Dolichol / dolichyl-phosphate biosynthesis (cis-PT -> DOLPP1 -> SRD5A3 -> DOLK)

Dolichyl phosphate (Dol-P) is the essential polyprenol lipid carrier on which the eukaryotic glycosylation machinery assembles and delivers glycans: it anchors the lipid-linked oligosaccharide for N-linked glycosylation, the mannose/glucose donors (Dol-P-Man, Dol-P-Glc) for N-glycan, O-mannose, GPI-anchor and C/O-mannosylation, and it is regenerated after each transfer cycle. Its biosynthesis begins where the isoprenoid-diphosphate trunk ends: the ER-membrane cis-prenyltransferase (cis-PT) complex — catalytic subunit DHDDS plus the non-catalytic partner NUS1 (NgBR) — elongates (2E,6E)-farnesyl diphosphate (FPP) by many cis (Z)-condensations of isopentenyl diphosphate (IPP) to the long-chain dehydrodolichyl diphosphate (dehydro-Dol-PP). This polyprenyl diphosphate is dephosphorylated by the dolichyl-diphosphate phosphatase DOLPP1 (which also recycles the Dol-PP released after oligosaccharyltransferase moves the glycan onto protein), and the alpha-terminal isoprene unit is saturated by the polyprenol reductase SRD5A3 to give dolichol. Dolichol kinase DOLK then phosphorylates dolichol (CTP-dependent) to Dol-P, completing the carrier pool. All five enzymes reside in the endoplasmic reticulum membrane. Defects across this module cause congenital disorders of glycosylation (DHDDS-CDG/RP59, NUS1-CDG/epileptic encephalopathy, SRD5A3-CDG, DOLK-CDG) and inherited retinal dystrophy.

MODULE:dolichyl_phosphate_biosynthesisDRAFTMetabolic Pathwaymodules/dolichyl_phosphate_biosynthesis.yaml
dolichyl monophosphate biosynthetic processGO:0043048 polyprenol biosynthetic processGO:0016094 dolichol-linked oligosaccharide biosynthetic processGO:0006488
GO:0043048
dolichyl monophosphate biosynthetic process
The pathway culminates in dolichyl phosphate (Dol-P) synthesis (GO:0043048).
GO:0016094
polyprenol biosynthetic process
cis-PT + reductase build the long-chain polyprenol/dolichol backbone (GO:0016094).
GO:0006488
dolichol-linked oligosaccharide biosynthetic process
Dol-P is the carrier for the lipid-linked oligosaccharide used in N-glycosylation (GO:0006488).
file:human/DHDDS/DHDDS-ai-review.yaml
DHDDS gene review (human)
cis-PT catalytic subunit (UniProtKB:Q86SQ9, GO:0045547) matches the completed human DHDDS review.
file:human/NUS1/NUS1-ai-review.yaml
NUS1 gene review (human)
cis-PT non-catalytic subunit / NgBR (UniProtKB:Q96E22, contributes_to GO:0045547) matches the completed human NUS1 review.
file:human/DOLPP1/DOLPP1-ai-review.yaml
DOLPP1 gene review (human)
Dolichyl-diphosphate phosphatase (UniProtKB:Q86YN1, GO:0047874) matches the completed human DOLPP1 review.
file:human/SRD5A3/SRD5A3-ai-review.yaml
SRD5A3 gene review (human)
Polyprenol reductase (UniProtKB:Q9H8P0, GO:0160198) matches the completed human SRD5A3 review.
file:human/DOLK/DOLK-ai-review.yaml
DOLK gene review (human)
Dolichol kinase (UniProtKB:Q9UPQ8, GO:0004168) matches the completed human DOLK review.
5Nodes
4Parts
0Variant Sets
0Variants
5Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:dolichyl_phosphate_biosynthesis deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (5/5 grounded genes reviewed)

5 complete review(s) · 0 with deep research · 0 missing review · 5 reviewed but lacking deep research

Gene Review Complete Deep research
DHDDS Q86SQ9
DOLK Q9UPQ8
DOLPP1 Q86YN1
NUS1 Q96E22
SRD5A3 Q9H8P0

Details

Context
endoplasmic reticulum membraneGO:0005789
Dolichol / dolichyl-phosphate biosynthesisMetabolic Pathwaydolichyl_phosphate_biosynthesis
dolichyl monophosphate biosynthetic processGO:0043048 polyprenol biosynthetic processGO:0016094 dolichol-linked oligosaccharide biosynthetic processGO:0006488
Context
endoplasmic reticulum membraneGO:0005789

Dolichol / dolichyl-phosphate biosynthesis (GO:0043048 + GO:0016094), grounded to five completed human gene reviews; it consumes FPP/IPP from the isoprenoid_diphosphate_biosynthesis module and supplies the Dol-P glycan carrier to N-glycosylation (dolichol-linked oligosaccharide, GO:0006488) and to the downstream DPM1/DPM2/DPM3 + MPDU1 utilization steps (separate, already reviewed). Steps: (1) ER cis-PT complex = DHDDS (Q86SQ9 PTHR10291, catalytic, GO:0045547) + NUS1/NgBR (Q96E22 PTHR21528, obligate non-catalytic partner, contributes_to GO:0045547 via its C-terminal -RXG motif; in_complex GO:1904423) elongates FPP with many cis-IPP units -> dehydrodolichyl-PP; (2) DOLPP1 (Q86YN1 PTHR11247, GO:0047874) dephosphorylates Dol-PP -> Dol-P + Pi (also the recycling step after OST glycan transfer); (3) SRD5A3 (Q9H8P0 PTHR14624, GO:0160198 polyprenal/polyprenol reductase) saturates the alpha-isoprene unit -> dolichol; (4) DOLK (Q9UPQ8 PTHR13205, GO:0004168 dolichol kinase, CTP-dependent) -> Dol-P. All ER-membrane (GO:0005789). Note the linear de-novo order (cis-PT -> dephosphorylation -> reduction -> kinase) vs the Dol-PP recycling arm DOLPP1 also serves; modeled as a single Dol-P-producing pathway. Defects: DHDDS-CDG/ RP59, NUS1-CDG/epileptic encephalopathy, SRD5A3-CDG, DOLK-CDG. GO term ids/labels verified against the local go.db; module passes structural + term-label validation.

Connections

Dehydrodolichyl-PP is dephosphorylated toward the dolichol branch.
The dephosphorylated polyprenol/dehydrodolichol is reduced by SRD5A3.
polyprenol_reduction -> dolichol_kinase Provides Input For
Dolichol from SRD5A3 is phosphorylated by DOLK to Dol-P.
Part 1: cis-prenyltransferase (FPP + nIPP -> dehydrodolichyl-PP)
cis-Prenyltransferase complex (DHDDS catalytic + NUS1 partner)Reactioncis_prenyltransferase

Annotons

DHDDS (+NUS1): dehydrodolichyl diphosphate synthase (cis-PT)
dhdds_activity
Participant: Family: DHDDS / cis-prenyltransferase (UPP synthase) family
Family:
DHDDS / cis-prenyltransferase (UPP synthase) familyPANTHER:PTHR10291
Representative Members: DHDDS (human; catalytic subunit)UniProtKB:Q86SQ9

Function

dehydrodolichyl diphosphate synthase activity (cis-prenyltransferase)GO:0045547
Substrates: (2E,6E)-farnesyl diphosphate (FPP) isopentenyl diphosphate (IPP; multiple, Mg2+)
Products: dehydrodolichyl diphosphate (polyprenyl-PP) diphosphate

Locations

endoplasmic reticulum membraneGO:0005789

Elongate FPP with many cis-IPP units to dehydrodolichyl diphosphate.

NUS1/NgBR: cis-PT non-catalytic subunit
nus1_partner
Participant: Family: NUS1 / NgBR (Nogo-B receptor) family
Family:
NUS1 / NgBR (Nogo-B receptor) familyPANTHER:PTHR21528
Representative Members: NUS1 (human; NgBR)UniProtKB:Q96E22

Function

dehydrodolichyl diphosphate synthase activity (contributing subunit)GO:0045547
Substrates: (2E,6E)-farnesyl diphosphate (FPP) isopentenyl diphosphate (IPP)
Products: dehydrodolichyl diphosphate (polyprenyl-PP)

Locations

endoplasmic reticulum membraneGO:0005789

Stabilize DHDDS and complete the cis-PT active site (RXG motif).

Part 2: dolichyl-diphosphate dephosphorylation / recycling
Dolichyl-diphosphate phosphatase (DOLPP1)Reactiondolpp_dephosphorylation

Annotons

DOLPP1: dolichyldiphosphatase
dolpp1_activity
Participant: Family: DOLPP1 / PAP2 lipid-phosphatase (dolichyldiphosphatase) family
Family:
DOLPP1 / PAP2 lipid-phosphatase (dolichyldiphosphatase) familyPANTHER:PTHR11247
Representative Members: DOLPP1 (human)UniProtKB:Q86YN1

Function

dolichyldiphosphatase activityGO:0047874
Substrates: dolichyl diphosphate (Dol-PP) H2O
Products: dolichyl phosphate (Dol-P) phosphate

Locations

endoplasmic reticulum membraneGO:0005789

Hydrolyze dolichyl diphosphate to dolichyl phosphate + Pi.

Part 3: polyprenol -> dolichol reduction
Polyprenol reductase (SRD5A3)Reactionpolyprenol_reduction

Annotons

SRD5A3: polyprenol reductase
srd5a3_activity
Participant: Family: SRD5A3 / steroid 5-alpha-reductase (polyprenol reductase) family
Family:
SRD5A3 / steroid 5-alpha-reductase (polyprenol reductase) familyPANTHER:PTHR14624
Representative Members: SRD5A3 (human)UniProtKB:Q9H8P0

Function

polyprenal reductase activityGO:0160198
Substrates: polyprenol / dehydrodolichol (alpha-unsaturated) NADPH
Products: dolichol

Locations

endoplasmic reticulum membraneGO:0005789

Saturate the alpha-terminal isoprene unit, yielding dolichol.

Part 4: dolichol phosphorylation -> Dol-P
Dolichol kinase (DOLK)Reactiondolichol_kinase

Annotons

DOLK: dolichol kinase
dolk_activity
Participant: Family: DOLK / dolichol kinase family
Family:
DOLK / dolichol kinase familyPANTHER:PTHR13205
Representative Members: DOLK (human)UniProtKB:Q9UPQ8

Function

dolichol kinase activityGO:0004168
Substrates: dolichol CTP
Products: dolichyl phosphate (Dol-P) CDP

Locations

endoplasmic reticulum membraneGO:0005789

Phosphorylate dolichol (CTP donor) to dolichyl phosphate (Dol-P).