Glycosphingolipid biosynthesis (ceramide -> GlcCer/GalCer -> LacCer -> ganglio/globo/lacto series)

Glycosphingolipids are ceramide-anchored glycans that cover the outer leaflet of the plasma membrane, clustering in lipid rafts and serving as blood-group antigens, cell-adhesion and signalling receptors, and receptors hijacked by toxins and pathogens. Their synthesis is a Golgi-based branching tree built on ceramide. Two committed glycosylations start the two major limbs: glucosylceramide synthase UGCG adds glucose to ceramide (glucosylceramide, GlcCer, the trunk of the ganglio/globo/lacto glycosphingolipids), while UGT8 in the ER adds galactose to make galactosylceramide (GalCer, precursor of the myelin galactolipids and sulfatide). GlcCer is galactosylated by the beta-1,4-galactosyltransferases B4GALT5 (major) and B4GALT6 to lactosylceramide (LacCer), the central branch point. From LacCer three series diverge: the GANGLIO series begins when the sialyltransferase ST3GAL5 (GM3 synthase) adds sialic acid to make GM3, which ST8SIA1 (GD3 synthase) can further sialylate to GD3, and which B4GALNT1 (GM2/GD2 synthase) elongates with GalNAc toward the complex a-/b-series gangliosides; the GLOBO series begins when A4GALT (Gb3/CD77 synthase) adds an alpha-galactose to make globotriaosylceramide (Gb3, the Shiga-toxin receptor and Pk antigen), which B3GALNT1 (globoside synthase) extends to globoside (Gb4, the P antigen); and the (neo)LACTO series begins when B3GNT5 adds GlcNAc to make lactotriaosylceramide (Lc3), the scaffold for Lewis/blood-group glycans. Inherited defects at almost every node cause disease: UGCG is the drug target for glycosphingolipidoses, ST3GAL5 deficiency causes GM3-synthase-deficiency epileptic encephalopathy, B4GALNT1 deficiency causes hereditary spastic paraplegia (SPG26), and A4GALT/B3GALNT1 variants define the P blood-group system.

MODULE:glycosphingolipid_biosynthesisDRAFTMetabolic Pathwaymodules/glycosphingolipid_biosynthesis.yaml
glycosphingolipid biosynthetic processGO:0006688 ganglioside biosynthetic processGO:0001574
GO:0006688
glycosphingolipid biosynthetic process
UGCG/B4GALT5/6 and the series-specific glycosyltransferases build glycosphingolipids (GO:0006688).
GO:0001574
ganglioside biosynthetic process
ST3GAL5, ST8SIA1 and B4GALNT1 build the sialylated ganglio-series (GO:0001574).
file:human/UGCG/UGCG-ai-review.yaml
UGCG gene review (human)
The ceramide -> glucosylceramide step (UniProtKB:Q16739, GO:0008120) matches the completed human UGCG review.
file:human/UGT8/UGT8-ai-review.yaml
UGT8 gene review (human)
The ceramide -> galactosylceramide step (UniProtKB:Q16880, GO:0003851) matches the completed human UGT8 review.
file:human/B4GALT5/B4GALT5-ai-review.yaml
B4GALT5 gene review (human)
The GlcCer -> lactosylceramide step (UniProtKB:O43286, GO:0008489) matches the completed human B4GALT5 review.
file:human/B4GALT6/B4GALT6-ai-review.yaml
B4GALT6 gene review (human)
The GlcCer -> lactosylceramide step (UniProtKB:Q9UBX8, GO:0008489) matches the completed human B4GALT6 review.
file:human/ST3GAL5/ST3GAL5-ai-review.yaml
ST3GAL5 gene review (human)
The LacCer -> GM3 (ganglio-series start) step (UniProtKB:Q9UNP4, GO:0047291) matches the completed human ST3GAL5 review.
file:human/ST8SIA1/ST8SIA1-ai-review.yaml
ST8SIA1 gene review (human)
The GM3 -> GD3 (b-series) step (UniProtKB:Q92185, GO:0003828) matches the completed human ST8SIA1 review.
file:human/B4GALNT1/B4GALNT1-ai-review.yaml
B4GALNT1 gene review (human)
The GM3/GD3 -> GM2/GD2 step (UniProtKB:Q00973, GO:0003947) matches the completed human B4GALNT1 review.
file:human/A4GALT/A4GALT-ai-review.yaml
A4GALT gene review (human)
The LacCer -> Gb3 (globo-series start) step (UniProtKB:Q9NPC4, GO:0050512) matches the completed human A4GALT review.
file:human/B3GALNT1/B3GALNT1-ai-review.yaml
B3GALNT1 gene review (human)
The Gb3 -> globoside (Gb4) step (UniProtKB:O75752, GO:0047273) matches the completed human B3GALNT1 review.
file:human/B3GNT5/B3GNT5-ai-review.yaml
B3GNT5 gene review (human)
The LacCer -> Lc3 ((neo)lacto-series start) step (UniProtKB:Q9BYG0, GO:0047256) matches the completed human B3GNT5 review.
10Nodes
9Parts
0Variant Sets
0Variants
9Annotons
8Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:glycosphingolipid_biosynthesis deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Gene-review completeness (10/10 grounded genes reviewed)

9 complete review(s) · 0 with deep research · 0 missing review · 10 reviewed but lacking deep research

Gene Review Complete Deep research
A4GALT Q9NPC4 ✓ 14/15 ✗
B3GALNT1 O75752 ✓ ✓ ✗
B3GNT5 Q9BYG0 ✓ ✓ ✗
B4GALNT1 Q00973 ✓ ✓ ✗
B4GALT5 O43286 ✓ ✓ ✗
B4GALT6 Q9UBX8 ✓ ✓ ✗
ST3GAL5 Q9UNP4 ✓ ✓ ✗
ST8SIA1 Q92185 ✓ ✓ ✗
UGCG Q16739 ✓ ✓ ✗
UGT8 Q16880 ✓ ✓ ✗

Details

Context
Golgi membraneGO:0000139 endoplasmic reticulum membraneGO:0005789
Glycosphingolipid biosynthesisMetabolic Pathwayglycosphingolipid_biosynthesis
glycosphingolipid biosynthetic processGO:0006688 ganglioside biosynthetic processGO:0001574
Context
Golgi membraneGO:0000139 endoplasmic reticulum membraneGO:0005789

Glycosphingolipid biosynthesis (GO:0006688 + GO:0001574), grounded to ten completed human gene reviews, all Golgi-membrane glycosyltransferases except the ER galactosyltransferase UGT8. TRUNK: UGCG (Q16739 PTHR12726, GO:0008120 ceramide->GlcCer; eliglustat drug target) -> B4GALT5 (O43286, major) + B4GALT6 (Q9UBX8) share PTHR19300, GO:0008489 GlcCer->LacCer (branch point). PARALLEL: UGT8 (Q16880 PTHR48043, GO:0003851 ceramide->GalCer, ER; myelin/sulfatide branch — note GO:0008489 is the LacCer-synthase reaction, NOT UGT8's, corrected in that review). From LacCer, THREE series: GANGLIO — ST3GAL5 (Q9UNP4 PTHR13713, GO:0047291 GM3 synthase; GM3-synthase-deficiency epilepsy) -> ST8SIA1 (Q92185 PTHR11987, GO:0003828 GD3 synthase, b-series) and B4GALNT1 (Q00973 PTHR15046, GO:0003947 GM2/GD2 synthase; SPG26); GLOBO — A4GALT (Q9NPC4 PTHR12042, GO:0050512 Gb3/CD77 synthase, Shiga-toxin receptor/Pk) -> B3GALNT1 (O75752 PTHR11214, GO:0047273 globoside/Gb4 synthase, P antigen); (neo)LACTO — B3GNT5 (Q9BYG0, same PTHR11214, GO:0047256 Lc3 synthase). Recurrent curation catch: these are glycoLIPID transferases, so InterPro2GO glycoPROTEIN- biosynthesis IEAs were over-annotated/removed. Downstream sialic-acid donors come from the sialic-acid module; degradation is the (separate) lysosomal glycosphingolipid-degradation module. GO term ids/labels verified against the local go.db. Disorders: ST3GAL5 & B4GALNT1 (neuro), A4GALT/B3GALNT1 (P blood group).

Connections

The GlcCer made by UGCG is galactosylated to LacCer by B4GALT5/6.
LacCer is sialylated by ST3GAL5 to enter the ganglio-series (GM3).
lactosylceramide_synthesis -> globo_gb3 Provides Input For
LacCer is alpha-galactosylated by A4GALT to enter the globo-series (Gb3).
lactosylceramide_synthesis -> lacto_lc3 Provides Input For
LacCer is GlcNAc-extended by B3GNT5 to enter the (neo)lacto-series (Lc3).
ganglio_gm3 -> ganglio_gd3 Provides Input For
GM3 is sialylated by ST8SIA1 to GD3 (b-series).
ganglio_gm3 -> ganglio_gm2gd2 Provides Input For
GM3 (a-series) is elongated with GalNAc by B4GALNT1 to GM2.
ganglio_gd3 -> ganglio_gm2gd2 Provides Input For
GD3 (b-series) is likewise elongated by B4GALNT1 to GD2.
globo_gb3 -> globo_gb4 Provides Input For
Gb3 is extended by B3GALNT1 to globoside (Gb4).
Part 1: glucosylceramide synthesis (trunk)
Glucosylceramide synthase (UGCG)Reactionglucosylceramide_synthesis

Annotons

UGCG: ceramide glucosyltransferase
ugcg_activity
Participant: Family: UGCG / ceramide glucosyltransferase family
Family:
UGCG / ceramide glucosyltransferase familyPANTHER:PTHR12726
Representative Members: UGCG (human)UniProtKB:Q16739

Function

ceramide glucosyltransferase activityGO:0008120
Substrates: ceramide UDP-glucose
Products: glucosylceramide (GlcCer) UDP

Locations

Golgi membraneGO:0000139

Add glucose to ceramide (glucosylceramide).

Part 2: galactosylceramide synthesis (parallel myelin branch)
Galactosylceramide synthase (UGT8)Reactiongalactosylceramide_synthesis

Annotons

UGT8: ceramide galactosyltransferase (CGT)
ugt8_activity
Participant: Family: UGT8 / ceramide galactosyltransferase family
Family:
UGT8 / ceramide galactosyltransferase familyPANTHER:PTHR48043
Representative Members: UGT8 (human)UniProtKB:Q16880

Function

N-acylsphingosine galactosyltransferase activityGO:0003851
Substrates: ceramide UDP-galactose
Products: galactosylceramide (GalCer) UDP

Locations

endoplasmic reticulum membraneGO:0005789

Add galactose to ceramide (galactosylceramide; myelin branch).

Part 3: lactosylceramide synthesis (branch point)
Lactosylceramide synthase (B4GALT5/B4GALT6)Reactionlactosylceramide_synthesis

Annotons

B4GALT5/B4GALT6: lactosylceramide synthase
b4galt56_activity
Participant: Family: B4GALT5/6 / beta-1,4-galactosyltransferase family
Family:
B4GALT5/6 / beta-1,4-galactosyltransferase familyPANTHER:PTHR19300
Representative Members: B4GALT5 (human, major)UniProtKB:O43286 B4GALT6 (human)UniProtKB:Q9UBX8

Function

UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activityGO:0008489
Substrates: glucosylceramide (GlcCer) UDP-galactose
Products: lactosylceramide (LacCer) UDP

Locations

Golgi membraneGO:0000139

Galactosylate GlcCer to lactosylceramide (branch point).

Part 4: ganglio-series start (GM3)
GM3 synthase (ST3GAL5)Reactionganglio_gm3

Annotons

ST3GAL5: lactosylceramide alpha-2,3-sialyltransferase (GM3 synthase)
st3gal5_activity
Participant: Family: ST3GAL5 / GM3 synthase family
Family:
ST3GAL5 / GM3 synthase familyPANTHER:PTHR13713
Representative Members: ST3GAL5 (human)UniProtKB:Q9UNP4

Function

lactosylceramide alpha-2,3-sialyltransferase activityGO:0047291
Substrates: lactosylceramide (LacCer) CMP-N-acetylneuraminate
Products: GM3 (ganglioside) CMP

Locations

Golgi membraneGO:0000139

Sialylate LacCer to GM3 (ganglio-series start).

Part 5: b-series start (GD3)
GD3 synthase (ST8SIA1)Reactionganglio_gd3

Annotons

ST8SIA1: alpha-2,8-sialyltransferase (GD3 synthase)
st8sia1_activity
Participant: Family: ST8SIA1 / GD3 synthase (alpha-2,8-sialyltransferase) family
Family:
ST8SIA1 / GD3 synthase (alpha-2,8-sialyltransferase) familyPANTHER:PTHR11987
Representative Members: ST8SIA1 (human)UniProtKB:Q92185

Function

alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activityGO:0003828
Substrates: GM3 CMP-N-acetylneuraminate
Products: GD3 (b-series precursor) CMP

Locations

Golgi membraneGO:0000139

Sialylate GM3 to GD3 (b-series start).

Part 6: complex ganglioside elongation (GM2/GD2)
GM2/GD2 synthase (B4GALNT1)Reactionganglio_gm2gd2

Annotons

B4GALNT1: beta-1,4-N-acetylgalactosaminyltransferase (GM2/GD2 synthase)
b4galnt1_activity
Participant: Family: B4GALNT1 / GM2/GD2 synthase family
Family:
B4GALNT1 / GM2/GD2 synthase familyPANTHER:PTHR15046
Representative Members: B4GALNT1 (human)UniProtKB:Q00973

Function

(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activityGO:0003947
Substrates: GM3 / GD3 (and LacCer) UDP-N-acetylgalactosamine
Products: GM2 / GD2 (and GA2) UDP

Locations

Golgi membraneGO:0000139

Add GalNAc to GM3/GD3, making GM2/GD2 (complex gangliosides).

Part 7: globo-series start (Gb3)
Gb3/CD77 synthase (A4GALT)Reactionglobo_gb3

Annotons

A4GALT: lactosylceramide 4-alpha-galactosyltransferase (Gb3 synthase)
a4galt_activity
Participant: Family: A4GALT / Gb3 synthase family
Family:
A4GALT / Gb3 synthase familyPANTHER:PTHR12042
Representative Members: A4GALT (human)UniProtKB:Q9NPC4

Function

lactosylceramide 4-alpha-galactosyltransferase activityGO:0050512
Substrates: lactosylceramide (LacCer) UDP-galactose
Products: globotriaosylceramide (Gb3 / CD77) UDP

Locations

Golgi membraneGO:0000139

Alpha-galactosylate LacCer to Gb3 (globo-series start).

Part 8: globoside synthesis (Gb4)
Globoside synthase (B3GALNT1)Reactionglobo_gb4

Annotons

B3GALNT1: globoside (Gb4) synthase
b3galnt1_activity
Participant: Family: B3GALNT1 / globoside synthase (beta-1,3-GalNAc-T) family
Family:
B3GALNT1 / globoside synthase (beta-1,3-GalNAc-T) familyPANTHER:PTHR11214
Representative Members: B3GALNT1 (human)UniProtKB:O75752

Function

galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activityGO:0047273
Substrates: globotriaosylceramide (Gb3) UDP-N-acetylgalactosamine
Products: globoside (Gb4 / globotetraosylceramide) UDP

Locations

Golgi membraneGO:0000139

Add GalNAc to Gb3, making globoside (Gb4).

Part 9: (neo)lacto-series start (Lc3)
Lc3 synthase (B3GNT5)Reactionlacto_lc3

Annotons

B3GNT5: lactosylceramide beta-1,3-N-acetylglucosaminyltransferase (Lc3 synthase)
b3gnt5_activity
Participant: Family: B3GNT5 / Lc3 synthase (beta-1,3-GlcNAc-T) family
Family:
B3GNT5 / Lc3 synthase (beta-1,3-GlcNAc-T) familyPANTHER:PTHR11214
Representative Members: B3GNT5 (human)UniProtKB:Q9BYG0

Function

lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activityGO:0047256
Substrates: lactosylceramide (LacCer) UDP-N-acetylglucosamine
Products: lactotriaosylceramide (Lc3) UDP

Locations

Golgi membraneGO:0000139

Add GlcNAc to LacCer, making Lc3 ((neo)lacto-series start).