Microsomal fatty-acid elongation cycle (ELOVL -> HSD17B12 -> HACD1/2 -> TECR)

Most fatty acids longer than the C16 palmitate made by cytosolic fatty-acid synthase are produced by the microsomal elongation system, a four-reaction cycle on the cytosolic face of the endoplasmic-reticulum membrane that adds two carbons per turn. Each round begins with the rate-limiting, substrate-selective condensation of an acyl-CoA with malonyl-CoA to a 3-oxoacyl-CoA (releasing CO2), catalysed by one of seven fatty-acid elongases (ELOVL1-7) whose chain-length and saturation preferences define which fatty acids a cell makes: ELOVL1/3/6 handle saturated and monounsaturated substrates (ELOVL6 the C16->C18 lipogenic step, ELOVL1 the C22->C26 very-long-chain step for sphingolipids/myelin, ELOVL3 skin/brown-fat lipids), ELOVL2/5 the C20/C22 polyunsaturated fatty acids en route to DHA, ELOVL7 C18-C20 substrates, and ELOVL4 the unique ultra-long-chain (C26-C38) fatty acids of retina, skin and brain. The 3-oxoacyl-CoA is then reduced by the NADPH-dependent 3-ketoacyl-CoA reductase HSD17B12 (KAR) to (3R)-3-hydroxyacyl-CoA, dehydrated by the 3-hydroxyacyl-CoA dehydratases HACD1/HACD2 to (2E)-enoyl-CoA, and reduced by the NADPH-dependent trans-2-enoyl-CoA reductase TECR to the two-carbon-extended saturated acyl-CoA, which re-enters the cycle. The reductase/dehydratase/reductase enzymes are shared across all ELOVLs; substrate specificity resides in the elongase. Inherited defects span the products: ELOVL1 (IKSHD ichthyosis/spastic quadriplegia), ELOVL4 (Stargardt-like macular dystrophy, SCA34, ichthyosis), HACD1 (congenital myopathy), TECR (intellectual disability), reflecting the roles of very-long-chain and ultra-long-chain fatty acids in skin barrier, myelin, retina and muscle.

MODULE:fatty_acid_elongation_cycleDRAFTMetabolic Pathwaymodules/fatty_acid_elongation_cycle.yaml
fatty acid elongationGO:0030497 very long-chain fatty acid biosynthetic processGO:0042761
GO:0030497
fatty acid elongation
ELOVLs, HSD17B12, HACD1/2 and TECR run the microsomal fatty-acid elongation cycle (GO:0030497).
GO:0042761
very long-chain fatty acid biosynthetic process
The cycle produces very-long-chain (and ultra-long-chain) fatty acids (GO:0042761).
file:human/ELOVL1/ELOVL1-ai-review.yaml
ELOVL1 gene review (human)
The condensation step (UniProtKB:Q9BW60, GO:0009922) matches the completed human ELOVL1 review.
file:human/ELOVL2/ELOVL2-ai-review.yaml
ELOVL2 gene review (human)
The PUFA condensation step (UniProtKB:Q9NXB9, GO:0009922) matches the completed human ELOVL2 review.
file:human/ELOVL3/ELOVL3-ai-review.yaml
ELOVL3 gene review (human)
The condensation step (UniProtKB:Q9HB03, GO:0009922) matches the completed human ELOVL3 review.
file:human/ELOVL4/ELOVL4-ai-review.yaml
ELOVL4 gene review (human)
The ultra-long-chain condensation step (UniProtKB:Q9GZR5, GO:0009922) matches the completed human ELOVL4 review.
file:human/ELOVL6/ELOVL6-ai-review.yaml
ELOVL6 gene review (human)
The C16->C18 condensation step (UniProtKB:Q9H5J4, GO:0009922) matches the completed human ELOVL6 review.
file:human/ELOVL7/ELOVL7-ai-review.yaml
ELOVL7 gene review (human)
The condensation step (UniProtKB:A1L3X0, GO:0009922) matches the completed human ELOVL7 review.
file:human/HSD17B12/HSD17B12-ai-review.yaml
HSD17B12 gene review (human)
The 3-ketoacyl-CoA reduction step (UniProtKB:Q53GQ0, GO:0141040) matches the completed human HSD17B12 review.
file:human/HACD1/HACD1-ai-review.yaml
HACD1 gene review (human)
The 3-hydroxyacyl-CoA dehydration step (UniProtKB:B0YJ81, GO:0102158) matches the completed human HACD1 review.
file:human/HACD2/HACD2-ai-review.yaml
HACD2 gene review (human)
The 3-hydroxyacyl-CoA dehydration step (UniProtKB:Q6Y1H2, GO:0102158) matches the completed human HACD2 review.
file:human/TECR/TECR-ai-review.yaml
TECR gene review (human)
The trans-2-enoyl-CoA reduction step (UniProtKB:Q9NZ01, GO:0102758) matches the completed human TECR review.
5Nodes
4Parts
0Variant Sets
0Variants
4Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:fatty_acid_elongation_cycle deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (10/10 grounded genes reviewed)

10 complete review(s) · 0 with deep research · 0 missing review · 10 reviewed but lacking deep research

Gene Review Complete Deep research
ELOVL1 Q9BW60
ELOVL2 Q9NXB9
ELOVL3 Q9HB03
ELOVL4 Q9GZR5
ELOVL6 Q9H5J4
ELOVL7 A1L3X0
HACD1 B0YJ81
HACD2 Q6Y1H2
HSD17B12 Q53GQ0
TECR Q9NZ01

Details

Context
endoplasmic reticulum membraneGO:0005789
Microsomal fatty-acid elongation cycleMetabolic Pathwayfatty_acid_elongation_cycle
fatty acid elongationGO:0030497 very long-chain fatty acid biosynthetic processGO:0042761
Context
endoplasmic reticulum membraneGO:0005789

Microsomal fatty-acid elongation cycle (GO:0030497 + GO:0042761), grounded to ten completed human gene reviews, all ER-membrane enzymes of the fatty acid elongase complex (GO:0009923). CONDENSATION (rate-limiting, substrate-selective): six of the seven ELOVLs reviewed here (ELOVL1 Q9BW60, ELOVL2 Q9NXB9, ELOVL3 Q9HB03, ELOVL4 Q9GZR5, ELOVL6 Q9H5J4, ELOVL7 A1L3X0) share PTHR11157 and all carry GO:0009922 fatty acid elongase activity (the single correct MF — no finer chain-length GO term exists; specificity noted per-gene: ELOVL6 C16->C18, ELOVL1 sat/monounsat VLCFA, ELOVL2 C20/C22 PUFA->DHA, ELOVL3 skin/brown-fat, ELOVL4 ultra-long-chain C26-C38, ELOVL7 C18-C20; ELOVL5 already reviewed earlier). The other three steps are SHARED across all ELOVLs: HSD17B12/KAR (Q53GQ0 PTHR43899, GO:0141040 3-oxoacyl-CoA reductase — its legacy 17-beta-HSD/estradiol activity is non-core), HACD1 (B0YJ81, muscle) + HACD2 (Q6Y1H2, ubiquitous) sharing PTHR11035 (GO:0102158 (3R)-3-hydroxyacyl-CoA dehydratase), and TECR (Q9NZ01 PTHR10556, GO:0102758 trans-2-enoyl-CoA reductase). Recurrent curation note: several reviews flag PMID:10970790 (HELO1 = the ELOVL5/ELOVL2 clone) as a WRONG_IDENTIFIER Reactome-EXP source though the elongase MF itself is correct. GO term ids/labels verified against the local go.db. Products feed sphingolipid/ceramide synthesis (curated modules), membrane phospholipids and skin/myelin/retina lipids. Disorders: ELOVL1 IKSHD; ELOVL4 Stargardt-like STGD3 / SCA34 / ISQMR; HACD1 congenital myopathy; TECR intellectual disability (MRT14).

Connections

condensation -> ketoreduction Provides Input For
The 3-oxoacyl-CoA made by the ELOVLs is reduced by HSD17B12.
ketoreduction -> dehydration Provides Input For
The (3R)-3-hydroxyacyl-CoA is dehydrated by HACD1/HACD2.
dehydration -> enoyl_reduction Provides Input For
The (2E)-enoyl-CoA is reduced by TECR.
enoyl_reduction -> condensation Provides Input For
The 2-carbon-elongated saturated acyl-CoA re-enters the ELOVL condensation step, iterating the cycle until the target chain length is reached.
Part 1: condensation (rate-limiting; substrate selectivity)
Fatty-acid elongases (ELOVL1-7)Reactioncondensation

Annotons

ELOVL1/2/3/4/6/7: fatty acid elongase (condensing enzyme)
elovl_activity
Participant: Family: ELOVL / ELO fatty-acid elongase family
Family:
ELOVL / ELO fatty-acid elongase familyPANTHER:PTHR11157
Representative Members: ELOVL1 (human; sat/monounsat C22->C26)UniProtKB:Q9BW60 ELOVL2 (human; C20/C22 PUFA)UniProtKB:Q9NXB9 ELOVL3 (human; sat/monounsat C16-C22)UniProtKB:Q9HB03 ELOVL4 (human; ultra-long-chain C26-C38)UniProtKB:Q9GZR5 ELOVL6 (human; C16->C18)UniProtKB:Q9H5J4 ELOVL7 (human; C18-C20)UniProtKB:A1L3X0

Function

fatty acid elongase activityGO:0009922
Substrates: acyl-CoA (chain-length/saturation per ELOVL isoform) malonyl-CoA
Products: 3-oxoacyl-CoA (2 carbons longer) CO2 + CoA

Locations

endoplasmic reticulum membraneGO:0005789

Condense acyl-CoA + malonyl-CoA to 3-oxoacyl-CoA (rate-limiting; sets specificity).

Part 2: 3-ketoacyl-CoA reduction
3-ketoacyl-CoA reductase (HSD17B12 / KAR)Reactionketoreduction

Annotons

HSD17B12: very-long-chain 3-oxoacyl-CoA reductase
hsd17b12_activity
Participant: Family: HSD17B12 / 3-ketoacyl-CoA reductase (SDR) family
Family:
HSD17B12 / 3-ketoacyl-CoA reductase (SDR) familyPANTHER:PTHR43899
Representative Members: HSD17B12 (human)UniProtKB:Q53GQ0

Function

very-long-chain 3-oxoacyl-CoA reductase activityGO:0141040
Substrates: 3-oxoacyl-CoA NADPH
Products: (3R)-3-hydroxyacyl-CoA NADP+

Locations

endoplasmic reticulum membraneGO:0005789

Reduce 3-oxoacyl-CoA to (3R)-3-hydroxyacyl-CoA (NADPH).

Part 3: 3-hydroxyacyl-CoA dehydration
3-hydroxyacyl-CoA dehydratase (HACD1/HACD2)Reactiondehydration

Annotons

HACD1/HACD2: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
hacd_activity
Participant: Family: HACD / 3-hydroxyacyl-CoA dehydratase family
Family:
HACD / 3-hydroxyacyl-CoA dehydratase familyPANTHER:PTHR11035
Representative Members: HACD1 (human; muscle-enriched)UniProtKB:B0YJ81 HACD2 (human; ubiquitous)UniProtKB:Q6Y1H2

Function

very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase activityGO:0102158
Substrates: (3R)-3-hydroxyacyl-CoA
Products: (2E)-enoyl-CoA H2O

Locations

endoplasmic reticulum membraneGO:0005789

Dehydrate (3R)-3-hydroxyacyl-CoA to (2E)-enoyl-CoA.

Part 4: trans-2-enoyl-CoA reduction (cycle completion)
trans-2-enoyl-CoA reductase (TECR)Reactionenoyl_reduction

Annotons

TECR: very-long-chain trans-2-enoyl-CoA reductase
tecr_activity
Participant: Family: TECR / trans-2-enoyl-CoA reductase family
Family:
TECR / trans-2-enoyl-CoA reductase familyPANTHER:PTHR10556
Representative Members: TECR (human)UniProtKB:Q9NZ01

Function

very-long-chain enoyl-CoA reductase activityGO:0102758
Substrates: (2E)-enoyl-CoA NADPH
Products: acyl-CoA (fully saturated, 2 carbons longer) NADP+

Locations

endoplasmic reticulum membraneGO:0005789

Reduce (2E)-enoyl-CoA to the elongated saturated acyl-CoA (NADPH; completes cycle).