Glutamate / glutamine / ammonia metabolic hub (GLUL, GLS/GLS2, GLUD1/GLUD2)

Glutamate, glutamine and ammonia sit at the crossroads of amino-acid, nitrogen and carbon metabolism, and three enzyme activities interconvert them. Glutamine synthetase (GLUL) is the sole route of net ammonia fixation into organic form: it condenses L-glutamate + ammonia + ATP to L-glutamine, the body's principal non-toxic nitrogen carrier and a nitrogen donor for nucleotide, amino-sugar and amino-acid synthesis; it detoxifies ammonia in perivenous hepatocytes, astrocytes and muscle. Running the opposite direction, the phosphate-activated mitochondrial glutaminases GLS (kidney-type, KGA/GAC) and GLS2 (liver-type, LGA/GAB) hydrolyse L-glutamine back to L-glutamate + ammonia, initiating glutaminolysis and supplying glutamate for the astrocytic glutamate-glutamine cycle, renal ammoniagenesis and cancer glutamine addiction. Glutamate is then reversibly deaminated by mitochondrial glutamate dehydrogenase — the ubiquitous GLUD1 and the hominoid-specific, brain/testis GLUD2 — to 2-oxoglutarate (alpha-ketoglutarate) + ammonia with NAD(P)+, linking amino-acid nitrogen to the TCA cycle for energy and anaplerosis and, in pancreatic beta-cells, coupling amino-acid sensing to insulin secretion. Together GLUL and GLS establish the glutamate<->glutamine interconversion cycle, while GLUD channels glutamate carbon into the TCA cycle and releases its nitrogen as ammonia (destined for the urea cycle). Inherited defects highlight the hub's importance: GLUL deficiency (congenital glutamine deficiency / neonatal encephalopathy), GLS deficiency (epileptic encephalopathy) and gain-of-function (developmental delay), and GLUD1 activating mutations (the hyperinsulinism-hyperammonemia syndrome).

MODULE:glutamate_glutamine_ammonia_hubDRAFTMetabolic Pathwaymodules/glutamate_glutamine_ammonia_hub.yaml
L-glutamine biosynthetic processGO:1901704 L-glutamine metabolic processGO:0006541
GO:1901704
L-glutamine biosynthetic process
GLUL fixes ammonia into L-glutamine (GO:1901704).
GO:0006543
L-glutamine catabolic process
GLS/GLS2 hydrolyse L-glutamine to glutamate + ammonia (GO:0006543).
GO:0006538
L-glutamate catabolic process
GLUD1/GLUD2 deaminate L-glutamate to 2-oxoglutarate + ammonia (GO:0006538).
file:human/GLUL/GLUL-ai-review.yaml
GLUL gene review (human)
The glutamate + NH3 + ATP -> glutamine step (UniProtKB:P15104, GO:0004356) matches the completed human GLUL review.
file:human/GLS/GLS-ai-review.yaml
GLS gene review (human)
The glutamine -> glutamate + NH3 step (UniProtKB:O94925, GO:0004359) matches the completed human GLS review.
file:human/GLS2/GLS2-ai-review.yaml
GLS2 gene review (human)
The liver-type glutamine -> glutamate + NH3 step (UniProtKB:Q9UI32, GO:0004359) matches the completed human GLS2 review.
file:human/GLUD1/GLUD1-ai-review.yaml
GLUD1 gene review (human)
The glutamate <-> 2-oxoglutarate + NH3 deamination step (UniProtKB:P00367, GO:0004353) matches the completed human GLUD1 review.
file:human/GLUD2/GLUD2-ai-review.yaml
GLUD2 gene review (human)
The brain/testis glutamate dehydrogenase step (UniProtKB:P49448, GO:0004353) matches the completed human GLUD2 review.
4Nodes
3Parts
0Variant Sets
0Variants
3Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:glutamate_glutamine_ammonia_hub deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (5/5 grounded genes reviewed)

5 complete review(s) · 0 with deep research · 0 missing review · 5 reviewed but lacking deep research

Gene Review Complete Deep research
GLS O94925
GLS2 Q9UI32
GLUD1 P00367
GLUD2 P49448
GLUL P15104

Details

Context
cytosolGO:0005829 mitochondrial matrixGO:0005759
Glutamate / glutamine / ammonia metabolic hubMetabolic Pathwayglutamate_glutamine_ammonia_hub
L-glutamine biosynthetic processGO:1901704 L-glutamine metabolic processGO:0006541
Context
cytosolGO:0005829 mitochondrial matrixGO:0005759

Glutamate/glutamine/ammonia metabolic hub (GO:1901704 + GO:0006541), grounded to five completed human gene reviews. AMMONIA FIXATION: GLUL (P15104 PTHR20852, GO:0004356 glutamine synthetase, cytosolic, ATP-dependent; congenital glutamine deficiency; NB GO:0006542 glutamine-biosynthetic is OBSOLETE -> GO:1901704). GLUTAMINOLYSIS: GLS (O94925, kidney-type/GAC, cancer target) + GLS2 (Q9UI32, liver-type, p53-induced antioxidant) share PTHR12544, GO:0004359 glutaminase, mitochondrial (GO:0006537 glutamate-biosynthetic is OBSOLETE -> GO:0097054). GLUTAMATE DEAMINATION: GLUD1 (P00367, ubiquitous) + GLUD2 (P49448, hominoid retrogene, brain/testis, GTP- insensitive/ADP-activated) share PTHR11606, GO:0004353 L-glutamate dehydrogenase [NAD(P)+] (children GO:0004352 NAD+/GO:0004354 NADP+) + ADP binding GO:0043531; GLUD1 activating mutations = hyperinsulinism-hyperammonemia. The three reactions form a cycle: GLUL fixes NH3 into glutamine, GLS releases it back to glutamate+NH3, GLUD channels glutamate to 2-oxoglutarate (TCA/anaplerosis) releasing NH3 to the urea cycle; GLUD reverse-direction regenerates glutamate. Moonlighting kept non-core in gene reviews (GLUL protein-palmitoyltransferase; GLS2 p53/ apoptosis/ROS). Links to urea cycle (ammonia), TCA cycle (2-oxoglutarate) and transaminases (curated separately). GO term ids/labels verified against the local go.db. Disorders: GLUL congenital glutamine deficiency; GLS deficiency/gain-of-function; GLUD1 hyperinsulinism-hyperammonemia.

Connections

The L-glutamine made by GLUL is the substrate hydrolysed by the glutaminases GLS/GLS2 — the two form the glutamate<->glutamine interconversion cycle (e.g. the astrocytic glutamate-glutamine cycle).
The L-glutamate released by the glutaminases is deaminated by GLUD1/GLUD2 to 2-oxoglutarate.
GLUD runs reversibly: reductive amination of 2-oxoglutarate regenerates glutamate (the GLUL substrate), and the ammonia released by glutaminase/GLUD can be re-fixed by GLUL, closing the hub.
Part 1: ammonia fixation (glutamate + NH3 -> glutamine)
Glutamine synthetase (GLUL)Reactionglutamine_synthesis

Annotons

GLUL: glutamate-ammonia ligase
glul_activity
Participant: Family: GLUL / glutamine synthetase family
Family:
GLUL / glutamine synthetase familyPANTHER:PTHR20852
Representative Members: GLUL (human)UniProtKB:P15104

Function

glutamine synthetase activityGO:0004356
Substrates: L-glutamate ammonia (NH3/NH4+) ATP (Mg2+/Mn2+)
Products: L-glutamine ADP + phosphate

Locations

cytosolGO:0005829

Fix ammonia into L-glutamine (glutamate + NH3 + ATP).

Part 2: glutaminolysis (glutamine -> glutamate + NH3)
Glutaminases (GLS / GLS2)Reactionglutamine_hydrolysis

Annotons

GLS/GLS2: phosphate-activated glutaminase
gls_activity
Participant: Family: GLS / glutaminase family
Family:
GLS / glutaminase familyPANTHER:PTHR12544
Representative Members: GLS (human; kidney-type KGA/GAC)UniProtKB:O94925 GLS2 (human; liver-type LGA/GAB, p53 target)UniProtKB:Q9UI32

Function

glutaminase activityGO:0004359
Substrates: L-glutamine H2O (phosphate-activated)
Products: L-glutamate ammonia (NH3/NH4+)

Locations

mitochondrial matrixGO:0005759

Hydrolyse L-glutamine to L-glutamate + ammonia (glutaminolysis).

Part 3: glutamate deamination to 2-oxoglutarate (TCA link)
Glutamate dehydrogenases (GLUD1 / GLUD2)Reactionglutamate_deamination

Annotons

GLUD1/GLUD2: glutamate dehydrogenase [NAD(P)+]
glud_activity
Participant: Family: GLUD / glutamate dehydrogenase family
Family:
GLUD / glutamate dehydrogenase familyPANTHER:PTHR11606
Representative Members: GLUD1 (human; ubiquitous)UniProtKB:P00367 GLUD2 (human; brain/testis, hominoid retrogene)UniProtKB:P49448

Function

L-glutamate dehydrogenase [NAD(P)+] activityGO:0004353
Substrates: L-glutamate NAD+ or NADP+ (H2O; ADP/leucine-activated, GTP-inhibited)
Products: 2-oxoglutarate (alpha-ketoglutarate) ammonia + NAD(P)H

Locations

mitochondrial matrixGO:0005759

Deaminate L-glutamate to 2-oxoglutarate + ammonia (NAD(P)+; feeds TCA cycle).