Glycosphingolipid biosynthesis (ceramide -> GlcCer/GalCer -> LacCer -> ganglio/globo/lacto series)

Glycosphingolipids are ceramide-anchored glycans that cover the outer leaflet of the plasma membrane, clustering in lipid rafts and serving as blood-group antigens, cell-adhesion and signalling receptors, and receptors hijacked by toxins and pathogens. Their synthesis is a Golgi-based branching tree built on ceramide. Two committed glycosylations start the two major limbs: glucosylceramide synthase UGCG adds glucose to ceramide (glucosylceramide, GlcCer, the trunk of the ganglio/globo/lacto glycosphingolipids), while UGT8 in the ER adds galactose to make galactosylceramide (GalCer, precursor of the myelin galactolipids and sulfatide). GlcCer is galactosylated by the beta-1,4-galactosyltransferases B4GALT5 (major) and B4GALT6 to lactosylceramide (LacCer), the central branch point. From LacCer three series diverge: the GANGLIO series begins when the sialyltransferase ST3GAL5 (GM3 synthase) adds sialic acid to make GM3, which ST8SIA1 (GD3 synthase) can further sialylate to GD3, and which B4GALNT1 (GM2/GD2 synthase) elongates with GalNAc toward the complex a-/b-series gangliosides; the GLOBO series begins when A4GALT (Gb3/CD77 synthase) adds an alpha-galactose to make globotriaosylceramide (Gb3, the Shiga-toxin receptor and Pk antigen), which B3GALNT1 (globoside synthase) extends to globoside (Gb4, the P antigen); and the (neo)LACTO series begins when B3GNT5 adds GlcNAc to make lactotriaosylceramide (Lc3), the scaffold for Lewis/blood-group glycans. Inherited defects at almost every node cause disease: UGCG is the drug target for glycosphingolipidoses, ST3GAL5 deficiency causes GM3-synthase-deficiency epileptic encephalopathy, B4GALNT1 deficiency causes hereditary spastic paraplegia (SPG26), and A4GALT/B3GALNT1 variants define the P blood-group system.

MODULE:glycosphingolipid_biosynthesisDRAFTMetabolic Pathwaymodules/glycosphingolipid_biosynthesis.yaml
glycosphingolipid biosynthetic processGO:0006688 ganglioside biosynthetic processGO:0001574
GO:0006688
glycosphingolipid biosynthetic process
UGCG/B4GALT5/6 and the series-specific glycosyltransferases build glycosphingolipids (GO:0006688).
GO:0001574
ganglioside biosynthetic process
ST3GAL5, ST8SIA1 and B4GALNT1 build the sialylated ganglio-series (GO:0001574).
file:human/UGCG/UGCG-ai-review.yaml
UGCG gene review (human)
The ceramide -> glucosylceramide step (UniProtKB:Q16739, GO:0008120) matches the completed human UGCG review.
file:human/UGT8/UGT8-ai-review.yaml
UGT8 gene review (human)
The ceramide -> galactosylceramide step (UniProtKB:Q16880, GO:0003851) matches the completed human UGT8 review.
file:human/B4GALT5/B4GALT5-ai-review.yaml
B4GALT5 gene review (human)
The GlcCer -> lactosylceramide step (UniProtKB:O43286, GO:0008489) matches the completed human B4GALT5 review.
file:human/B4GALT6/B4GALT6-ai-review.yaml
B4GALT6 gene review (human)
The GlcCer -> lactosylceramide step (UniProtKB:Q9UBX8, GO:0008489) matches the completed human B4GALT6 review.
file:human/ST3GAL5/ST3GAL5-ai-review.yaml
ST3GAL5 gene review (human)
The LacCer -> GM3 (ganglio-series start) step (UniProtKB:Q9UNP4, GO:0047291) matches the completed human ST3GAL5 review.
file:human/ST8SIA1/ST8SIA1-ai-review.yaml
ST8SIA1 gene review (human)
The GM3 -> GD3 (b-series) step (UniProtKB:Q92185, GO:0003828) matches the completed human ST8SIA1 review.
file:human/B4GALNT1/B4GALNT1-ai-review.yaml
B4GALNT1 gene review (human)
The GM3/GD3 -> GM2/GD2 step (UniProtKB:Q00973, GO:0003947) matches the completed human B4GALNT1 review.
file:human/A4GALT/A4GALT-ai-review.yaml
A4GALT gene review (human)
The LacCer -> Gb3 (globo-series start) step (UniProtKB:Q9NPC4, GO:0050512) matches the completed human A4GALT review.
file:human/B3GALNT1/B3GALNT1-ai-review.yaml
B3GALNT1 gene review (human)
The Gb3 -> globoside (Gb4) step (UniProtKB:O75752, GO:0047273) matches the completed human B3GALNT1 review.
file:human/B3GNT5/B3GNT5-ai-review.yaml
B3GNT5 gene review (human)
The LacCer -> Lc3 ((neo)lacto-series start) step (UniProtKB:Q9BYG0, GO:0047256) matches the completed human B3GNT5 review.
10Nodes
9Parts
0Variant Sets
0Variants
9Annotons
8Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:glycosphingolipid_biosynthesis deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (10/10 grounded genes reviewed)

10 complete review(s) · 0 with deep research · 0 missing review · 10 reviewed but lacking deep research

Gene Review Complete Deep research
A4GALT Q9NPC4
B3GALNT1 O75752
B3GNT5 Q9BYG0
B4GALNT1 Q00973
B4GALT5 O43286
B4GALT6 Q9UBX8
ST3GAL5 Q9UNP4
ST8SIA1 Q92185
UGCG Q16739
UGT8 Q16880

Details

Context
Golgi membraneGO:0000139 endoplasmic reticulum membraneGO:0005789
Glycosphingolipid biosynthesisMetabolic Pathwayglycosphingolipid_biosynthesis
glycosphingolipid biosynthetic processGO:0006688 ganglioside biosynthetic processGO:0001574
Context
Golgi membraneGO:0000139 endoplasmic reticulum membraneGO:0005789

Glycosphingolipid biosynthesis (GO:0006688 + GO:0001574), grounded to ten completed human gene reviews, all Golgi-membrane glycosyltransferases except the ER galactosyltransferase UGT8. TRUNK: UGCG (Q16739 PTHR12726, GO:0008120 ceramide->GlcCer; eliglustat drug target) -> B4GALT5 (O43286, major) + B4GALT6 (Q9UBX8) share PTHR19300, GO:0008489 GlcCer->LacCer (branch point). PARALLEL: UGT8 (Q16880 PTHR48043, GO:0003851 ceramide->GalCer, ER; myelin/sulfatide branch — note GO:0008489 is the LacCer-synthase reaction, NOT UGT8's, corrected in that review). From LacCer, THREE series: GANGLIO — ST3GAL5 (Q9UNP4 PTHR13713, GO:0047291 GM3 synthase; GM3-synthase-deficiency epilepsy) -> ST8SIA1 (Q92185 PTHR11987, GO:0003828 GD3 synthase, b-series) and B4GALNT1 (Q00973 PTHR15046, GO:0003947 GM2/GD2 synthase; SPG26); GLOBO — A4GALT (Q9NPC4 PTHR12042, GO:0050512 Gb3/CD77 synthase, Shiga-toxin receptor/Pk) -> B3GALNT1 (O75752 PTHR11214, GO:0047273 globoside/Gb4 synthase, P antigen); (neo)LACTO — B3GNT5 (Q9BYG0, same PTHR11214, GO:0047256 Lc3 synthase). Recurrent curation catch: these are glycoLIPID transferases, so InterPro2GO glycoPROTEIN- biosynthesis IEAs were over-annotated/removed. Downstream sialic-acid donors come from the sialic-acid module; degradation is the (separate) lysosomal glycosphingolipid-degradation module. GO term ids/labels verified against the local go.db. Disorders: ST3GAL5 & B4GALNT1 (neuro), A4GALT/B3GALNT1 (P blood group).

Connections

The GlcCer made by UGCG is galactosylated to LacCer by B4GALT5/6.
LacCer is sialylated by ST3GAL5 to enter the ganglio-series (GM3).
lactosylceramide_synthesis -> globo_gb3 Provides Input For
LacCer is alpha-galactosylated by A4GALT to enter the globo-series (Gb3).
lactosylceramide_synthesis -> lacto_lc3 Provides Input For
LacCer is GlcNAc-extended by B3GNT5 to enter the (neo)lacto-series (Lc3).
ganglio_gm3 -> ganglio_gd3 Provides Input For
GM3 is sialylated by ST8SIA1 to GD3 (b-series).
ganglio_gm3 -> ganglio_gm2gd2 Provides Input For
GM3 (a-series) is elongated with GalNAc by B4GALNT1 to GM2.
ganglio_gd3 -> ganglio_gm2gd2 Provides Input For
GD3 (b-series) is likewise elongated by B4GALNT1 to GD2.
globo_gb3 -> globo_gb4 Provides Input For
Gb3 is extended by B3GALNT1 to globoside (Gb4).
Part 1: glucosylceramide synthesis (trunk)
Glucosylceramide synthase (UGCG)Reactionglucosylceramide_synthesis

Annotons

UGCG: ceramide glucosyltransferase
ugcg_activity
Participant: Family: UGCG / ceramide glucosyltransferase family
Family:
UGCG / ceramide glucosyltransferase familyPANTHER:PTHR12726
Representative Members: UGCG (human)UniProtKB:Q16739

Function

ceramide glucosyltransferase activityGO:0008120
Substrates: ceramide UDP-glucose
Products: glucosylceramide (GlcCer) UDP

Locations

Golgi membraneGO:0000139

Add glucose to ceramide (glucosylceramide).

Part 2: galactosylceramide synthesis (parallel myelin branch)
Galactosylceramide synthase (UGT8)Reactiongalactosylceramide_synthesis

Annotons

UGT8: ceramide galactosyltransferase (CGT)
ugt8_activity
Participant: Family: UGT8 / ceramide galactosyltransferase family
Family:
UGT8 / ceramide galactosyltransferase familyPANTHER:PTHR48043
Representative Members: UGT8 (human)UniProtKB:Q16880

Function

N-acylsphingosine galactosyltransferase activityGO:0003851
Substrates: ceramide UDP-galactose
Products: galactosylceramide (GalCer) UDP

Locations

endoplasmic reticulum membraneGO:0005789

Add galactose to ceramide (galactosylceramide; myelin branch).

Part 3: lactosylceramide synthesis (branch point)
Lactosylceramide synthase (B4GALT5/B4GALT6)Reactionlactosylceramide_synthesis

Annotons

B4GALT5/B4GALT6: lactosylceramide synthase
b4galt56_activity
Participant: Family: B4GALT5/6 / beta-1,4-galactosyltransferase family
Family:
B4GALT5/6 / beta-1,4-galactosyltransferase familyPANTHER:PTHR19300
Representative Members: B4GALT5 (human, major)UniProtKB:O43286 B4GALT6 (human)UniProtKB:Q9UBX8

Function

UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activityGO:0008489
Substrates: glucosylceramide (GlcCer) UDP-galactose
Products: lactosylceramide (LacCer) UDP

Locations

Golgi membraneGO:0000139

Galactosylate GlcCer to lactosylceramide (branch point).

Part 4: ganglio-series start (GM3)
GM3 synthase (ST3GAL5)Reactionganglio_gm3

Annotons

ST3GAL5: lactosylceramide alpha-2,3-sialyltransferase (GM3 synthase)
st3gal5_activity
Participant: Family: ST3GAL5 / GM3 synthase family
Family:
ST3GAL5 / GM3 synthase familyPANTHER:PTHR13713
Representative Members: ST3GAL5 (human)UniProtKB:Q9UNP4

Function

lactosylceramide alpha-2,3-sialyltransferase activityGO:0047291
Substrates: lactosylceramide (LacCer) CMP-N-acetylneuraminate
Products: GM3 (ganglioside) CMP

Locations

Golgi membraneGO:0000139

Sialylate LacCer to GM3 (ganglio-series start).

Part 5: b-series start (GD3)
GD3 synthase (ST8SIA1)Reactionganglio_gd3

Annotons

ST8SIA1: alpha-2,8-sialyltransferase (GD3 synthase)
st8sia1_activity
Participant: Family: ST8SIA1 / GD3 synthase (alpha-2,8-sialyltransferase) family
Family:
ST8SIA1 / GD3 synthase (alpha-2,8-sialyltransferase) familyPANTHER:PTHR11987
Representative Members: ST8SIA1 (human)UniProtKB:Q92185

Function

alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activityGO:0003828
Substrates: GM3 CMP-N-acetylneuraminate
Products: GD3 (b-series precursor) CMP

Locations

Golgi membraneGO:0000139

Sialylate GM3 to GD3 (b-series start).

Part 6: complex ganglioside elongation (GM2/GD2)
GM2/GD2 synthase (B4GALNT1)Reactionganglio_gm2gd2

Annotons

B4GALNT1: beta-1,4-N-acetylgalactosaminyltransferase (GM2/GD2 synthase)
b4galnt1_activity
Participant: Family: B4GALNT1 / GM2/GD2 synthase family
Family:
B4GALNT1 / GM2/GD2 synthase familyPANTHER:PTHR15046
Representative Members: B4GALNT1 (human)UniProtKB:Q00973

Function

(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activityGO:0003947
Substrates: GM3 / GD3 (and LacCer) UDP-N-acetylgalactosamine
Products: GM2 / GD2 (and GA2) UDP

Locations

Golgi membraneGO:0000139

Add GalNAc to GM3/GD3, making GM2/GD2 (complex gangliosides).

Part 7: globo-series start (Gb3)
Gb3/CD77 synthase (A4GALT)Reactionglobo_gb3

Annotons

A4GALT: lactosylceramide 4-alpha-galactosyltransferase (Gb3 synthase)
a4galt_activity
Participant: Family: A4GALT / Gb3 synthase family
Family:
A4GALT / Gb3 synthase familyPANTHER:PTHR12042
Representative Members: A4GALT (human)UniProtKB:Q9NPC4

Function

lactosylceramide 4-alpha-galactosyltransferase activityGO:0050512
Substrates: lactosylceramide (LacCer) UDP-galactose
Products: globotriaosylceramide (Gb3 / CD77) UDP

Locations

Golgi membraneGO:0000139

Alpha-galactosylate LacCer to Gb3 (globo-series start).

Part 8: globoside synthesis (Gb4)
Globoside synthase (B3GALNT1)Reactionglobo_gb4

Annotons

B3GALNT1: globoside (Gb4) synthase
b3galnt1_activity
Participant: Family: B3GALNT1 / globoside synthase (beta-1,3-GalNAc-T) family
Family:
B3GALNT1 / globoside synthase (beta-1,3-GalNAc-T) familyPANTHER:PTHR11214
Representative Members: B3GALNT1 (human)UniProtKB:O75752

Function

galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activityGO:0047273
Substrates: globotriaosylceramide (Gb3) UDP-N-acetylgalactosamine
Products: globoside (Gb4 / globotetraosylceramide) UDP

Locations

Golgi membraneGO:0000139

Add GalNAc to Gb3, making globoside (Gb4).

Part 9: (neo)lacto-series start (Lc3)
Lc3 synthase (B3GNT5)Reactionlacto_lc3

Annotons

B3GNT5: lactosylceramide beta-1,3-N-acetylglucosaminyltransferase (Lc3 synthase)
b3gnt5_activity
Participant: Family: B3GNT5 / Lc3 synthase (beta-1,3-GlcNAc-T) family
Family:
B3GNT5 / Lc3 synthase (beta-1,3-GlcNAc-T) familyPANTHER:PTHR11214
Representative Members: B3GNT5 (human)UniProtKB:Q9BYG0

Function

lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activityGO:0047256
Substrates: lactosylceramide (LacCer) UDP-N-acetylglucosamine
Products: lactotriaosylceramide (Lc3) UDP

Locations

Golgi membraneGO:0000139

Add GlcNAc to LacCer, making Lc3 ((neo)lacto-series start).