Glycogenolysis (glycogen breakdown to glucose-1/6-phosphate) — GSD III/V/VI, PGM1-CDG

Glycogenolysis is the cytosolic breakdown of stored glycogen to release glucose units for glycolysis (muscle) or blood-glucose maintenance (liver). Glycogen phosphorylase (the rate-limiting, PLP-dependent enzyme; muscle PYGM, liver PYGL, brain PYGB isoforms) sequentially phosphorolyses the alpha-1,4-glycosidic bonds at the non-reducing ends of glycogen, releasing glucose-1-phosphate, until it stalls about four glucose residues from an alpha-1,6 branch point (leaving a "limit dextrin"). The bifunctional glycogen debranching enzyme (AGL) then remodels the branch: its 4-alpha-glucanotransferase activity transfers a maltotriosyl unit to a nearby chain, exposing the single alpha-1,6-linked glucose, which its amylo-alpha-1,6-glucosidase activity hydrolyses to free glucose — restoring a linear chain that phosphorylase can continue to degrade. Finally phosphoglucomutase (PGM1) reversibly isomerises the glucose-1-phosphate to glucose-6-phosphate (via a glucose-1,6-bisphosphate intermediate, Mg2+-dependent), which enters glycolysis or, in liver/kidney, is dephosphorylated by the glucose-6-phosphatase system for export as free glucose. Inherited defects define glycogen storage diseases: PYGM deficiency causes GSD V (McArdle disease, exercise intolerance/myoglobinuria); PYGL deficiency GSD VI (Hers disease, hepatomegaly/hypoglycemia); AGL deficiency GSD III (Cori/Forbes disease, with abnormal limit-dextrin-like glycogen); and PGM1 deficiency PGM1-CDG (a mixed glycogenosis and congenital disorder of glycosylation).

MODULE:glycogenolysisDRAFTMetabolic Pathwaymodules/glycogenolysis.yaml
glycogen catabolic processGO:0005980
GO:0005980
glycogen catabolic process
The module is grounded in the GO glycogen catabolic process (GO:0005980): phosphorolysis (PYGL/PYGM), debranching (AGL) and G1P/G6P isomerisation (PGM1).
Reactome:R-HSA-70221
Glycogen breakdown (glycogenolysis)
Step order and reaction stoichiometries follow the human Reactome "Glycogen breakdown (glycogenolysis)" pathway (R-HSA-70221): phosphorolysis (R-HSA-71590), debranching (R-HSA-71552 transferase, R-HSA-71593 glucosidase) and PGM1 isomerisation (R-HSA-9638125).
file:human/PYGL/PYGL-ai-review.yaml
PYGL gene review (human)
The liver glycogen-phosphorylase step (UniProtKB:P06737, GO:0008184) matches the completed human PYGL review.
file:human/PYGM/PYGM-ai-review.yaml
PYGM gene review (human)
The muscle glycogen-phosphorylase step (UniProtKB:P11217, GO:0008184) matches the completed human PYGM review.
file:human/AGL/AGL-ai-review.yaml
AGL gene review (human)
The bifunctional debranching step (UniProtKB:P35573, GO:0004134 + GO:0004135) matches the completed human AGL review.
file:human/PGM1/PGM1-ai-review.yaml
PGM1 gene review (human)
The glucose-1-phosphate to glucose-6-phosphate isomerisation step (UniProtKB:P36871, GO:0004614) matches the completed human PGM1 review.
4Nodes
3Parts
0Variant Sets
0Variants
3Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:glycogenolysis deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (4/4 grounded genes reviewed)

4 complete review(s) · 0 with deep research · 0 missing review · 4 reviewed but lacking deep research

Gene Review Complete Deep research
AGL P35573
PGM1 P36871
PYGL P06737
PYGM P11217

Details

Context
cytosolGO:0005829
Glycogenolysis (glycogen breakdown)Metabolic Pathwayglycogenolysis
glycogen catabolic processGO:0005980
Context
cytosolGO:0005829

Three-step cytosolic glycogenolysis grounded to the human enzymes glycogen phosphorylase (PYGL, UniProtKB:P06737 / PYGM, P11217; GO:0008184, EC 2.4.1.1), the bifunctional debranching enzyme AGL (P35573; GO:0004134 + GO:0004135, EC 2.4.1.25 / 3.2.1.33) and phosphoglucomutase PGM1 (P36871; GO:0004614, EC 5.4.2.2). GO molecular-function terms were taken from the human GOA records; Reactome reaction ids and titles were verified against the local reactome cache. The phosphorylase step uses a PANTHER family selector (PTHR11468) generic over the three human isoforms PYGL/PYGM/PYGB and their orthologs, with PYGL and PYGM as representative members; AGL and PGM1 likewise use family selectors plus a human representative. Downstream, glucose-6-phosphate enters glycolysis or, in liver and kidney, is dephosphorylated by the glucose-6-phosphatase system (G6PC1 + SLC37A4) for export as free glucose (not yet reviewed). Phosphorylase-kinase activation of phosphorylase (the PHK complex; GSD IX) and glycogen synthesis are out of scope for this degradation module. PGM1 runs reversibly and also serves glycogen synthesis and the galactose Leloir pathway (its non-glycogenolytic roles are captured in the PGM1 gene review). Disorders: PYGM -> GSD V (McArdle); PYGL -> GSD VI (Hers); AGL -> GSD III (Cori/Forbes); PGM1 -> PGM1-CDG.

Connections

phosphorylase_step -> debranching_step Provides Input For
Phosphorylase stalls ~4 residues from a branch, producing the limit dextrin that AGL debranches.
debranching_step -> phosphorylase_step Provides Input For
AGL restores a linear alpha-1,4 chain, allowing phosphorylase to resume phosphorolysis (the phosphorylase/debranching cycle).
phosphorylase_step -> pgm1_step Provides Input For
The glucose-1-phosphate released by phosphorylase is isomerised to glucose-6-phosphate by PGM1.
Part 1: phosphorolysis of the alpha-1,4 chains (rate-limiting)
glycogen(n) + phosphate to glucose-1-phosphate + glycogen(n-1) / limit dextrinReactionphosphorylase_step

Annotons

PYGL/PYGM/PYGB: glycogen phosphorylase
phosphorylase_activity
Participant: Family: Glycogen phosphorylase family (PYGL/PYGM/PYGB)
Family:
Glycogen phosphorylase family (PYGL/PYGM/PYGB)PANTHER:PTHR11468
Representative Members: PYGL (human, liver isoform)UniProtKB:P06737 PYGM (human, muscle isoform)UniProtKB:P11217

Function

glycogen phosphorylase activityGO:0008184
Substrates: glycogen (alpha-1,4 non-reducing ends) phosphate
Products: alpha-D-glucose 1-phosphate glycogen(n-1) / limit dextrin

Locations

cytosolGO:0005829

Rate-limiting, PLP-dependent homodimeric phosphorylase releasing glucose-1-phosphate from glycogen non-reducing ends until ~4 residues from an alpha-1,6 branch (allosterically activated by AMP; covalently activated b->a by phosphorylase kinase). Tissue isoforms: PYGM (muscle, GSD V/McArdle), PYGL (liver, GSD VI/Hers), PYGB (brain).

Part 2: debranching of the alpha-1,6 branch points
limit dextrin to linear glycogen + free glucose (transferase + glucosidase)Reactiondebranching_step

Annotons

AGL: glycogen debranching enzyme (bifunctional)
agl_activity
Participant: Family: Glycogen debranching enzyme family (AGL)
Family:
Glycogen debranching enzyme family (AGL)PANTHER:PTHR10569
Representative Members: AGL (human)UniProtKB:P35573

Function

amylo-alpha-1,6-glucosidase activityGO:0004135
Substrates: limit dextrin (alpha-1,6-branched) water
Products: linear alpha-1,4-glucan free D-glucose

Locations

cytosolGO:0005829

Single-polypeptide bifunctional enzyme with two activities: a 4-alpha-glucanotransferase (GO:0004134) that transfers a maltotriosyl unit to expose the alpha-1,6-linked glucose, and an amylo-alpha-1,6-glucosidase (GO:0004135) that hydrolyses it to free glucose, regenerating a linear chain for continued phosphorolysis. Deficiency causes GSD III (Cori/Forbes disease).

Part 3: isomerisation into the hexose-phosphate pool
glucose-1-phosphate to glucose-6-phosphateReactionpgm1_step

Annotons

PGM1: phosphoglucomutase-1
pgm1_activity
Participant: Family: Phosphoglucomutase / phosphohexomutase family (PGM1)
Family:
Phosphoglucomutase / phosphohexomutase family (PGM1)PANTHER:PTHR22573
Representative Members: PGM1 (human)UniProtKB:P36871

Function

phosphoglucomutase activityGO:0004614
Substrates: alpha-D-glucose 1-phosphate
Products: alpha-D-glucose 6-phosphate

Locations

cytosolGO:0005829

Mg2+-dependent mutase interconverting glucose-1-phosphate and glucose-6-phosphate at the junction of glycogen metabolism and glycolysis/gluconeogenesis. In glycogenolysis it converts the G1P from phosphorylase into G6P; deficiency causes PGM1-CDG.