immune_proteases_spe
Participant: Gene Product: SPE
Gene Product:

Function

serine-type endopeptidase activityGO:0004252

Processes

Toll receptor ligand protein activation cascadeGO:0160032
spirit Immune serine protease cascade
immune_proteases_spirit
Participant: Gene Product: spirit
Gene Product:

Processes

Toll receptor ligand protein activation cascadeGO:0160032
sphinx1 Immune serine protease cascade
immune_proteases_sphinx1
Participant: Gene Product: sphinx1
Gene Product:

Processes

Toll receptor ligand protein activation cascadeGO:0160032
sphinx2 Immune serine protease cascade
immune_proteases_sphinx2
Participant: Gene Product: sphinx2
Gene Product:

Processes

Toll receptor ligand protein activation cascadeGO:0160032
sphe Immune serine protease cascade
immune_proteases_sphe
Participant: Gene Product: sphe
Gene Product:

Processes

Toll receptor ligand protein activation cascadeGO:0160032
MP1 Immune serine protease cascade
immune_proteases_mp1
Participant: Gene Product: MP1
Gene Product:

Processes

Toll receptor ligand protein activation cascadeGO:0160032
CtsK1 Immune serine protease cascade
immune_proteases_ctsk1
Participant: Gene Product: CtsK1
Gene Product:

Processes

Toll receptor ligand protein activation cascadeGO:0160032
Part 2: ligands
Spaetzle-family ligandsSignaling Pathwayspaetzle_family_ligands

Annotons

spz Spaetzle-family ligands
spaetzle_family_ligands_spz
Participant: Gene Product: spz
Gene Product:

Function

Toll bindingGO:0005121
spz5 Spaetzle-family ligands
spaetzle_family_ligands_spz5
Participant: Gene Product: spz5
Gene Product:
NT1 Spaetzle-family ligands
spaetzle_family_ligands_nt1
Participant: Gene Product: NT1
Gene Product:
Part 3: receptors
Toll receptors and associated membrane proteinSignaling Pathwaytoll_receptors

Toll is the receptor for processed Spaetzle; Toll-7 is a neuronal Toll receptor bound by NT1. Tehao is a membrane protein that FlyBase places among the core components; its mechanism is not well defined.

Annotons

Tl Toll receptors and associated membrane protein
toll_receptors_tl
Participant: Gene Product: Tl
Gene Product:

Function

transmembrane signaling receptor activityGO:0004888
Toll-7 Toll receptors and associated membrane protein
toll_receptors_toll_7
Participant: Gene Product: Toll-7
Gene Product:
Tehao Toll receptors and associated membrane protein
toll_receptors_tehao
Participant: Gene Product: Tehao
Gene Product:
Part 4: intracellular signal transduction
MyD88-Tube-Pelle adaptor complexSignaling Pathwaytoll_adaptor_complex

MyD88 binds the Toll TIR domain and assembles a death-domain complex with Tube and the kinase Pelle; Weckle helps recruit MyD88 to Toll.

Annotons

MyD88-Tube-Pelle adaptor complex
toll_adaptor_complex_complex
Participant: Protein Complex: MyD88-Tube-Pelle adaptor complex
Protein Complex:
MyD88-Tube-Pelle adaptor complex
Active units:
Myd88
Participant: Gene Product: Myd88
Gene Product:
tub
Participant: Gene Product: tub
Gene Product:
pll
Participant: Gene Product: pll
Gene Product:
Function:
protein serine/threonine kinase activityGO:0004674
wek
Participant: Gene Product: wek
Gene Product:
Part 5: transcriptional output
NF-kappaB factors Dorsal and DifSignaling Pathwaynfkb_factors

Annotons

dl NF-kappaB factors Dorsal and Dif
nfkb_factors_dl
Participant: Gene Product: dl
Gene Product:

Function

DNA-binding transcription factor activity, RNA polymerase II-specificGO:0000981
Dif NF-kappaB factors Dorsal and Dif
nfkb_factors_dif
Participant: Gene Product: Dif
Gene Product:

Function

DNA-binding transcription factor activity, RNA polymerase II-specificGO:0000981