Gluconeogenesis (human) with precursor-entry routes
Extension of the human gluconeogenesis module that makes the choice of non-carbohydrate precursor explicit. The three physiological precursors enter the pathway at different points: lactate (via lactate dehydrogenase) and the glucogenic amino acid alanine (via alanine aminotransferase) are converted to pyruvate and so require the pyruvate carboxylase / phosphoenolpyruvate carboxykinase backbone, whereas glycerol enters lower down — glycerol kinase and cytosolic glycerol-3-phosphate dehydrogenase feed dihydroxyacetone phosphate directly into the triose-phosphate pool, bypassing pyruvate carboxylase and PEPCK entirely. All routes converge on the shared fructose-1,6-bisphosphatase step and the terminal endoplasmic-reticulum glucose-6-phosphatase system (G6PC1 plus the SLC37A4 antiporter). Because glycerol bypasses the carboxylation arm, pyruvate carboxylase is no longer required by every route: the only steps common to all precursor routes are the terminal G6PC1·SLC37A4 system, which is therefore the single universal gate of free-glucose output. The module is built to be evaluated against tissue expression so that, per tissue, one can ask not just whether gluconeogenesis is possible but which precursors a tissue is equipped to use.
Derived QC
Recommended-field compliance
All recommended fields populated.
Module deep research
✗ none found
No MODULE:gluconeogenesis_human_substrates deep-research report alongside the module YAML.
Leaf nodes lacking representative members
✓ every leaf node grounds to a representative protein.
Template conformance
✓ every declared conforms_to bundle matches its template motif.
Gene-review completeness (0/13 grounded genes reviewed)
0 complete review(s) · 0 with deep research · 13 missing review · 0 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| FBP2 (muscle fructose-1,6-bisphosphatase) O00757 | ✗ | — | — |
| SLC37A4 (glucose-6-phosphate transporter) O43826 | ✗ | — | — |
| LDHA (L-lactate dehydrogenase A) P00338 | ✗ | — | — |
| LDHB (L-lactate dehydrogenase B) P07195 | ✗ | — | — |
| FBP1 (liver fructose-1,6-bisphosphatase) P09467 | ✗ | — | — |
| PC (pyruvate carboxylase) P11498 | ✗ | — | — |
| GPD1 (glycerol-3-phosphate dehydrogenase) P21695 | ✗ | — | — |
| GPT (alanine aminotransferase 1) P24298 | ✗ | — | — |
| GK (glycerol kinase) P32189 | ✗ | — | — |
| PCK1 (cytosolic PEPCK) P35558 | ✗ | — | — |
| G6PC1 (glucose-6-phosphatase catalytic subunit 1) P35575 | ✗ | — | — |
| PCK2 (mitochondrial PEPCK) Q16822 | ✗ | — | — |
| GPT2 (alanine aminotransferase 2) Q8TD30 | ✗ | — | — |
Details
Precursor-resolved extension of gluconeogenesis_human.yaml. All UniProt and GO ids verified. Glycerol entry bypasses PC/PEPCK, so the only steps shared by all precursor routes are the terminal G6PC1·SLC37A4 system (the universal gate). See modules/experimental/gluconeogenesis-context/resolve_substrates.py for the per-tissue "which precursors can this tissue use?" resolution against GTEx.
Requires the carboxylation backbone (PC then PEPCK).
Annotons
Annotons
Function
Locations
Annotons
Function
Locations
Annotons
Function
Annotons
Function
Locations
Annotons
Function
Locations
Annotons
Function
Locations
Glycerol enters at dihydroxyacetone phosphate via glycerol kinase and cytosolic glycerol-3-phosphate dehydrogenase, downstream of the carboxylation arm, so it needs neither PC nor PEPCK.
Annotons
Function
Locations
Annotons
Function
Locations
Annotons
Function
Locations
Annotons
Function
The two-component ER system required by every precursor route, and hence the single universal gate of free-glucose output.