De novo fatty acid synthesis / lipogenesis (ACLY -> ACACA/ACACB -> FASN -> OLAH)

De novo lipogenesis builds long-chain saturated fatty acids (chiefly palmitate, C16:0) from carbohydrate- derived carbon in the cytosol, supplying membrane lipids, storage triacylglycerol and signalling precursors. Citrate exported from mitochondria is cleaved by ATP-citrate lyase (ACLY) to regenerate cytosolic acetyl-CoA (plus oxaloacetate); this acetyl-CoA also feeds cholesterol synthesis and protein acetylation. Acetyl-CoA carboxylase then carboxylates acetyl-CoA to malonyl-CoA in the committed, rate- limiting step - a biotin-dependent reaction carried out by two isozymes with distinct roles: the cytosolic ACACA (ACC1) supplies malonyl-CoA for fatty acid synthesis, whereas ACACB (ACC2), anchored at the mitochondrial outer membrane, makes a malonyl-CoA pool that inhibits carnitine palmitoyltransferase 1 and thereby restrains fatty acid beta-oxidation. Fatty acid synthase (FASN), a homodimeric multifunctional megaenzyme, then condenses one acetyl-CoA primer with seven malonyl-CoA units in iterative NADPH-dependent cycles - using its ketoacyl-synthase, malonyl/acetyl-transacylase, ketoacyl-reductase, dehydratase, enoyl- reductase, acyl-carrier and thioesterase activities - to produce palmitate. The auxiliary thioesterase OLAH (thioesterase II) can release medium-chain fatty acids early from the FASN acyl-carrier, shifting the product spectrum (e.g. in lactating mammary gland). ACLY, ACACA and FASN are central to lipogenic tissues and are cancer and metabolic-disease drug targets.

MODULE:fatty_acid_de_novo_synthesisDRAFTMetabolic Pathwaymodules/fatty_acid_de_novo_synthesis.yaml
fatty acid biosynthetic processGO:0006633 malonyl-CoA biosynthetic processGO:2001295 acetyl-CoA biosynthetic processGO:0006085
GO:0006633
fatty acid biosynthetic process
ACLY, ACACA/ACACB, FASN and OLAH carry out de novo fatty acid synthesis (GO:0006633).
GO:2001295
malonyl-CoA biosynthetic process
ACACA/ACACB produce malonyl-CoA, the C2-donor and FASN substrate (GO:2001295).
file:human/ACLY/ACLY-ai-review.yaml
ACLY gene review (human)
ATP-citrate lyase (UniProtKB:P53396, GO:0003878) matches the completed human ACLY review.
file:human/ACACA/ACACA-ai-review.yaml
ACACA gene review (human)
Acetyl-CoA carboxylase 1 (cytosolic) (UniProtKB:Q13085, GO:0003989) matches the completed human ACACA review.
file:human/ACACB/ACACB-ai-review.yaml
ACACB gene review (human)
Acetyl-CoA carboxylase 2 (mito-OM, FAO-regulating) (UniProtKB:O00763, GO:0003989) matches the completed human ACACB review.
file:human/FASN/FASN-ai-review.yaml
FASN gene review (human)
Fatty acid synthase (UniProtKB:P49327, GO:0004312) matches the completed human FASN review.
file:human/OLAH/OLAH-ai-review.yaml
OLAH gene review (human)
Oleoyl-ACP hydrolase / thioesterase II (UniProtKB:Q9NV23, GO:0016297) matches the completed human OLAH review.
5Nodes
4Parts
0Variant Sets
0Variants
4Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:fatty_acid_de_novo_synthesis deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (5/5 grounded genes reviewed)

5 complete review(s) · 0 with deep research · 0 missing review · 5 reviewed but lacking deep research

Gene Review Complete Deep research
ACACA Q13085
ACACB O00763
ACLY P53396
FASN P49327
OLAH Q9NV23

Details

Context
cytosolGO:0005829 mitochondrial outer membraneGO:0005741
De novo fatty acid synthesis / lipogenesisMetabolic Pathwayfatty_acid_de_novo_synthesis
fatty acid biosynthetic processGO:0006633 malonyl-CoA biosynthetic processGO:2001295 acetyl-CoA biosynthetic processGO:0006085
Context
cytosolGO:0005829 mitochondrial outer membraneGO:0005741

De novo fatty acid synthesis / lipogenesis (GO:0006633), grounded to five completed human gene reviews. Cytosolic pathway: ACLY (P53396 PTHR23118, GO:0003878) citrate -> acetyl-CoA + OAA; ACC (biotin-dependent, GO:0003989) acetyl-CoA -> malonyl-CoA - two isozymes, both PTHR45728, modelled on one node: ACACA/ACC1 (Q13085, cytosolic, lipogenic, rate-limiting) and ACACB/ACC2 (O00763, mitochondrial-outer-membrane GO:0005741, its malonyl-CoA inhibits CPT1 to restrain beta-oxidation - a regulatory role, captured in the ACACB review as negative regulation of fatty acid beta-oxidation); FASN (P49327 PTHR43775, GO:0004312, + seven partial-domain activities in its review) condenses acetyl-CoA + 7 malonyl-CoA (NADPH) -> palmitate; OLAH/thioesterase II (Q9NV23 PTHR11487, GO:0016297) releases medium-chain fatty acids early (mammary gland). Node locations are cytosol (the lipogenic compartment); ACACB's mito-OM location and FAO- regulatory role are noted in its gene review. Curation: ACACA mitochondrion IBA is a paralog/compartment mis-propagation (that is ACACB); OLAH acyl-CoA-hydrolase IEAs are homology-inferred vs its physiological acyl-ACP preference. Drug/cancer targets (ACLY/ACACA/FASN). GO term ids/labels verified against the local go.db; module passes structural + term-label validation.

Connections

ACLY-made acetyl-CoA is the substrate ACC carboxylates to malonyl-CoA (and the FASN primer).
ACACA-made malonyl-CoA is the C2-donor FASN uses to elongate the chain.
OLAH hydrolyses the FASN-bound acyl-ACP to release medium-chain fatty acids early.
Part 1: cytosolic acetyl-CoA generation (citrate -> acetyl-CoA)
ATP-citrate lyase (ACLY)Reactionacetyl_coa_generation

Annotons

ACLY: ATP-citrate lyase
acly_activity
Participant: Family: ACLY / ATP-citrate lyase family
Family:
ACLY / ATP-citrate lyase familyPANTHER:PTHR23118
Representative Members: ACLY (human)UniProtKB:P53396

Function

ATP citrate synthase activityGO:0003878
Substrates: citrate ATP CoA
Products: acetyl-CoA oxaloacetate ADP + phosphate

Locations

cytosolGO:0005829

Regenerate cytosolic acetyl-CoA from mitochondria-exported citrate.

Part 2: acetyl-CoA carboxylation (acetyl-CoA -> malonyl-CoA)
Acetyl-CoA carboxylase (ACACA cytosolic / ACACB mito-OM)Reactionmalonyl_coa_synthesis

Annotons

ACACA/ACACB: acetyl-CoA carboxylase (biotin-dependent)
acc_activity
Participant: Family: ACC / acetyl-CoA carboxylase family
Family:
ACC / acetyl-CoA carboxylase familyPANTHER:PTHR45728
Representative Members: ACACA / ACC1 (human; cytosolic lipogenic)UniProtKB:Q13085 ACACB / ACC2 (human; mito-OM, FAO-regulating)UniProtKB:O00763

Function

acetyl-CoA carboxylase activityGO:0003989
Substrates: acetyl-CoA hydrogencarbonate (HCO3-) ATP (biotin cofactor)
Products: malonyl-CoA ADP + phosphate

Locations

cytosolGO:0005829

Carboxylate acetyl-CoA to malonyl-CoA (committed, rate-limiting step).

Part 3: fatty acid chain assembly (acetyl-CoA + malonyl-CoA -> palmitate)
Fatty acid synthase (FASN)Reactionpalmitate_synthesis

Annotons

FASN: fatty acid synthase (megasynthase)
fasn_activity
Participant: Family: FASN / fatty acid synthase (type I) family
Family:
FASN / fatty acid synthase (type I) familyPANTHER:PTHR43775
Representative Members: FASN (human)UniProtKB:P49327

Function

fatty acid synthase activityGO:0004312
Substrates: acetyl-CoA (primer) malonyl-CoA (7 units) NADPH
Products: palmitate (C16:0) CoA + CO2

Locations

cytosolGO:0005829

Assemble palmitate by iterative condensation/reduction cycles.

Part 4: medium-chain product release (acyl-ACP -> medium-chain fatty acid)
Oleoyl-ACP hydrolase / thioesterase II (OLAH)Reactionmedium_chain_release

Annotons

OLAH: fatty acyl-ACP hydrolase (thioesterase II)
olah_activity
Participant: Family: OLAH / S-acyl fatty acid synthase thioesterase family
Family:
OLAH / S-acyl fatty acid synthase thioesterase familyPANTHER:PTHR11487
Representative Members: OLAH (human)UniProtKB:Q9NV23

Function

fatty acyl-[ACP] hydrolase activityGO:0016297
Substrates: medium-chain acyl-[ACP] (on the FASN carrier) H2O
Products: medium-chain fatty acid (C8-C14) holo-[ACP]

Locations

cytosolGO:0005829

Release medium-chain fatty acids from the FASN acyl-carrier.