Glycogenolysis (glycogen breakdown)Metabolic Pathwayglycogenolysis
Three-step cytosolic glycogenolysis grounded to the human enzymes glycogen phosphorylase (PYGL, UniProtKB:P06737 / PYGM, P11217; GO:0008184, EC 2.4.1.1), the bifunctional debranching enzyme AGL (P35573; GO:0004134 + GO:0004135, EC 2.4.1.25 / 3.2.1.33) and phosphoglucomutase PGM1 (P36871; GO:0004614, EC 5.4.2.2). GO molecular-function terms were taken from the human GOA records; Reactome reaction ids and titles were verified against the local reactome cache. The phosphorylase step uses a PANTHER family selector (PTHR11468) generic over the three human isoforms PYGL/PYGM/PYGB and their orthologs, with PYGL and PYGM as representative members; AGL and PGM1 likewise use family selectors plus a human representative. Downstream, glucose-6-phosphate enters glycolysis or, in liver and kidney, is dephosphorylated by the glucose-6-phosphatase system (G6PC1 + SLC37A4) for export as free glucose (not yet reviewed). Phosphorylase-kinase activation of phosphorylase (the PHK complex; GSD IX) and glycogen synthesis are out of scope for this degradation module. PGM1 runs reversibly and also serves glycogen synthesis and the galactose Leloir pathway (its non-glycogenolytic roles are captured in the PGM1 gene review). Disorders: PYGM -> GSD V (McArdle); PYGL -> GSD VI (Hers); AGL -> GSD III (Cori/Forbes); PGM1 -> PGM1-CDG.
Connections
Phosphorylase stalls ~4 residues from a branch, producing the limit dextrin that AGL debranches.
AGL restores a linear alpha-1,4 chain, allowing phosphorylase to resume phosphorolysis (the phosphorylase/debranching cycle).
The glucose-1-phosphate released by phosphorylase is isomerised to glucose-6-phosphate by PGM1.
Part 1: phosphorolysis of the alpha-1,4 chains (rate-limiting)
glycogen(n) + phosphate to glucose-1-phosphate + glycogen(n-1) / limit dextrinReactionphosphorylase_step
Annotons
PYGL/PYGM/PYGB: glycogen phosphorylase
phosphorylase_activity
Participant: Family: Glycogen phosphorylase family (PYGL/PYGM/PYGB)
Function
glycogen phosphorylase activityGO:0008184
Substrates:
glycogen (alpha-1,4 non-reducing ends)
phosphate
Products:
alpha-D-glucose 1-phosphate
glycogen(n-1) / limit dextrin
Locations
Rate-limiting, PLP-dependent homodimeric phosphorylase releasing glucose-1-phosphate from glycogen non-reducing ends until ~4 residues from an alpha-1,6 branch (allosterically activated by AMP; covalently activated b->a by phosphorylase kinase). Tissue isoforms: PYGM (muscle, GSD V/McArdle), PYGL (liver, GSD VI/Hers), PYGB (brain).
Part 2: debranching of the alpha-1,6 branch points
limit dextrin to linear glycogen + free glucose (transferase + glucosidase)Reactiondebranching_step
Annotons
AGL: glycogen debranching enzyme (bifunctional)
agl_activity
Participant: Family: Glycogen debranching enzyme family (AGL)
Function
amylo-alpha-1,6-glucosidase activityGO:0004135
Substrates:
limit dextrin (alpha-1,6-branched)
water
Products:
linear alpha-1,4-glucan
free D-glucose
Locations
Single-polypeptide bifunctional enzyme with two activities: a 4-alpha-glucanotransferase (GO:0004134) that transfers a maltotriosyl unit to expose the alpha-1,6-linked glucose, and an amylo-alpha-1,6-glucosidase (GO:0004135) that hydrolyses it to free glucose, regenerating a linear chain for continued phosphorolysis. Deficiency causes GSD III (Cori/Forbes disease).
Part 3: isomerisation into the hexose-phosphate pool
glucose-1-phosphate to glucose-6-phosphateReactionpgm1_step
Annotons
PGM1: phosphoglucomutase-1
pgm1_activity
Participant: Family: Phosphoglucomutase / phosphohexomutase family (PGM1)
Function
phosphoglucomutase activityGO:0004614
Substrates:
alpha-D-glucose 1-phosphate
Products:
alpha-D-glucose 6-phosphate
Locations
Mg2+-dependent mutase interconverting glucose-1-phosphate and glucose-6-phosphate at the junction of glycogen metabolism and glycolysis/gluconeogenesis. In glycogenolysis it converts the G1P from phosphorylase into G6P; deficiency causes PGM1-CDG.