Microsomal fatty-acid elongation cycle (ELOVL -> HSD17B12 -> HACD1/2 -> TECR)

Most fatty acids longer than the C16 palmitate made by cytosolic fatty-acid synthase are produced by the microsomal elongation system, a four-reaction cycle on the cytosolic face of the endoplasmic-reticulum membrane that adds two carbons per turn. Each round begins with the rate-limiting, substrate-selective condensation of an acyl-CoA with malonyl-CoA to a 3-oxoacyl-CoA (releasing CO2), catalysed by one of seven fatty-acid elongases (ELOVL1-7) whose chain-length and saturation preferences define which fatty acids a cell makes: ELOVL1/3/6 handle saturated and monounsaturated substrates (ELOVL6 the C16->C18 lipogenic step, ELOVL1 the C22->C26 very-long-chain step for sphingolipids/myelin, ELOVL3 skin/brown-fat lipids), ELOVL2/5 the C20/C22 polyunsaturated fatty acids en route to DHA, ELOVL7 C18-C20 substrates, and ELOVL4 the unique ultra-long-chain (C26-C38) fatty acids of retina, skin and brain. The 3-oxoacyl-CoA is then reduced by the NADPH-dependent 3-ketoacyl-CoA reductase HSD17B12 (KAR) to (3R)-3-hydroxyacyl-CoA, dehydrated by the 3-hydroxyacyl-CoA dehydratases HACD1/HACD2 to (2E)-enoyl-CoA, and reduced by the NADPH-dependent trans-2-enoyl-CoA reductase TECR to the two-carbon-extended saturated acyl-CoA, which re-enters the cycle. The reductase/dehydratase/reductase enzymes are shared across all ELOVLs; substrate specificity resides in the elongase. Inherited defects span the products: ELOVL1 (IKSHD ichthyosis/spastic quadriplegia), ELOVL4 (Stargardt-like macular dystrophy, SCA34, ichthyosis), HACD1 (congenital myopathy), TECR (intellectual disability), reflecting the roles of very-long-chain and ultra-long-chain fatty acids in skin barrier, myelin, retina and muscle.

MODULE:fatty_acid_elongation_cycleDRAFTMetabolic Pathwaymodules/fatty_acid_elongation_cycle.yaml
fatty acid elongationGO:0030497 very long-chain fatty acid biosynthetic processGO:0042761
GO:0030497
fatty acid elongation
ELOVLs, HSD17B12, HACD1/2 and TECR run the microsomal fatty-acid elongation cycle (GO:0030497).
GO:0042761
very long-chain fatty acid biosynthetic process
The cycle produces very-long-chain (and ultra-long-chain) fatty acids (GO:0042761).
file:human/ELOVL1/ELOVL1-ai-review.yaml
ELOVL1 gene review (human)
The condensation step (UniProtKB:Q9BW60, GO:0009922) matches the completed human ELOVL1 review.
file:human/ELOVL2/ELOVL2-ai-review.yaml
ELOVL2 gene review (human)
The PUFA condensation step (UniProtKB:Q9NXB9, GO:0009922) matches the completed human ELOVL2 review.
file:human/ELOVL3/ELOVL3-ai-review.yaml
ELOVL3 gene review (human)
The condensation step (UniProtKB:Q9HB03, GO:0009922) matches the completed human ELOVL3 review.
file:human/ELOVL4/ELOVL4-ai-review.yaml
ELOVL4 gene review (human)
The ultra-long-chain condensation step (UniProtKB:Q9GZR5, GO:0009922) matches the completed human ELOVL4 review.
file:human/ELOVL6/ELOVL6-ai-review.yaml
ELOVL6 gene review (human)
The C16->C18 condensation step (UniProtKB:Q9H5J4, GO:0009922) matches the completed human ELOVL6 review.
file:human/ELOVL7/ELOVL7-ai-review.yaml
ELOVL7 gene review (human)
The condensation step (UniProtKB:A1L3X0, GO:0009922) matches the completed human ELOVL7 review.
file:human/HSD17B12/HSD17B12-ai-review.yaml
HSD17B12 gene review (human)
The 3-ketoacyl-CoA reduction step (UniProtKB:Q53GQ0, GO:0141040) matches the completed human HSD17B12 review.
file:human/HACD1/HACD1-ai-review.yaml
HACD1 gene review (human)
The 3-hydroxyacyl-CoA dehydration step (UniProtKB:B0YJ81, GO:0102158) matches the completed human HACD1 review.
file:human/HACD2/HACD2-ai-review.yaml
HACD2 gene review (human)
The 3-hydroxyacyl-CoA dehydration step (UniProtKB:Q6Y1H2, GO:0102158) matches the completed human HACD2 review.
file:human/TECR/TECR-ai-review.yaml
TECR gene review (human)
The trans-2-enoyl-CoA reduction step (UniProtKB:Q9NZ01, GO:0102758) matches the completed human TECR review.
5Nodes
4Parts
0Variant Sets
0Variants
4Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:fatty_acid_elongation_cycle deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Gene-review completeness (10/10 grounded genes reviewed)

9 complete review(s) · 0 with deep research · 0 missing review · 10 reviewed but lacking deep research

Gene Review Complete Deep research
ELOVL1 Q9BW60 ✓ ✓ ✗
ELOVL2 Q9NXB9 ✓ 40/44 ✗
ELOVL3 Q9HB03 ✓ ✓ ✗
ELOVL4 Q9GZR5 ✓ ✓ ✗
ELOVL6 Q9H5J4 ✓ ✓ ✗
ELOVL7 A1L3X0 ✓ ✓ ✗
HACD1 B0YJ81 ✓ ✓ ✗
HACD2 Q6Y1H2 ✓ ✓ ✗
HSD17B12 Q53GQ0 ✓ ✓ ✗
TECR Q9NZ01 ✓ ✓ ✗

Details

Context
endoplasmic reticulum membraneGO:0005789
Microsomal fatty-acid elongation cycleMetabolic Pathwayfatty_acid_elongation_cycle
fatty acid elongationGO:0030497 very long-chain fatty acid biosynthetic processGO:0042761
Context
endoplasmic reticulum membraneGO:0005789

Microsomal fatty-acid elongation cycle (GO:0030497 + GO:0042761), grounded to ten completed human gene reviews, all ER-membrane enzymes of the fatty acid elongase complex (GO:0009923). CONDENSATION (rate-limiting, substrate-selective): six of the seven ELOVLs reviewed here (ELOVL1 Q9BW60, ELOVL2 Q9NXB9, ELOVL3 Q9HB03, ELOVL4 Q9GZR5, ELOVL6 Q9H5J4, ELOVL7 A1L3X0) share PTHR11157 and all carry GO:0009922 fatty acid elongase activity (the single correct MF — no finer chain-length GO term exists; specificity noted per-gene: ELOVL6 C16->C18, ELOVL1 sat/monounsat VLCFA, ELOVL2 C20/C22 PUFA->DHA, ELOVL3 skin/brown-fat, ELOVL4 ultra-long-chain C26-C38, ELOVL7 C18-C20; ELOVL5 already reviewed earlier). The other three steps are SHARED across all ELOVLs: HSD17B12/KAR (Q53GQ0 PTHR43899, GO:0141040 3-oxoacyl-CoA reductase — its legacy 17-beta-HSD/estradiol activity is non-core), HACD1 (B0YJ81, muscle) + HACD2 (Q6Y1H2, ubiquitous) sharing PTHR11035 (GO:0102158 (3R)-3-hydroxyacyl-CoA dehydratase), and TECR (Q9NZ01 PTHR10556, GO:0102758 trans-2-enoyl-CoA reductase). Recurrent curation note: several reviews flag PMID:10970790 (HELO1 = the ELOVL5/ELOVL2 clone) as a WRONG_IDENTIFIER Reactome-EXP source though the elongase MF itself is correct. GO term ids/labels verified against the local go.db. Products feed sphingolipid/ceramide synthesis (curated modules), membrane phospholipids and skin/myelin/retina lipids. Disorders: ELOVL1 IKSHD; ELOVL4 Stargardt-like STGD3 / SCA34 / ISQMR; HACD1 congenital myopathy; TECR intellectual disability (MRT14).

Connections

condensation -> ketoreduction Provides Input For
The 3-oxoacyl-CoA made by the ELOVLs is reduced by HSD17B12.
ketoreduction -> dehydration Provides Input For
The (3R)-3-hydroxyacyl-CoA is dehydrated by HACD1/HACD2.
dehydration -> enoyl_reduction Provides Input For
The (2E)-enoyl-CoA is reduced by TECR.
enoyl_reduction -> condensation Provides Input For
The 2-carbon-elongated saturated acyl-CoA re-enters the ELOVL condensation step, iterating the cycle until the target chain length is reached.
Part 1: condensation (rate-limiting; substrate selectivity)
Fatty-acid elongases (ELOVL1-7)Reactioncondensation

Annotons

ELOVL1/2/3/4/6/7: fatty acid elongase (condensing enzyme)
elovl_activity
Participant: Family: ELOVL / ELO fatty-acid elongase family
Family:
ELOVL / ELO fatty-acid elongase familyPANTHER:PTHR11157
Representative Members: ELOVL1 (human; sat/monounsat C22->C26)UniProtKB:Q9BW60 ELOVL2 (human; C20/C22 PUFA)UniProtKB:Q9NXB9 ELOVL3 (human; sat/monounsat C16-C22)UniProtKB:Q9HB03 ELOVL4 (human; ultra-long-chain C26-C38)UniProtKB:Q9GZR5 ELOVL6 (human; C16->C18)UniProtKB:Q9H5J4 ELOVL7 (human; C18-C20)UniProtKB:A1L3X0

Function

fatty acid elongase activityGO:0009922
Substrates: acyl-CoA (chain-length/saturation per ELOVL isoform) malonyl-CoA
Products: 3-oxoacyl-CoA (2 carbons longer) CO2 + CoA

Locations

endoplasmic reticulum membraneGO:0005789

Condense acyl-CoA + malonyl-CoA to 3-oxoacyl-CoA (rate-limiting; sets specificity).

Part 2: 3-ketoacyl-CoA reduction
3-ketoacyl-CoA reductase (HSD17B12 / KAR)Reactionketoreduction

Annotons

HSD17B12: very-long-chain 3-oxoacyl-CoA reductase
hsd17b12_activity
Participant: Family: HSD17B12 / 3-ketoacyl-CoA reductase (SDR) family
Family:
HSD17B12 / 3-ketoacyl-CoA reductase (SDR) familyPANTHER:PTHR43899
Representative Members: HSD17B12 (human)UniProtKB:Q53GQ0

Function

very-long-chain 3-oxoacyl-CoA reductase activityGO:0141040
Substrates: 3-oxoacyl-CoA NADPH
Products: (3R)-3-hydroxyacyl-CoA NADP+

Locations

endoplasmic reticulum membraneGO:0005789

Reduce 3-oxoacyl-CoA to (3R)-3-hydroxyacyl-CoA (NADPH).

Part 3: 3-hydroxyacyl-CoA dehydration
3-hydroxyacyl-CoA dehydratase (HACD1/HACD2)Reactiondehydration

Annotons

HACD1/HACD2: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
hacd_activity
Participant: Family: HACD / 3-hydroxyacyl-CoA dehydratase family
Family:
HACD / 3-hydroxyacyl-CoA dehydratase familyPANTHER:PTHR11035
Representative Members: HACD1 (human; muscle-enriched)UniProtKB:B0YJ81 HACD2 (human; ubiquitous)UniProtKB:Q6Y1H2

Function

very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase activityGO:0102158
Substrates: (3R)-3-hydroxyacyl-CoA
Products: (2E)-enoyl-CoA H2O

Locations

endoplasmic reticulum membraneGO:0005789

Dehydrate (3R)-3-hydroxyacyl-CoA to (2E)-enoyl-CoA.

Part 4: trans-2-enoyl-CoA reduction (cycle completion)
trans-2-enoyl-CoA reductase (TECR)Reactionenoyl_reduction

Annotons

TECR: very-long-chain trans-2-enoyl-CoA reductase
tecr_activity
Participant: Family: TECR / trans-2-enoyl-CoA reductase family
Family:
TECR / trans-2-enoyl-CoA reductase familyPANTHER:PTHR10556
Representative Members: TECR (human)UniProtKB:Q9NZ01

Function

very-long-chain enoyl-CoA reductase activityGO:0102758
Substrates: (2E)-enoyl-CoA NADPH
Products: acyl-CoA (fully saturated, 2 carbons longer) NADP+

Locations

endoplasmic reticulum membraneGO:0005789

Reduce (2E)-enoyl-CoA to the elongated saturated acyl-CoA (NADPH; completes cycle).